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Otomys cheesmani previously was included in O.typus but shown to be a distinct spe-cies based on morphological and molecular grounds. Monotypic. Distribution. Restricted to two known lo-calities in NW Ethiopia, S ofLake Tana. Descriptive notes. Head-body 165-210 mm, tail 77-106 mm, ear 22-24 mm, hindfoot 28-31 mm. No specific data are available for body weight. Cheesman's Vlei Rat has shaggy dark pelage and is larger than all other species of Otomys, except the Angolan Vlei Rat (O. anchietae). Fur of Cheesman's Vlei Rat is bright brown, with reddish shade above and pale yellowish gray below. Ears are blackish, and inner surfaces are covered with short rufous hairs. Forefeet and hindfeet are dark gray above. Tail is relatively short (49-3% of head-body length), blackish above and pale yellowish below but notappearing distinctly bicolored. Lower incisors with two deep grooves. M, has four laminae, and M" has eight or nine laminae. in Muridae
Otomys cheesmani previously was included in O.typus but shown to be a distinct spe-cies based on morphological and molecular grounds. Monotypic. Distribution. Restricted to two known lo-calities in NW Ethiopia, S ofLake Tana. Descriptive notes. Head-body 165-210 mm, tail 77-106 mm, ear 22-24 mm, hindfoot 28-31 mm. No specific data are available for body weight. Cheesman's Vlei Rat has shaggy dark pelage and is larger than all other species of Otomys, except the Angolan Vlei Rat (O. anchietae). Fur of Cheesman's Vlei Rat is bright brown, with reddish shade above and pale yellowish gray below. Ears are blackish, and inner surfaces are covered with short rufous hairs. Forefeet and hindfeet are dark gray above. Tail is relatively short (49-3% of head-body length), blackish above and pale yellowish below but notappearing distinctly bicolored. Lower incisors with two deep grooves. M, has four laminae, and M" has eight or nine laminae.
CG molecular dynamics simulations. Supporting data for "Improving Martini 3 for Disordered and Multidomain Proteins".
<pre>Coarse-grained molecular dynamics simulations with Martini 3 with varying rescaling of protein-water interactions. Supporting data for "Improving Martini 3 for Disordered and Multidomain Proteins".</pre>
Data sets for "Superionic water with stiffness between molecular ice and liquid"
<p>This is the source data shown in Figs. 1, 3A, and Figs. S2, S3, S4, S5, S6, S7, and S12 for the article "Superionic water with stiffness between molecular ice and liquid" by Kimura and Murakami.</p>
Data sets for "Superionic water with stiffness between molecular ice and liquid"
<p>This is the source data shown in Figs. 1, 3A, and Figs. S2, S3, S4, S5, S6, S7, and S12 for the article "Superionic water with stiffness between molecular ice and liquid" by Kimura and Murakami.</p>
Figure 14. A, B, E, F in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 14. A, B, E, F, Eratigena inermis; C, D, G, H, Eratigena vomeroi; I, Tegenaria montiszasensis sp. nov.; J, Tegenaria annulata; K, L, Tegenaria schoenhoferi sp. nov.; M-P, Tegenaria annae sp. nov.; Q-T, Tegenaria ariadnae. Left male palp in ventral (A, C, K, M, Q) and retrolateral views (B, D, L, N, R); epigyne in ventral view (O, S), vulva in dorsal (E, G, I, J, P, T) and lateral views (F, H). Abbreviations: E, embolus; C, conductor; CD, copulatory duct; DA, dorsal appendages on CD; FD, fertilization duct; MA, median apophysis; RC, receptaculum; RTA d, dorsal branch of retrolateral tibial apophysis; RTA l, lateral branch of retrolateral tibial apophysis; TR, transversal ridge.
Figure 12. A, B in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 12. A, B, Eratigena herculea; C, D, H, N, O, Eratigena arganoi; E, K, Eratigena sicana; F, G, L, M, Eratigena hispanica; I, J, P, Q, Eratigena sardoa; R–T, Eratigena picta. Female epigyne in ventral (A, C, F, I) and vulva in dorsal view (B, D, E, G, J); male left palp in ventral (L, N, P, R) and retrolateral views (M, O, Q, S); frontal face of male E. arganoi (H); habitus of female E. sicana (K); habitus of two males of E. picta (T). Scale bars = 0.5 mm.
› Figure 22. A, B, Tegenaria capolongoi; C-K, Tegenaria parmenidis; L-S, Tegenaria circeoensis sp. nov. Left male palp in ventral (E, N), retrolateral (F, O), and dorsal views (G, P); epigyne in ventral (A, C, Q, S) and vulva in dorsal view (B, D, R); intraspecific epigynal morphological variation (S); face of male in frontal view (J); spinnerets in ventral view (K); habitus (H) of male in dorsal and sternum in ventral view (I); carapace and abdomen of male in dorsal view (L, M). Scale bars = 0.5 mm (except 1 mm for H). in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
› Figure 22. A, B, Tegenaria capolongoi; C-K, Tegenaria parmenidis; L-S, Tegenaria circeoensis sp. nov. Left male palp in ventral (E, N), retrolateral (F, O), and dorsal views (G, P); epigyne in ventral (A, C, Q, S) and vulva in dorsal view (B, D, R); intraspecific epigynal morphological variation (S); face of male in frontal view (J); spinnerets in ventral view (K); habitus (H) of male in dorsal and sternum in ventral view (I); carapace and abdomen of male in dorsal view (L, M). Scale bars = 0.5 mm (except 1 mm for H).
Figure 17. A, B in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 17. A, B, Tegenaria domestica; C, F, G, M, N, Tegenaria racovitzai; D, E, Q, R, Tegenaria hauseri; H-J, Tegenaria bozhkovi; K, L, O, P, Tegenaria campestris; S, T, Tegenaria pieperi; U, Tegenaria schmalfussi; V, Tegenaria faniapollinis; W, Tegenaria percuriosa (holotype of Tegenaria bithyniae); X-Z, Tegenaria croatica sp. nov. Left male palp in ventral (M, O, Q) and retrolateral views (N, P, R); epigyne in ventral (D, F, H, K, S, U–W, Y) and posterioventral views (T), vulva in dorsal (E, G, I, L, U, Z) and lateral views (J); face of female Teg. domestica (A) and Teg. racovitzai (C); cheliceral margins of female Teg. domestica in posterioventral view (B); habitus, dorsal view (X). Scale bars = 0.5 mm (no scale for Teg. faniapollinis, V, and Teg. schmalfussi, U).
Figure 13. A, B, I, J in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 13. A, B, I, J, Eratigena balearica; C, D, K, L, R, Eratigena inermis; E, F, M–Q, Eratigena vomeroi; G, H, Eratigena picta. Male left palp in ventral (A, C, E) and retrolateral views (B, D, F); epigyne in ventral (G, I, K, M) and vulva in dorsal view (H, J, L, N); carapace (O) and abdomen (Q) in dorsal view, sternum in ventral view (P, R). Scale bars = 0.5 mm.
Figure 20. A–I in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 20. A–I, Tegenaria silvestris, variation in males and females (F–I); J-M, Tegenaria parvula; N, S-V, Tegenaria henroti; O-R, Tegenaria eleonorae; W-Z, Tegenaria pindosiensis sp. nov. Left male palp in ventral (A, F, J, O, S) and retrolateral views (B, G, K, P, T); epigyne in ventral (C, H, L, Q, U, W) and vulva in dorsal (D, I, M, R, V, X) and lateral views (E); female habitus (N) and abdomen in dorsal view (Z); sternum in ventral view (Y). Scale bars = 0.5 mm (except 1 mm for N).
Figure 18. A–C in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 18. A–C, Tegenaria domestica; D-F, Tegenaria carensis; G, H, Tegenaria argaeica (female paratype); I-M, Tegenaria circeoensis sp. nov.; N-Q, Tegenaria parmenidis; R, S, Tegenaria sbordonii. Left male palp in ventral (A, D, I, N, R), retrolateral (E, J, O, S), and dorsal views (K); epigyne in ventral (B, G, L, P) and vulva in dorsal view (C, F, H, M, Q).
Figure 15. A, B in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 15. A, B, Tegenaria achaea; C-F, Tegenaria argaeica; G-J, Tegenaria armigera; K, L, O-Q, Tegenaria dalmatica; M, N, Tegenaria hasperi; R-U, Tegenaria annulata; and V, X, Tegenaria schoenhoferi sp. nov. Left male palp in lateral (C, H, L, U, W), and ventral views (D, G, K, T, V); epigyne in ventral (A, E, I, M, O, R) and vulva in dorsal view (B, F, J, N, P, S); comparison of vulva of small and large 'forms' of Teg. armigera (J); Prosoma in frontal view (Q), abdomen in dorsal view (X). Scale bars = 0.5 mm (epigyne and vulva of Teg. argaeica, E–F without scale; photos from syntype taken with digital camera through the oculars).
Figure 5 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 5. Combined mtDNA data (cytochrome c oxidase subunit 1, nicotinamide adenine dinucleotide dehydrogenase subunit 1) Bayesian tree. Posterior probabilities of clades are expressed in percentages and given above branches. Clade support (> 50) from the resampling method (jack-knife, 1000 replications) based on parsimony analysis with implied weighting (K = 10) is given below the branches. Abbreviations: AT, Austria; BG, Bulgaria; CH, Switzerland; DE, Germany; FR, France; GR, Greece; IT, Italy; PT, Portugal; US, United States.
Figure 4 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 4. Combined DNA data (cytochrome c oxidase subunit 1, nicotinamide adenine dinucleotide dehydrogenase subunit 1, and 28S) Bayesian tree. Posterior probabilities of clades are expressed in percentages and given above branches. Clade support (> 50) from the resampling method (jack-knife, 1000 replications) based on parsimony analysis with implied weighting (K = 10) is given below the branches. Abbreviations: AT, Austria; BE, Belgium; BG, Bulgaria; CH, Switzerland; DE, Germany; ES, Spain; FR, France; GR, Greece; IT, Italy; PT, Portugal; SE, Sweden; US, United States. ·
Figure 2 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 2. Microscope and scanning electron microscopy pictures of character details. Plumose hairs (A) and claws (B) on tarsus I of Tegenaria dalmatica; C, embolus tip of Tegenaria ferruginea; D, male palp of Tegenaria dalmatica in ventroretrolateral view; E, retrolateral tibial apophysis in retrolateral view of Tegenaria ferruginea; F, epigyne in ventral view of Tegenaria domestica; G, long and dark spikes on the anal tubercle of Agelena labyrinthica; H, face and chelicerae, frontal view; I, cheliceral margins with teeth, ventral view; and J, sternum, ventral view, of female Eratigena atrica. Abbreviations: BT, basal portion of tegulum; C, conductor; CO, copulatory opening; CON, connection of tegulum and conductor; DB, dorsal branch; DC, distal portion of conductor; DP, dorsal part of terminal end of conductor; E, embolus; EP, epigynal plate; LB, lateral branch; LM, lateral margin of median region; MA, median apophysis; MC, lateral margin of conductor (here entirely folded); MP, median plate; MR, median region; PS, posterior sclerite (here bar- or band like); PT, 'pseudo teeth'; TEC, terminal end of conductor (here bifid); VB, ventral branch; VP, ventral part of terminal end of conductor. Scale bars for F–J = 0.5 mm.
Figure 3 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 3. Most parsimonious strict consensus tree based on morphological data with equal character weights. Branch support is indicated by jack-knife values (1000 pseudoreplicates)/Bremer support at the nodes. Analysis with implied weighting (K = 10) resulted in additional supported clades (jack-knife support): Tegenaria mercanturensis + Tegenaria mirifica (69), Tegenaria montana + Tegenaria rilaensis (52), Tegenaria parvula + Tegenaria silvestris (55). Black dots indicate apomorpies, white dots indicate homoplasies. Numbers above the dots correspond to the character number, numbers below the dots to the character state.
Figure 1 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 1. Scanning electron microscopy pictures of spinnerets of female and other structures. A–D, Tegenaria domestica; E, F, Tegenaria parietina; G, H, Tegenaria dalmatica; I, Eratigena agrestis; J, Eratigena atrica; K, Aterigena ligurica; L-N, Malthonica lusithanica; O, Allagelena gracilens. A, L, overview; B, D, F, I, K, N, PMS; E, H, J, ALS; M, distal segment of PLS; C, G, colulus; O, tarsal trichobothrium. Abbreviations: ALS, anterior lateral spinnerets; CGS, cylindrical gland spigot; COL, colulus; mAS, minor ampullate gland spigot; MAS, major ampullate gland spigot; N, nubbin; PGS, piriform gland spigots; PLS, posterior lateral spinnerets; PMS, posterior median spinnerets; T, tartipore; TS, tracheal stigma.
Data for: Molecular and clinicopathological differences between depressed and protruded T2 colorectal cancer
<p><strong><span>Background</span></strong></p> <p><span>Colorectal cancer (CRC) can be classified into four consensus molecular subtypes (CMS) according to genomic aberrations and gene expression profiles. CMS is expected to be useful in predicting prognosis and selecting chemotherapy regimens. However, there are still no reports on the relationship between the morphology and CMS. </span></p> <p><strong><span>Methods</span></strong></p> <p><span>This retrospective study included 55 subjects with T2 CRC undergoing surgical resection, of whom 30 had the depressed type and 25 the protruded type. In the classification of the CMS, we first defined cases with deficient mismatch repair as CMS1. And then, CMS2/3 and CMS4 were classified using an online classifier developed by Trinh et al. The staining intensity of CDX2, HTR2B, FRMD6, ZEB1, and KER and the percentage contents of CDX2, FRMD6, and KER are input into the classifier to obtain automatic output classifying the specimen as CMS2/3 or CMS4.</span></p> <p><strong><span>Results</span></strong></p> <p><span>According to the results yielded by the online classifier, of the 30 depressed-type cases, 15 (50%) were classified as CMS2/3 and 15 (50%) as CMS4. Of the 25 protruded-type cases, 3 (12%) were classified as CMS1 and 22 (88%) as CMS2/3. All of the T2 CRCs classified as CMS4 were depressed CRCs. More malignant pathological findings such as lymphatic invasion were associated with the depressed rather than protruded T2 CRC cases.</span></p>
FIGURE 8. Allmania multiflora a in First molecular and morphometric data for the genus Allmania (Amaranthaceae), with the description of a new species from India
FIGURE 8. Allmania multiflora a. habit; b. flower; c., d.,e. bracteoles; f. bract; g. tepal; h. androecial cup; i. gynoecium; j. seed (drawing by V. S. A. Kumar).
FIGURE 6 in First molecular and morphometric data for the genus Allmania (Amaranthaceae), with the description of a new species from India
FIGURE 6. Neighbor-joining tree showing the relationship of Allmania multiflora with related species using concatenated rbcL, matK data. Numbers on the nodes indicate bootstrap percentage (BP).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.