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Consistent variations in personality traits and their potential for genetic improvement in the biocontrol agent Trichogramma evanescens - Data table and code for data analysis
<p>We provide data and code needed to re-do the analyses and figures presented in our preprint <em>Consistent variations in personality traits and their potential for genetic improvement in the biocontrol agent </em>Trichogramma evanescens (DOI : 10.1101/2020.08.21.257881 ):</p> <p>- data table : <em>data_repetition01.xls</em>, with informations about each column in the file <em>data_repetition_info.pdf</em></p> <p>- data table : <em>data_individual01.xls</em>, with informations about each column in the file <em>data_indivdual_info.pdf</em></p> <p><em>- </em>The R code used to do the analyses : <em>Rscript-Consistent variations in personality traits and their potential for genetic improvement in the biocontrol agent Trichogramma evanescens.R</em></p> <p><br> </p> <p> </p> <p> </p> <p> </p>
SUPPLEMENTARY TABLE 1 in The bees of Michigan (Hymenoptera: Apoidea: Anthophila), with notes on distribution, taxonomy, pollination, and natural history
SUPPLEMENTARY TABLE 1. Michigan name-bearing type specimens including holotypes (HT), lectotypes (LT) and syntypes (ST).
Filtered SNP tables - Rangewide, Hamilton, Tejon, and Madera transects
<p>Understanding how the environment shapes genetic variation provides critical insight about the evolution of local adaptation in natural populations. At multiple spatial scales and multiple geographic contexts within a single species, such information could address a number of fundamental questions about the scale of local adaptation and whether or not the same loci are involved at different spatial scales or geographic contexts. We used landscape genomic approaches from three local elevational transects and range-wide sampling to 1) identify genetic variation underlying local adaptation to environmental gradients in the California endemic oak, Quercus lobata, 2) examine whether putatively adaptive SNPs show signatures of selection at multiple spatial scales, and 3) map putatively adaptive variation to assess the scale and pattern of local adaptation. Of over 10k single-nucleotide polymorphisms (SNPs) generated with genotyping-by-sequencing, we found signatures of natural selection by climate or local environment at over 600 SNPs (536 loci), some at multiple spatial scales across multiple analyses. Candidate SNPs identified with gene–environment tests (LFMM) at the range-wide scale also showed elevated associations with climate variables compared to the background at both range-wide and elevational transect scales with gradient forest analysis. Some loci overlap with those detected in other oak species, raising the question of whether the same loci might be involved in local climate adaptation in different congeneric species that inhabit different geographic contexts. Mapping landscape patterns of adaptive versus background genetic variation identified regions of marked local adaptation and suggests nonlinear association of candidate SNPs and environmental variables. Taken together, our results offer robust evidence for novel candidate genes for local climate adaptation at multiple spatial scales.</p>
Supplementary Table
<p>List of genes for which expression values were obtained through RNA-seq for NEM316 at exponential growth phase. </p>
Data supporting tables and figures in t ms Tidal influence on seismic activity during the 2011-2013 El Hierro volcanic unrest
<p>Introduction</p> <p>This set of files contains data supporting the tables and figures featured in the journal article.<br> <br> File Ts01.xlsx shows data from the earthquake cluster C1 defined in the manuscript, as well as tidal stress phases and amplitudes obtained for each event using the methodology explained in the text. <br> Files Ts02.xlsx, Ts03.xlsx and Ts04.xlsx are datasets analog to File Ts01.xlsx, but using data from clusters C2, C3 and C4 respectively. <br> Data of Files Ts01.xlsx, Ts02.xlsx, Ts03.xlsx and Ts04.xlsx have been used to compose Tables 1, 2, 3, 4, 5, 6 in the manuscript, Figures 3, 5, 8, 9 in the manuscript, <br> plus Figures S9, S10, S11, S12, S13, S14, S15, S16 in the Supporting Information.</p> <p>File Ts05.xlsx features tidal strain calculated for the setting of the shallow magma reservior in Phase 1 of the volcanic crisis, at two-hour intervals, between 2011-07-01 and 2011-10-31. <br> Data from File Ts05.xlsx has been used for composition of Figures 6 and 7 in the manuscript.<br> Files Ts06.xlsx, Ts07.xlsx and Ts08.xlsx are datasets analog to File Ts05.xlsx, but calculating tidal strain for the locations of events belonging to clusters C2, C3 and C4 respectively.<br> Data of Files Ts06.xlsx, Ts07.xlsx and Ts08.xlsx have been used to compose Figures S1, S2, S3, S4, S5, S6 in the Supporting Information. </p> <p>File Ts09.xlsx shows tidal confining stress values corresponding to the events in cluster C1. <br> File Ts10.xlsx features values of tidal stress taken hourly for the location corresponding to an event belonging to subcluster C1A. <br> File Ts11.xlsx features values of tidal stress taken hourly for the location corresponding to an event belonging to subcluster C1B. <br> Figure S7 in the Supporting Information has been produced using data from Files Ts09.xlsx, Ts10.xlsx and Ts11.xlsx. </p> <p>File Ts12.xlsx collects all events in four clusters C1-C4, and shows the amplitudes of the tidal confining stress half cycles in which the events occur, considering only ocean tides or only body tides. <br> These data were used for stating the predominance of ocean tidal loading against body tides in Chapter 5 - Discussion.</p> <p>File Ts13.xlsx shows data from the earthquake cluster C1 defined in the manuscript, as well as tidal stress phases and amplitudes, but considering only those events with M >= 2.<br> Files Ts14.xlsx, Ts15.xlsx and Ts16.xlsx are datasets analog to File Ts13.xlsx, but using data from clusters C2, C3 and C4 (events with M >= 2 only) respectively.<br> Data of Files Ts13.xlsx, Ts14.xlsx, Ts15.xlsx and Ts16.xlsx have been used to compose Table S3 in the Supporting Information.</p> <p>File Ts17.xlsx features the 4 declustered catalogs D1, D2, D3 and D4 which are described in Tables S4 and S5 in the Supporting Information.</p> <p>File Ts18.xlsx collects all events in four clusters C1-C4, and shows the results of tidal tilt (North-South and East-West components). <br> These data were used to compose Figures S27 and S28 in the Supporting Information. </p> <p>File Ts19.xlsx features tidal stress calculated for the setting of the shallow magma reservior in Phase 1 of the volcanic crisis, at two-hour intervals, between 2011-07-01 and 2011-10-31. <br> Data from File Ts19.xlsx has been used for composition of Figure S17 in the manuscript.<br> Files Ts20.xlsx, Ts21.xlsx and Ts22.xlsx are datasets analog to File Ts19.xlsx, but calculating tidal stress for the locations of events belonging to clusters C2, C3 and C4 respectively.<br> Data of Files Ts20.xlsx, Ts21.xlsx and Ts22.xlsx have been used to compose Figures S18, S19 and S20 in the Supporting Information.</p> <p>File Ts23.xlsx shows data from the earthquake cluster C1 defined in the manuscript, as well as tidal stress phases and amplitudes obtained for each event using the methodology explained in the text,<br> but considering only ocean tides in the calculations. <br> Files Ts24.xlsx, Ts25.xlsx and Ts26.xlsx are datasets analog to File Ts23.xlsx, but using data from clusters C2, C3 and C4 respectively. <br> Data of Files Ts01.xlsx, Ts02.xlsx, Ts03.xlsx and Ts04.xlsx have been used to compose Figures S21 and S22 in Supporting Information.</p> <p>File Ts27.xlsx features horizontal tidal stress (Earth tides only) calculated for the setting of the shallow magma reservior in Phase 1 of the volcanic crisis, at two-hour intervals, <br> between 2011-07-01 and 2011-10-31. Data from File Ts27.xlsx has been used for composition of Figure S23 in the manuscript.<br> Files Ts28.xlsx, Ts29.xlsx and Ts30.xlsx are datasets analog to File Ts27.xlsx, but calculating horizontal tidal stress for the locations of events belonging to clusters C2, C3 and C4 respectively.<br> Data of Files Ts28.xlsx, Ts29.xlsx and Ts30.xlsx have been used to compose Figures S24, S25 and S26 in the Supporting Information.</p> <p>1. Ts01.xlsx Data used to detect tidal stress correlations in Phase 1 of the volcanic crisis.</p> <p>1.1 Column "Year", y.<br> 1.2 Column "Month", m.<br> 1.3 Column "Day", d.<br> 1.4 Column "Hour", h.<br> 1.5 Column "Minute", min.<br> 1.6 Column "Second", s.<br> 1.7 Column "Latitude", deg, latitude north of equator.<br> 1.8 Column "Longitude", deg, longitude east of Greenwich.<br> 1.9 Column "Depth", km.<br> 1.10 Column "Phase_east-west_stress", deg, tidal phase angle assigned to the event, calculated for tidal east-west stress.<br> 1.11 Column "Amplitude_east-west_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal east-west stress.<br> 1.12 Column "Phase_north-south_stress", deg, tidal phase angle assigned to the event, calculated for tidal north-south stress.<br> 1.13 Column "Amplitude_north-south_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal north-south stress.<br> 1.14 Column "Phase_vertical_stress", deg, tidal phase angle assigned to the event, calculated for tidal vertical stress.<br> 1.15 Column "Amplitude_vertical_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal vertical stress.<br> 1.16 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 1.17 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 1.18 Column "Phase_confining_stress_rate", deg, tidal phase angle assigned to the event, calculated for tidal confining stress rate.<br> 1.19 Column "Amplitude_confining_stress_rate", Pa/h, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress rate.<br> 1.20 Column "Magnitude", earthquake magnitude.<br> 1.21 Column "Autonum", autonumeric code.</p> <p>2. Ts02.xlsx Data used to detect tidal stress correlations in Phase 2 of the volcanic crisis.</p> <p>2.1 Column "Year", y.<br> 2.2 Column "Month", m.<br> 2.3 Column "Day", d.<br> 2.4 Column "Hour", h.<br> 2.5 Column "Minute", min.<br> 2.6 Column "Second", s.<br> 2.7 Column "Latitude", deg, latitude north of equator.<br> 2.8 Column "Longitude", deg, longitude east of Greenwich.<br> 2.9 Column "Depth", km.<br> 2.10 Column "Phase_east-west_stress", deg, tidal phase angle assigned to the event, calculated for tidal east-west stress.<br> 2.11 Column "Amplitude_east-west_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal east-west stress.<br> 2.12 Column "Phase_north-south_stress", deg, tidal phase angle assigned to the event, calculated for tidal north-south stress.<br> 2.13 Column "Amplitude_north-south_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal north-south stress.<br> 2.14 Column "Phase_vertical_stress", deg, tidal phase angle assigned to the event, calculated for tidal vertical stress.<br> 2.15 Column "Amplitude_vertical_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal vertical stress.<br> 2.16 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 2.17 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 2.18 Column "Phase_confining_stress_rate", deg, tidal phase angle assigned to the event, calculated for tidal confining stress rate.<br> 2.19 Column "Amplitude_confining_stress_rate", Pa/h, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress rate.<br> 2.20 Column "Magnitude", earthquake magnitude.<br> 2.21 Column "Autonum", autonumeric code.</p> <p>3. Ts03.xlsx Data used to detect tidal stress correlations in Phase 3 of the volcanic crisis.</p> <p>3.1 Column "Year", y.<br> 3.2 Column "Month", m.<br> 3.3 Column "Day", d.<br> 3.4 Column "Hour", h.<br> 3.5 Column "Minute", min.<br> 3.6 Column "Second", s.<br> 3.7 Column "Latitude", deg, latitude north of equator.<br> 3.8 Column "Longitude", deg, longitude east of Greenwich.<br> 3.9 Column "Depth", km.<br> 3.10 Column "Phase_east-west_stress", deg, tidal phase angle assigned to the event, calculated for tidal east-west stress.<br> 3.11 Column "Amplitude_east-west_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal east-west stress.<br> 3.12 Column "Phase_north-south_stress", deg, tidal phase angle assigned to the event, calculated for tidal north-south stress.<br> 3.13 Column "Amplitude_north-south_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal north-south stress.<br> 3.14 Column "Phase_vertical_stress", deg, tidal phase angle assigned to the event, calculated for tidal vertical stress.<br> 3.15 Column "Amplitude_vertical_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal vertical stress.<br> 3.16 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 3.17 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 3.18 Column "Phase_confining_stress_rate", deg, tidal phase angle assigned to the event, calculated for tidal confining stress rate.<br> 3.19 Column "Amplitude_confining_stress_rate", Pa/h, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress rate.<br> 3.20 Column "Magnitude", earthquake magnitude.<br> 3.21 Column "Autonum", autonumeric code.</p> <p>4. Ts04.xlsx Data used to detect tidal stress correlations in Phase 4 of the volcanic crisis.</p> <p>4.1 Column "Year", y.<br> 4.2 Column "Month", m.<br> 4.3 Column "Day", d.<br> 4.4 Column "Hour", h.<br> 4.5 Column "Minute", min.<br> 4.6 Column "Second", s.<br> 4.7 Column "Latitude", deg, latitude north of equator.<br> 4.8 Column "Longitude", deg, longitude east of Greenwich.<br> 4.9 Column "Depth", km.<br> 4.10 Column "Phase_east-west_stress", deg, tidal phase angle assigned to the event, calculated for tidal east-west stress.<br> 4.11 Column "Amplitude_east-west_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal east-west stress.<br> 4.12 Column "Phase_north-south_stress", deg, tidal phase angle assigned to the event, calculated for tidal north-south stress.<br> 4.13 Column "Amplitude_north-south_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal north-south stress.<br> 4.14 Column "Phase_vertical_stress", deg, tidal phase angle assigned to the event, calculated for tidal vertical stress.<br> 4.15 Column "Amplitude_vertical_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal vertical stress.<br> 4.16 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 4.17 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 4.18 Column "Phase_confining_stress_rate", deg, tidal phase angle assigned to the event, calculated for tidal confining stress rate.<br> 4.19 Column "Amplitude_confining_stress_rate", Pa/h, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress rate.<br> 4.20 Column "Magnitude", earthquake magnitude.<br> 4.21 Column "Autonum", autonumeric code.</p> <p>5. Ts05.xlsx Tidal strain calculated for the shallow magma reservior between 2011-07-01 and 2011-10-31.</p> <p>5.1 Column "Latitude", deg, latitude north of equator.<br> 5.2 Column "Longitude", deg, longitude east of Greenwich.<br> 5.3 Column "Depth", km.<br> 5.4 Column "Date", date in format yyyymmdd.<br> 5.5 Column "Time", time in format hour : minute : second.<br> 5.6 Column "Volume strain", nanostrain, tidal volume strain.<br> 5.7 Column "East-West strain", nanostrain, tidal East-West strain.<br> 5.8 Column "North-South strain", nanostrain, tidal North-South strain.<br> 5.9 Column "Vertical strain", nanostrain, tidal Vertical strain.</p> <p>6. Ts06. Tidal strain calculated for the location of an event belonging to cluster C2.</p> <p>6.1 Column "Latitude", deg, latitude north of equator.<br> 6.2 Column "Longitude", deg, longitude east of Greenwich.<br> 6.3 Column "Depth", km.<br> 6.4 Column "Date", date in format yyyymmdd.<br> 6.5 Column "Time", time in format hour : minute : second.<br> 6.6 Column "Volume strain", nanostrain, tidal volume strain.<br> 6.7 Column "East-West strain", nanostrain, tidal East-West strain.<br> 6.8 Column "North-South strain", nanostrain, tidal North-South strain.<br> 6.9 Column "Vertical strain", nanostrain, tidal Vertical strain.</p> <p>7. Ts07. Tidal strain calculated for the location of an event belonging to cluster C3.</p> <p>7.1 Column "Latitude", deg, latitude north of equator.<br> 7.2 Column "Longitude", deg, longitude east of Greenwich.<br> 7.3 Column "Depth", km.<br> 7.4 Column "Date", date in format yyyymmdd.<br> 7.5 Column "Time", time in format hour : minute : second.<br> 7.6 Column "Volume strain", nanostrain, tidal volume strain.<br> 7.7 Column "East-West strain", nanostrain, tidal East-West strain.<br> 7.8 Column "North-South strain", nanostrain, tidal North-South strain.<br> 7.9 Column "Vertical strain", nanostrain, tidal Vertical strain.</p> <p>8. Ts08. Tidal strain calculated for the location of an event belonging to cluster C4.</p> <p>8.1 Column "Latitude", deg, latitude north of equator.<br> 8.2 Column "Longitude", deg, longitude east of Greenwich.<br> 8.3 Column "Depth", km.<br> 8.4 Column "Date", date in format yyyymmdd.<br> 8.5 Column "Time", time in format hour : minute : second.<br> 8.6 Column "Volume strain", nanostrain, tidal volume strain.<br> 8.7 Column "East-West strain", nanostrain, tidal East-West strain.<br> 8.8 Column "North-South strain", nanostrain, tidal North-South strain.<br> 8.9 Column "Vertical strain", nanostrain, tidal Vertical strain.</p> <p>9. File Ts09.xlsx Tidal confining stress values corresponding to the events in cluster C1.</p> <p>9.1 Column "Latitude", deg, latitude north of equator.<br> 9.2 Column "Longitude", deg, longitude east of Greenwich.<br> 9.3 Column "Depth", km.<br> 9.4 Column "Date", date in format yyyymmdd.<br> 9.5 Column "Time", time in format hour : minute : second.<br> 9.6 Column "Tides", Pa, tidal confining stress.</p> <p>10. Ts10.xlsx Hourly values of tidal confining stress obtained for the location of an earthquake belonging to subcluster C1A.</p> <p>10.1 Column "Year", y.<br> 10.2 Column "Month", m.<br> 10.3 Column "Day", d.<br> 10.4 Column "Hour", h.<br> 10.5 Column "Minute", min.<br> 10.6 Column "Second", s.<br> 10.7 Column "Latitude", deg, latitude north of equator.<br> 10.8 Column "Longitude", deg, longitude east of Greenwich.<br> 10.9 Column "Depth", m.<br> 10.10 Column "Tides", Pa, tidal confining stress.</p> <p>11. Ts11.xlsx Hourly values of tidal confining stress obtained for the location of an earthquake belonging to subcluster C1B.</p> <p>11.1 Column "Year", y.<br> 11.2 Column "Month", m.<br> 11.3 Column "Day", d.<br> 11.4 Column "Hour", h.<br> 11.5 Column "Minute", min.<br> 11.6 Column "Second", s.<br> 11.7 Column "Latitude", deg, latitude north of equator.<br> 11.8 Column "Longitude", deg, longitude east of Greenwich.<br> 11.9 Column "Depth", m.<br> 11.10 Column "Tides", Pa, tidal confining stress.</p> <p>12. Ts12.xlsx Data used to compare ocean tides to body tides</p> <p>12.1 Column "Cluster", number of the cluster (C1-C4).<br> 12.2 Column "Year", y.<br> 12.3 Column "Month", m.<br> 12.4 Column "Day", d.<br> 12.5 Column "Hour", h.<br> 12.6 Column "Minute", min.<br> 12.7 Column "Second", s.<br> 12.8 Column "Latitude", deg, latitude north of equator.<br> 12.9 Column "Longitude", deg, longitude east of Greenwich.<br> 12.10 Column "Depth", km.<br> 12.11 Column "Autonum", autonumeric code.<br> 12.12 Column "Ampl_ocean_hc", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress, ocean tides only.<br> 12.13 Column "Ampl_body_hc", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress, body tides only.</p> <p>13. Ts13.xlsx Data in Cluster C1 with M>=2</p> <p>13.1 Column "Year", y.<br> 13.2 Column "Month", m.<br> 13.3 Column "Day", d.<br> 13.4 Column "Hour", h.<br> 13.5 Column "Minute", min.<br> 13.6 Column "Second", s.<br> 13.7 Column "Latitude", deg, latitude north of equator.<br> 13.8 Column "Longitude", deg, longitude east of Greenwich.<br> 13.9 Column "Depth", km.<br> 13.10 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 13.11 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 13.12 Column "Magnitude", earthquake magnitude.<br> 13.13 Column "Autonum", autonumeric code.</p> <p>14. Ts14.xlsx Data in Cluster C2 with M>=2</p> <p>14.1 Column "Year", y.<br> 14.2 Column "Month", m.<br> 14.3 Column "Day", d.<br> 14.4 Column "Hour", h.<br> 14.5 Column "Minute", min.<br> 14.6 Column "Second", s.<br> 14.7 Column "Latitude", deg, latitude north of equator.<br> 14.8 Column "Longitude", deg, longitude east of Greenwich.<br> 14.9 Column "Depth", km.<br> 14.10 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 14.11 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 14.12 Column "Magnitude", earthquake magnitude.<br> 14.13 Column "Autonum", autonumeric code.</p> <p>15. Ts15.xlsx Data in Cluster C3 with M>=2</p> <p>15.1 Column "Year", y.<br> 15.2 Column "Month", m.<br> 15.3 Column "Day", d.<br> 15.4 Column "Hour", h.<br> 15.5 Column "Minute", min.<br> 15.6 Column "Second", s.<br> 15.7 Column "Latitude", deg, latitude north of equator.<br> 15.8 Column "Longitude", deg, longitude east of Greenwich.<br> 15.9 Column "Depth", km.<br> 15.10 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 15.11 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 15.12 Column "Magnitude", earthquake magnitude.<br> 15.13 Column "Autonum", autonumeric code.</p> <p>16. Ts16.xlsx Data in Cluster C4 with M>=2</p> <p>16.1 Column "Year", y.<br> 16.2 Column "Month", m.<br> 16.3 Column "Day", d.<br> 16.4 Column "Hour", h.<br> 16.5 Column "Minute", min.<br> 16.6 Column "Second", s.<br> 16.7 Column "Latitude", deg, latitude north of equator.<br> 16.8 Column "Longitude", deg, longitude east of Greenwich.<br> 16.9 Column "Depth", km.<br> 16.10 Column "Phase_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 16.11 Column "Amplitude_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 16.12 Column "Magnitude", earthquake magnitude.<br> 16.13 Column "Autonum", autonumeric code.</p> <p>17. Ts17.xlsx Declustered datasets D1, D2, D3 and D4</p> <p>17.1 Column "Dataset", number of the declustered dataset (D1-D4).<br> 17.2 Column "Year", y.<br> 17.3 Column "Month", m.<br> 17.4 Column "Day", d.<br> 17.5 Column "Latitude", deg, latitude north of equator.<br> 17.6 Column "Longitude", deg, longitude east of Greenwich.<br> 17.7 Column "Magnitude", earthquake magnitude.<br> 17.8 Column "Depth", km.<br> 17.9 Column "Cluster". It takes the value "+" if the event does not belong to any cluster identified during the declustering process. <br> Otherwise, the event is the largest in a cluster identified by the code shown in Table S4 in Supporting Information. </p> <p><br> 18. Ts18.xlsx Data used to detect tidal tilt correlations</p> <p>18.1 Column "Cluster", number of the cluster (C1-C4).<br> 18.2 Column "Year", y.<br> 18.3 Column "Month", m.<br> 18.4 Column "Day", d.<br> 18.5 Column "Hour", h.<br> 18.6 Column "Minute", min.<br> 18.7 Column "Second", s.<br> 18.8 Column "Latitude", deg, latitude north of equator.<br> 18.9 Column "Longitude", deg, longitude east of Greenwich.<br> 18.10 Column "Depth", km.<br> 18.11 Column "Autonum", autonumeric code.<br> 18.12 Column "Phase_tilt_NS", deg, tidal phase angle assigned to the event, calculated for tidal tilt (North-South component).<br> 18.13 Column "Ampl_tilt_NS", nrad, amplitude of the tidal half cycle in which the event occurs, calculated for tidal tilt (North-South component).<br> 18.14 Column "Phase_tilt_EW", deg, tidal phase angle assigned to the event, calculated for tidal tilt (East-West component).<br> 18.15 Column "Ampl_tilt_NS", nrad, amplitude of the tidal half cycle in which the event occurs, calculated for tidal tilt (East-West component).</p> <p>19. Ts19.xlsx Tidal stress calculated for the shallow magma reservior between 2011-07-01 and 2011-10-31.</p> <p>19.1 Column "Latitude", deg, latitude north of equator.<br> 19.2 Column "Longitude", deg, longitude east of Greenwich.<br> 19.3 Column "Depth", km.<br> 19.4 Column "Date", date in format yyyymmdd.<br> 19.5 Column "Time", time in format hour : minute : second.<br> 19.6 Column "East-West stress", Pa, tidal East-West stress.<br> 19.7 Column "North-South stress", Pa, tidal North-South stress.<br> 19.8 Column "Vertical stress", Pa, tidal Vertical stress.</p> <p>20. Ts20.xlsx Tidal stress calculated for the location of an event belonging to cluster C2.</p> <p>20.1 Column "Latitude", deg, latitude north of equator.<br> 20.2 Column "Longitude", deg, longitude east of Greenwich.<br> 20.3 Column "Depth", km.<br> 20.4 Column "Date", date in format yyyymmdd.<br> 20.5 Column "Time", time in format hour : minute : second.<br> 20.6 Column "East-West stress", Pa, tidal East-West stress.<br> 20.7 Column "North-South stress", Pa, tidal North-South stress.<br> 20.8 Column "Vertical stress", Pa, tidal Vertical stress.</p> <p>21. Ts21.xlsx Tidal stress calculated for the location of an event belonging to cluster C3.</p> <p>21.1 Column "Latitude", deg, latitude north of equator.<br> 21.2 Column "Longitude", deg, longitude east of Greenwich.<br> 21.3 Column "Depth", km.<br> 21.4 Column "Date", date in format yyyymmdd.<br> 21.5 Column "Time", time in format hour : minute : second.<br> 21.6 Column "East-West stress", Pa, tidal East-West stress.<br> 21.7 Column "North-South stress", Pa, tidal North-South stress.<br> 21.8 Column "Vertical stress", Pa, tidal Vertical stress.</p> <p>22. Ts22.xlsx Tidal stress calculated for the location of an event belonging to cluster C4.</p> <p>22.1 Column "Latitude", deg, latitude north of equator.<br> 22.2 Column "Longitude", deg, longitude east of Greenwich.<br> 22.3 Column "Depth", km.<br> 22.4 Column "Date", date in format yyyymmdd.<br> 22.5 Column "Time", time in format hour : minute : second.<br> 22.6 Column "East-West stress", Pa, tidal East-West stress.<br> 22.7 Column "North-South stress", Pa, tidal North-South stress.<br> 22.8 Column "Vertical stress", Pa, tidal Vertical stress.</p> <p>23. Ts23.xlsx Data used to detect tidal stress correlations in Phase 1 of the volcanic crisis (ocean tides only).</p> <p>23.1 Column "Year", y.<br> 23.2 Column "Month", m.<br> 23.3 Column "Day", d.<br> 23.4 Column "Hour", h.<br> 23.5 Column "Minute", min.<br> 23.6 Column "Second", s.<br> 23.7 Column "Latitude", deg, latitude north of equator.<br> 23.8 Column "Longitude", deg, longitude east of Greenwich.<br> 23.9 Column "Depth", km.<br> 23.10 Column "Phase_ocean_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 23.11 Column "Amplitude_ocean_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 23.12 Column "Magnitude", earthquake magnitude.<br> 23.13 Column "Autonum", autonumeric code.</p> <p>24. Ts24.xlsx Data used to detect tidal stress correlations in Phase 2 of the volcanic crisis (ocean tides only).</p> <p>24.1 Column "Year", y.<br> 24.2 Column "Month", m.<br> 24.3 Column "Day", d.<br> 24.4 Column "Hour", h.<br> 24.5 Column "Minute", min.<br> 24.6 Column "Second", s.<br> 24.7 Column "Latitude", deg, latitude north of equator.<br> 24.8 Column "Longitude", deg, longitude east of Greenwich.<br> 24.9 Column "Depth", km.<br> 24.10 Column "Phase_ocean_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 24.11 Column "Amplitude_ocean_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 24.12 Column "Magnitude", earthquake magnitude.<br> 24.13 Column "Autonum", autonumeric code.</p> <p>25. Ts25.xlsx Data used to detect tidal stress correlations in Phase 3 of the volcanic crisis (ocean tides only).</p> <p>25.1 Column "Year", y.<br> 25.2 Column "Month", m.<br> 25.3 Column "Day", d.<br> 25.4 Column "Hour", h.<br> 25.5 Column "Minute", min.<br> 25.6 Column "Second", s.<br> 25.7 Column "Latitude", deg, latitude north of equator.<br> 25.8 Column "Longitude", deg, longitude east of Greenwich.<br> 25.9 Column "Depth", km.<br> 25.10 Column "Phase_ocean_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 25.11 Column "Amplitude_ocean_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 25.12 Column "Magnitude", earthquake magnitude.<br> 25.13 Column "Autonum", autonumeric code.</p> <p>26. Ts26.xlsx Data used to detect tidal stress correlations in Phase 4 of the volcanic crisis (ocean tides only).</p> <p>26.1 Column "Year", y.<br> 26.2 Column "Month", m.<br> 26.3 Column "Day", d.<br> 26.4 Column "Hour", h.<br> 26.5 Column "Minute", min.<br> 26.6 Column "Second", s.<br> 26.7 Column "Latitude", deg, latitude north of equator.<br> 26.8 Column "Longitude", deg, longitude east of Greenwich.<br> 26.9 Column "Depth", km.<br> 26.10 Column "Phase_ocean_confining_stress", deg, tidal phase angle assigned to the event, calculated for tidal confining stress.<br> 26.11 Column "Amplitude_ocean_confining_stress", Pa, amplitude of the tidal half cycle in which the event occurs, calculated for tidal confining stress.<br> 26.12 Column "Magnitude", earthquake magnitude.<br> 26.13 Column "Autonum", autonumeric code.</p> <p>27. Ts27.xlsx Horizontal tidal stress (Earth tides only) calculated for the shallow magma reservior between 2011-07-01 and 2011-10-31.</p> <p>27.1 Column "Latitude", deg, latitude north of equator.<br> 27.2 Column "Longitude", deg, longitude east of Greenwich.<br> 27.3 Column "Depth", km.<br> 27.4 Column "Date", date in format yyyymmdd.<br> 27.5 Column "Time", time in format hour : minute : second.<br> 27.6 Column "Horizontal stress", Pa, tidal Horizontal stress.</p> <p>28. Ts28.xlsx Horizontal tidal stress (Earth tides only) calculated for the location of an event belonging to cluster C2.</p> <p>28.1 Column "Latitude", deg, latitude north of equator.<br> 28.2 Column "Longitude", deg, longitude east of Greenwich.<br> 28.3 Column "Depth", km.<br> 28.4 Column "Date", date in format yyyymmdd.<br> 28.5 Column "Time", time in format hour : minute : second.<br> 28.6 Column "Horizontal stress", Pa, tidal Horizontal stress.</p> <p>29. Ts29.xlsx Horizontal tidal stress (Earth tides only) calculated for the location of an event belonging to cluster C3.</p> <p>29.1 Column "Latitude", deg, latitude north of equator.<br> 29.2 Column "Longitude", deg, longitude east of Greenwich.<br> 29.3 Column "Depth", km.<br> 29.4 Column "Date", date in format yyyymmdd.<br> 29.5 Column "Time", time in format hour : minute : second.<br> 29.6 Column "Horizontal stress", Pa, tidal Horizontal stress.</p> <p>30. Ts30.xlsx Horizontal tidal stress (Earth tides only) calculated for the location of an event belonging to cluster C4.</p> <p>30.1 Column "Latitude", deg, latitude north of equator.<br> 30.2 Column "Longitude", deg, longitude east of Greenwich.<br> 30.3 Column "Depth", km.<br> 30.4 Column "Date", date in format yyyymmdd.<br> 30.5 Column "Time", time in format hour : minute : second.<br> 30.6 Column "Horizontal stress", Pa, tidal Horizontal stress.</p>
Extensive literature search for grayanotoxins and 5-hydroxymethylfurfural - summary tables and EndNote libraries
<p>An extensive literature search to identify and collect studies related to the toxicity of grayanotoxins and 5-hydroxymethylfurfural (5-HMF) was performed in the three databases PubMed, Web of Science and SciFinder® for six and four Areas, respectively. After combination of the searches from the three databases and removal of the duplicates, the total number of references for the grayanotoxins was 652 and for 5-HMF Area 1b was 3,862, for Area 2b was 37, for Area 3b was 221 and for Area 4b was 500. The evaluation of all retrieved references for relevance by screening the title and abstract (if available) and applying eligibility criteria (inclusion/exclusion) resulted in a total number of relevant references for the grayanotoxins for Area 1a of 71, for Area 2a of 3, for Area 3a of 5, for Area 4a of 75, for Area 5a of 141, and for Area 6a of 78 and for 5-HMF for Area 1b of 55, for Area 2b of 14, for Area 3b of 15 and for Area 4b of 8.</p>
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data - Table S03 - All detected SVs.xlsx
<p>Large concatenated results table on all samples of the Dr. Disco study.</p> <p> </p>
Football Competitions from Skysports.com tables
<p>The dataset collects all the football leagues stored in the tables from skysports.com.</p> <p>In this file we can find all the national leagues and international competitions.</p>
Table 6: Pairwise comparison matrix – driver perceptions
<p>Pairwise comparison matrix for driver perception</p>
Supplemental table S1 for Viengkhou et al.
<p>Supplemental table 1 for manuscript by Viengkhou et al., 2020</p>
Supplementary Tables ST1-6 for Isoniazid Systematic Review
<p>Supplementary Material for a systematic review of mutations associated with isoniazid Resistance</p>
Supplementary table 2
<p>Summarization of the main genes identified in the analysis of articles on the improvement of banana to fusarium wilt carried out in the last ten years.</p>
SUPPLEMENTARY TABLE 3 in Importance of genetic data in resolving cryptic species: A century old problem of understanding the distribution of Minervarya syhadrensis Annandale 1919 (Anura: Dicroglossidae)
SUPPLEMENTARY TABLE 3. Call properties measurements of Minervarya species A and Minervarya species B in the present study.
SUPPLEMENTARY TABLE 2 in Importance of genetic data in resolving cryptic species: A century old problem of understanding the distribution of Minervarya syhadrensis Annandale 1919 (Anura: Dicroglossidae)
SUPPLEMENTARY TABLE 2. Morphometric data (in mm) of type specimens of Minervarya caperata deposited at BNHS and described by Kuramoto et al. (2007).
SUPPLEMENTARY TABLE 1 in Importance of genetic data in resolving cryptic species: A century old problem of understanding the distribution of Minervarya syhadrensis Annandale 1919 (Anura: Dicroglossidae)
SUPPLEMENTARY TABLE 1. Morphometric data (in mm) of Minervarya species A (M. syhadrensis) and Minervarya species B (M. agricola / M. granosa) from Pune
Continental-scale genomic analysis suggests shared post-admixture adaptation in the Americas - Z scores tables
<p><strong>Zscores20Pop. </strong>20pop dataset Z scores by SNP in the three ancestries (A. Africa B. Europe C. America).</p> <p><strong>Zscores1090Ind.</strong> 1090Ind dataset Z scores by SNP in the three ancestries (A. Africa B. Europe C. America).</p>
Data from: Life table invasion models: spatial progression and species-specific partitioning
Biological invasions are increasingly being considered important spatial processes that drive global changes, threatening biodiversity, regional economies, and ecosystem functions. A unifying conceptual model of the invasion dynamics could serve as a useful tool for comparison and classification of invasion processes involving different species across large geographic ranges. By dividing these geographic ranges that are subject to invasions into discrete spatial units we here conceptualize the invasion process as the transition from pristine to invaded spatial units. We use California cities as the spatial units and a long-term database of invasive tropical tephritids to characterize the invasion patterns. A new life-table method based on insect demography, including the progression model of invasion stage transition and the species-specific partitioning model of multispecies invasions, was developed to analyze the invasion patterns. The progression model allows us to estimate the probability and rate of transition, for individual cities, from pristine to infested stages and subsequently differentiate first year of detection from detection recurrences. Importantly, we show that the interval of invasive tephritid recurrence in a city declines with increasing invasion stages of the city. The species-specific partitioning model revealed profound difference in invasion outcome depending on which tephritid species was first detected (and then locally eradicated) in the early stage of invasion. Taken together, we discuss how these two life-table invasion models can cast new light on existing invasion concepts; in particular, on formulating invasion dynamics as the state transition of cities and partitioning species-specific role during multispecies invasions. These models provide a new set of tools for predicting the spatiotemporal progression of invasion and providing early warnings of recurrent invasions for efficient management.
Data from: Ancient hybrid origin of the eastern wolf not yet off the table: a comment on Rutledge et al.
A recent study of North American canids by Rutledge et al. (Biol. Lett. 11, 20150303 (doi:10.1098/rsbl.2015.0303)) refutes the hypothesized hybrid origin of the eastern wolf (EW) based on genomic evidence against very recent hybridization. However, the analyses do not rule out the possibility of more ancient hybridization. Claims to have resolved the evolutionary origin of the EW are therefore inappropriate. Importantly, though, we plead that uncertainty about the ancient history of the taxon should not affect current conservation policy.
Palms and trees resist extreme drought in Amazon forests with shallow water tables
1. The intensity and frequency of severe droughts in the Amazon region has increase in recent decades. These extreme events are associated with changes in forest dynamics, biomass and floristic composition. However, most studies of drought response have focused on upland forests with deep water tables, which may be especially sensitive to drought. Palms, which tend to dominate the less well-drained soils, have also been neglected. The relative neglect of shallow water tables and palms is a significant concern for our understanding of tropical drought impacts, especially as one third of Amazon forests grow on shallow water tables (<5m deep). 2. We evaluated the drought response of palms and trees in forests distributed over a 600 km transect in central-southern Amazonia, where the landscape is dominated by shallow water table forests. We compared vegetation dynamics before and following the 2015-16 El Nino drought, the hottest and driest on record for the region (-214 mm of cumulative water deficit). 3. We observed no change in stand mortality rates and no biomass loss in response to drought in these forests. Instead, we observed an increase in recruitment rates, which doubled to 6.78% y-1 ± 4.40 (mean ± SD) during 2015-16 for palms and increased by half for trees (to 2.92% y-1 ± 1.21), compared to rates in the pre-El-Nino interval. Within these shallow water table forests, mortality and recruitment rates varied as a function of climatic drought intensity and water table depth for both palms and trees, with mortality being greatest in climatically and hydrologically wetter environments and recruitment greatest in drier environments. Across our transect there was a significant increase over time in tree biomass. 4. Synthesis: Our results indicate that forests growing over shallow water tables – relatively under-studied vegetation that nonetheless occupies one-third of Amazon forests - are remarkably resistant to drought. These findings are consistent with the hypothesis that local hydrology and its interactions with climate strongly constrain forest drought effects, and has implications for climate change feedbacks. This work enhances our understanding of integrated drought effects on tropical forest dynamics and highlights the importance of incorporating neglected forest types into both the modeling of forest climate responses and into public decisions about priorities for conservation.
Harrison Marble Top Table
For more information about this item visit: https://bhpsite.org/ Source: Objaverse 1.0 / Sketchfab
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.