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3,172
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3,172 results for “Publications”
Woerthersee sediment core data for the publication "Validation of seismic hazard curves using a calibrated 14 ka lacustrine record in the Eastern Alps, Austria"
<p>This dataset comprises sediment core data of Wörthersee, a lake in the Eastern European Alps, Austria. Together with a dataset comprising the seismic data (10.5281/zenodo.6479186), this is the basis for the publication Daxer et al. "Validation of seismic hazard curves using a calibrated 14 ka lacustrine record in the Eastern Alps, Austria".</p> <p>The files contain the following data:</p> <ul> <li>Core images Long Cores.zip: Core images of the Wörthersee Kullenberg-type long cores acquired with an ITRAX core scanner</li> <li>Core images Short Cores.zip: Core images of the Wörthersee gravity short cores (hammer-coring or trigger cores of the Kullenberg system) acquired with an ITRAX core scanner; provided as .tif files</li> <li>CT data WOER18-L5-X-Dicom.zip: X-ray computed tomography data acquired with a Siemens SOMATOM Definition AS (voxel size 0.2 x 0.2 x 0.3 mm); provided in DICOM format</li> <li>MSCL data.zip: Data acquired with a Geotek Multi-sensor core logger (e.g. magnetic susceptibility and gamma density); provided as Excel spreadsheets</li> <li>XRF data.zip: X-ray fluorescence data acquired with a ITRAX core scanner; provided in .csv format</li> </ul>
Dataset II related to the publication: In silico Evaluation of the Thr58-associated Conserved Water with KRAS Switch-II Pocket Binders
<p>Desmond trajectories of simulations conducted with TIP3P water model related to the publication:</p> <p>Leini R, Pantsar T: In Silico Evaluation of the Thr58-Associated Conserved Water with 2 KRAS Switch-II Pocket Binders. J. Chem. Inf. Model. [accepted] https://doi.org/10.1021/acs.jcim.2c01479</p> <ul> <li>Individual .zip files contain the Desmond trajectories and -out.cms -files.</li> </ul> <p>Related datasets: 10.5281/zenodo.7656467 and 10.5281/zenodo.7342311</p>
Dataset III related to the publication: In silico Evaluation of the Thr58-associated Conserved Water with KRAS Switch-II Pocket Binders
<p>Desmond trajectories of simulations conducted with TIP4P water model related to the publication:</p> <p>Leini R, Pantsar T: In Silico Evaluation of the Thr58-Associated Conserved Water with 2 KRAS Switch-II Pocket Binders. J. Chem. Inf. Model. [accepted] https://doi.org/10.1021/acs.jcim.2c01479</p> <ul> <li>Individual .zip files contain the Desmond trajectories and -out.cms -files.</li> </ul> <p>Related datasets: 10.5281/zenodo.7656467 and 10.5281/zenodo.7341954</p>
single-cell RNAseq data (data set 20) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset20) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from breast cancer samples downloaded from the GEO website (GSE180286)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p> <p> </p>
single-cell RNAseq data (data set 18) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset18) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from Liver cancer set 1 samples downloaded from the GEO website (GSE125449)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 17) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset17 was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from PBMC metastatic MCC samples downloaded from the GEO website (GSE117988)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 12) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset12) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor10 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 16) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset16) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from CD4 T-cells in PACA samples downloaded from the GEO website (GSE156728)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p> <p> </p>
single-cell RNAseq data (data set 11) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset11) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor9 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 14) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset14) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor12 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 9) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset9) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor7 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 8) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset8) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor6 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 7) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset7) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor5 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 19) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset19) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from Liver cancer set 2 samples downloaded from the GEO website (GSE125449)<strong>. </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
Discretized bulk data by the discretization step of rFASTCORMICS used in in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>Bulk data RNAseq data were downloaded from GEO, GTEX, and other sources (see below) and discretized by the discretization step of rFASTCORMICS (Pacheco et al, 2019) used in the optimization step in scFASTCORMICS:</p> <p>CRC bulk RNAseq data were obtained from Lee et al(2020) <br> CRC control (NM) was downloaded from GSE81861 (GTEX, Healthy colon from)</p> <p>Pancreatic Human islet bulk RNAseq data was downloaded from EBI Expression Atlas (Pancreatic islet cells)</p> <p>Immune cells in pancreatic carcinoma bulk data were obtained from GEO (GSE156278)</p> <p>liver and breast cancer bulk RNAseq data were obtained from the TCGA (GSE62944)</p> <p> </p> <p>rFASTCORMICS and tutorial on rFASTCORMICS can be found: https://github.com/sysbiolux</p> <p> </p> <p> </p> <p> </p> <p><br> </p>
single-cell RNAseq data (data set 5) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset5) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor3 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 15) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset15) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from CD8 T-cells in PACA samples downloaded from the GEO website (GSE156728)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 4) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset4) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor2 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p> </p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 3) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset3) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from normal Pancreas donor1 downloaded from the GEO website (GSE114297)<strong>. </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p> <pre> </pre>
Infocomunication Literacy and Public Governance - Dataset
<p>Dataset - row data collected in the application of a research questionnaire using Lime Survey.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.