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Supplementary material 1 from: Dooley KE, Niemiller KDK, Sturm N, Niemiller ML (2022) Rediscovery and phylogenetic analysis of the Shelta Cave Crayfish (Orconectes sheltae Cooper & Cooper, 1997), a decapod (Decapoda, Cambaridae) endemic to Shelta Cave in northern Alabama, USA. Subterranean Biology 43: 11-31. https://doi.org/10.3897/subtbiol.43.79993
Table S1
Supplementary material 1 from: Rossetti G, Stoch F, Mazzini I (2022) A reassessment of the origin and distribution of the subterranean genus Pseudolimnocythere Klie, 1938 (Ostracoda, Loxoconchidae), with description of two new species from Italy. Subterranean Biology 43: 33-60. https://doi.org/10.3897/subtbiol.43.82158
Figures S1–S5
Supplementary material 1 from: Premate E, Fišer Ž, Kuralt Ž, Pekolj A, Trajbarič T, Milavc E, Hanc Ž, Kostanjšek R (2022) Behavioral observations of the olm (Proteus anguinus) in a karst spring via direct observations and camera trapping. Subterranean Biology 44: 69-83. https://doi.org/10.3897/subtbiol.44.87295
Figure S1
FIGURE 3 in DNA barcode data confirm the placement of subterranean Noemacheilus (Troglocobitis) starostini Parin 1983 in the genus Paracobitis (Teleostei, Nemacheilidae)
FIGURE 3. Entrance to the Suvlyoyuk sinkhole, Turkmenistan.
FIGURE 1 in Subterranean millipedes (Diplopoda) of the Iberian Peninsula
FIGURE 1. Accumulated number of troglobiont millipedes described from the Iberian Peninsula.
Supplementary material 3 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Table 1 : Explanation note: Collection and specimen data for material examined in this study.
Supplementary material 4 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Table 2 : Explanation note: PCR primers and amplification conditions for sampled gene fragments.
Supplementary material 3 from: Angyal D, Balázs G, Zakšek V, Krízsik V, Fišer C (2015) Redescription of two subterranean amphipods Niphargus molnari Méhely, 1927 and Niphargus gebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position. ZooKeys 509: 53-85. https://doi.org/10.3897/zookeys.509.9820
Original descriptions of Niphargus molnari and Niphargus gebhardti:
Supplementary material 2 from: Angyal D, Balázs G, Zakšek V, Krízsik V, Fišer C (2015) Redescription of two subterranean amphipods Niphargus molnari Méhely, 1927 and Niphargus gebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position. ZooKeys 509: 53-85. https://doi.org/10.3897/zookeys.509.9820
List of taxa and sequence data used in phylogenetic analysis:
Supplementary material 1 from: Angyal D, Balázs G, Zakšek V, Krízsik V, Fišer C (2015) Redescription of two subterranean amphipods Niphargus molnari Méhely, 1927 and Niphargus gebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position. ZooKeys 509: 53-85. https://doi.org/10.3897/zookeys.509.9820
Protocols and thermo profiles used in molecular studies:
Supplementary material 2 from: Gutjahr S, Schmidt S, Hahn H (2014) A proposal for a groundwater habitat classification at local scale. Subterranean Biology 14: 25-49. https://doi.org/10.3897/subtbiol.14.5429
Output of the one-way ANOSIMS' pairwise test.:
Supplementary material 3 from: Gutjahr S, Schmidt S, Hahn H (2014) A proposal for a groundwater habitat classification at local scale. Subterranean Biology 14: 25-49. https://doi.org/10.3897/subtbiol.14.5429
Output of a Canonical Analysis of Principal Coordinates (CAP).:
Figure 4 from: Costa BG, Pellegrini TG, Bernardi LFO, Ferreira RL (2017) Notes on predator-prey relationships among Tanypodinae larvae (Diptera, Chironomidae) and mites (Acariformes) in Brazilian subterranean aquatic environments. Subterranean Biology 22: 67-74. https://doi.org/10.3897/subtbiol.22.13925
Figure 4 - A General view of gut contents from a specimen of Tanypodinae (Chironomidae), where the arrow shows an specimen of Tyrophagus sp. (Acariformes: Sarcoptiformes: Acaridae) among alimentary items B Detail view of the partially digested Tyrophagus sp. C Detail of specimen already partially digested which possibly belongs to the family Frontipodopsidae (Acariformes: Trombidiformes).
Figure 3 from: Costa BG, Pellegrini TG, Bernardi LFO, Ferreira RL (2017) Notes on predator-prey relationships among Tanypodinae larvae (Diptera, Chironomidae) and mites (Acariformes) in Brazilian subterranean aquatic environments. Subterranean Biology 22: 67-74. https://doi.org/10.3897/subtbiol.22.13925
Figure 3 - A–C Teratopiidae (Acariformes: Sarcoptiformes) found in gut contents of four specimens of Tanypodinae (Chironomidae).
Figure 2 from: Costa BG, Pellegrini TG, Bernardi LFO, Ferreira RL (2017) Notes on predator-prey relationships among Tanypodinae larvae (Diptera, Chironomidae) and mites (Acariformes) in Brazilian subterranean aquatic environments. Subterranean Biology 22: 67-74. https://doi.org/10.3897/subtbiol.22.13925
Figure 2 - Mites found in gut contents of four specimens of Tanypodinae (Chironomidae). A Two examples of Limnesiidae larvae (Acariformes: Trombidiformes), probably belonging to the genus Limnesia B–D partially digested mites, probably Hydrachnidia.
Figure 7 from: Conde-Vela VM (2017) The troglomorphic adaptations of Namanereidinae (Annelida, Nereididae) revisited, including a redescription of Namanereis cavernicola (Solís-Weiss & Espinasa, 1991), and a new Caribbean species of Namanereis Chamberlin, 1919. Subterranean Biology 23: 19-28. https://doi.org/10.3897/subtbiol.23.13701
Figure 7 - Proposed evolution of jaws in Namanereidinae. A Jaws with fully dentate cutting edge, layer almost inconspicuous in basal teeth B Layer increases their extension among basal teeth and reaches medial ones C Layer covers completely basal and medial teeth, and reaches subterminal ones D Teeth recede and become narrow, layer covers subterminal teeth excepting the last two E Just remnants of teeth are visible if any, layer increases its extension F Teeth fully replaced by the layer. Stages B and C in most Namalycastis species and Namanereis with serrated cutting edge; stage D as in Namanereis stocki and N. tiriteae; stage E as in Namanereis socotrensis; stage F as in Namanereis with bifid jaws and Namalycastis occulta.
Figure 4 from: Conde-Vela VM (2017) The troglomorphic adaptations of Namanereidinae (Annelida, Nereididae) revisited, including a redescription of Namanereis cavernicola (Solís-Weiss & Espinasa, 1991), and a new Caribbean species of Namanereis Chamberlin, 1919. Subterranean Biology 23: 19-28. https://doi.org/10.3897/subtbiol.23.13701
Figure 4 - Histograms showing length ratios of some troglomorphic features among Namalycastis (boldface) and Namanereis (lightface) species. A Ratios between length of tentacular cirri (Lpt) and wide of prostomium (Wp) B Difference (Dd-v) between ratios of dorsalmost (Dm) and ventralmost (Vm) falcigers at chaetiger 10. Sorted from highest to lowest ratios; asterisks highlight stygobiont Namanereis.
Figure 2 from: Conde-Vela VM (2017) The troglomorphic adaptations of Namanereidinae (Annelida, Nereididae) revisited, including a redescription of Namanereis cavernicola (Solís-Weiss & Espinasa, 1991), and a new Caribbean species of Namanereis Chamberlin, 1919. Subterranean Biology 23: 19-28. https://doi.org/10.3897/subtbiol.23.13701
Figure 2 - Namanereis christopheri sp. n. A, B, F–O Holotype LACM-AHF 1227 C–E paratype LACM-AHF 1229 A Anterior end, dorsal view B Posterior end, dorsal view C Close-up of prostomium D Areas V and VI, pharynx dissected E Right jaw, dorsal view F Chaetiger 5, right parapodium G Chaetiger 21, right parapodium H Chaetiger 49, right parapodium I Chaetiger 90, right parapodium J Supra-acicular sesquigomph spiniger, chaetiger 49 K Sub-acicular heterogomph falciger, chaetiger 49 L Supra-acicular heterogomph falciger, chaetiger 49 M Sub-acicular heterogomph falciger, chaetiger 49 N Close-up of blade, supra-acicular sesquigomph spiniger, chaetiger 49 O Close-up of blade, supra-acicular heterogomph falciger, chaetiger 49. Scale bars: 0.5 mm (A–D); 0.1 mm (E); 0.1 mm (F–I); 50 µm (J, K); 30 µm (L, M); 10 µm (N, O).
Figure 1 from: Conde-Vela VM (2017) The troglomorphic adaptations of Namanereidinae (Annelida, Nereididae) revisited, including a redescription of Namanereis cavernicola (Solís-Weiss & Espinasa, 1991), and a new Caribbean species of Namanereis Chamberlin, 1919. Subterranean Biology 23: 19-28. https://doi.org/10.3897/subtbiol.23.13701
Figure 1 - Namanereis cavernicola (Solís-Weiss & Espinasa, 1991). A–H Paratype USNM 136559 A Anterior end, dorsal view B Close-up of prostomium C Posterior end, dorsal view D Supra-acicular falciger, chaetiger 62 E Sub-acicular falciger, chaetiger 62 F Chaetiger 5, right parapodium G Chaetiger 20, right parapodium H Chaetiger 62, right parapodium. Scale bars: 1 mm (A); 0.2 mm (B, F–H); 0.5 mm (C); 10 µm (D, E).
Figure 6 from: Conde-Vela VM (2017) The troglomorphic adaptations of Namanereidinae (Annelida, Nereididae) revisited, including a redescription of Namanereis cavernicola (Solís-Weiss & Espinasa, 1991), and a new Caribbean species of Namanereis Chamberlin, 1919. Subterranean Biology 23: 19-28. https://doi.org/10.3897/subtbiol.23.13701
Figure 6 - Chaetal arrangement of some namanereidins referred in this study. A Scheme showing the parapodial fascicles and their positions in relation to neuroaciculum B Neuropodial lobe of right parapodium from chaetiger 10 of Namalycastis occulta, showing the position of chaetae in type D species when mounted C–E Chaetal arrangement of types A, C and E, and their variants found in literature (modified from Glasby 1999, Fig. 1).
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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