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2,052 results for “tree species”
FIGURE 1. The Bayesian consensus tree inferred from D2 in Nematodes from galls on Myrtaceae. III. Fergusobia from flower bud and stigma galls on Eucalyptus, with descriptions of four new species
FIGURE 1. The Bayesian consensus tree inferred from D2/D3 under TVM+I+G model (lnL=4001.6121; freqA=0.2903; freqC=0.1443; freqG=0.2394; freqT=0.3259; R(a)=0.8475; R(b)=3.4236; R(c)=1.9889; R(d)=0.455; R(e)=3.4236; R(f)=1; Pinva=0.522; Shape=0.5933). Posterior probability values exceeding 50% are given on appropriate clades. (Tree labels comprise nematode species, location (Australia state code), gall type, host plant species and GenBank accession number.
FIGURE 3. Bayesian majority-rule consensus tree showing results from a in New species of Mouse Spiders (Araneae: Mygalomorphae: Actinopodidae: Missulena) from the Pilbara region, Western Australia
FIGURE 3. Bayesian majority-rule consensus tree showing results from a partitioned phylogenetic analysis of the COI mtDNA dataset (25 taxa, 826 bp). Species described in this study are colour-coded in orange. The three major uncovered lineages are shaded light blue, green and red. Posterior probabilities are calculated in %. Bioregions (see Fig. 2A): AW – Avon Wheatbelt, GAS – Gascoyne, OVP – Ord Victoria Plain, JAR – Jarrah Forest, MUR – Murchison.
FIGURE 4. Bayesian posterior probability tree was reconstructed from 16S in A new species of the genus Gracixalus (Amphibia: Anura: Rhacophoridae) from Southern Guangxi, China
FIGURE 4. Bayesian posterior probability tree was reconstructed from 16S ribosomal RNA mitochondrial gene sequences with Philautus aurifasciatus, Kurixalus eiffingeri and K. odontotarsus as outgroups. Maximum-likelihood tree produced nearidentical topology. Two reliability indices are given on nodes: the Bayesian posterior probabilities/the maximum likelihood bootstrap percentages.
FIGURE 7. Maximum likelihood tree for all 28 in Mud-packing frog: A novel breeding behaviour and parental care in a stream dwelling new species of Nyctibatrachus (Amphibia, Anura, Nyctibatrachidae)
FIGURE 7. Maximum likelihood tree for all 28 nominal species of Nyctibatrachus and an outgroup (Indirana sp.) based on mitochondrial 16S rRNA. Number at the branches indicate bootstrap values. Bootstrap values less than 50 are indicated with an asterisk. Area marked with grey belong to N. sanctipalustris clade.
FIGURE 2. Maximum Likelihood tree for 33 in Systematic status of Fejervarya (( Amphibia, Anura, Dicroglossidae) from South and SE Asia with the description of a new species from the Western Ghats of Peninsular India
FIGURE 2. Maximum Likelihood tree for 33 dicroglossid taxa based on 6879 bp of mitochondrial (16S and 12S) and nuclear genes (BDNF, Rhod, Tyr, RAG-1, RAG-2, NCX1, and CXCR4).
FIGURES 7–16. Dolichothrips species. Head & pronotum 7–9 in Taxonomic studies on Dolichothrips (Thysanoptera: Phlaeothripinae), pollinators of Macaranga trees in Southeast Asia (Euphorbiaceae)
FIGURES 7–16. Dolichothrips species. Head & pronotum 7–9: (7) macarangai; (8) fialae sp.n.; (9) utae sp.n. Mesonotum and metanotum 10–15: (10) chikakoae sp.n.; (11) eriae sp.n.; (12) fialae sp.n.; (13) utae sp.n.; (14) franae sp.n.; (15) reuteri; (16) indicus mesonotum and pelta.
FIGURE 6 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 6. Palmar view of hand (A) and platar view foot (B) of holotype (MZB Amph 21831) Rhacophorus indonesiensis sp. nov. after preservation. Scale bar = 5 mm.
FIGURE 2 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 2. The ML tree generated from a fragment of mitochondrial16S rRNA gene.?Numbers above and below represent the bootstrap support values for NJ and ML inferences.
FIGURE 5 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 5. Dorsal and ventral views of male holotype (MZB Amph 21831) of Rhacophorus indonesiensis sp. nov. after preservation (A and B) and after euthanasia (C and D). Scale bar=5 mm.
FIGURE 3 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 3. Dorsolateral view of Rhacophorus indonesiensis sp. nov. in life (A) adult male paratype MZB Amph 23624 from Teluk Nauli, diurnal coloration, (B) adult male paratype MZB Amph 23617 from Teluk Nauli, diurnal coloration, (C) adult male paratype MZB Amph 23620 from Teluk Nauli, nocturnal coloration, (D) adult male paratype MZB Amph 23628 from Sungai Durian, nocturnal coloration. Not to scale.
FIGURE 4 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 4. Adult male paratype of Rhacophorus indonesiensis sp. nov. MZB Amph 21847 and a non-vouchered female Rhacophorus indonesiensis sp. nov. from Birun, showing nocturnal coloration. Not to scale.
FIGURE 1 in A new species of tree frog genus Rhacophorus from Sumatra, Indonesia (Amphibia, Anura)
FIGURE 1. Map of Sumatra showing the known localities of Rhacophorus indonesiensis sp. nov. (solid diamonds). Map modified from Sadalmelik (2007).
FIGURE 4. Majority-rule consensus tree derived from a in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 4. Majority-rule consensus tree derived from a partitioned Bayesian inference analysis of concatenated DNA sequences of the 12S, 16S, COX1, COB, RAG1, KIAA1239, SACS, and TTN genes (6244 bp), showing relationships among species of the Cophylinae. Numbers at nodes are posterior probabilities (first number; values>0.95 bold) and maximum parsimony bootstrap values in percent (second value;>70% bold). The grey box highlights the included species of the genera Cophyla and Platypelis, which form two highly supported and reciprocally monophyletic groups.
FIGURE 7. Majority consensus Bayesian tree generated from partial cytochrome b in Description of a new species of the Miniopterus aelleni group (Chiroptera: Miniopteridae) from upland areas of central and northern Madagascar
FIGURE 7. Majority consensus Bayesian tree generated from partial cytochrome b sequence (725 bp), illustrating phylogenetic position of Miniopterus ambohitrensis sp. nov. Values at nodes represent Bayesian posterior probability followed by maximum likelihood (ML) bootstrap support. An asterisk (*) indicates that the node was fully supported in both the Bayesian and ML analyses, i.e., posterior probability 0.95 or greater and a bootstrap support value 85 or greater. The first value at the node is the posterior probability (Bayesian); the second is the bootstrap value derived from the maximum likelihood analysis (ML). The Bayesian analysis was run using MrBayes 3.2 (Huelsenbeck & Ronquist 2001; Ronquist et al. 2012) for 2,000,000 generations. The ML analysis was run using Garli 2.01 (Zwickl 2006) with bootstrap replicates set to 1,000. The nucleotide substitution model HKY was applied. Specimens obtained from type specimens are indicated by bolding and shading.
FIGURE 3. Majority-rule consensus tree derived from a in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 3. Majority-rule consensus tree derived from a partitioned Bayesian inference analysis of DNA sequences of the nuclear RAG1 gene (503 bp), showing relationships among species of Cophyla. Numbers at nodes are posterior probabilities (only values>0.9 shown). The tree was rooted with the same outgroups as in Fig. 2 (removed for better graphical representation).
FIGURE 6. Phylogenetic tree for 15 in A new species of the alpheid shrimp genus Salmoneus Holthuis, 1955 (Decapoda: Caridea) from the Seto Inland Sea, Japan
FIGURE 6. Phylogenetic tree for 15 species of Salmoneus and Jengalpheops rufus Anker & Dworschak, 2007 used as an outgroup taxon; obtained by ML analysis of 16S rRNA gene sequences using the TVM + G + I substitution model. The best tree with the highest log likelihood (-1870.53) is shown. Bootstrap supports of greater than 80% are indicated at nodes as percentage values. There was a total of 514 bp in the final dataset trimmed with GBlocks.
Dataset for: Variations in the reproductive cycle of Bornean montane tree species along elevational gradients on ultrabasic and non-ultrabasic soils
<p><span>Although lowland tree species in the ever-wet regions of Southeast Asia are characterised by the supra-annual cycle of reproduction, the reproductive phenology of montane tree species remains poorly understood. In this study, we investigated the reproductive phenology of montane tree species using litter samples that were collected every two weeks from six rainforest sites, consisting of three elevations (1700, 2700, and 3100 m), on Mount Kinabalu, Borneo. At each elevation, one site was on infertile ultrabasic soil and one was on relatively fertile non-ultrabasic soil. We used a composite sample from 10 or 20 litter traps per site and sorted it by species. Therefore, the obtained data captured reproductive phenology in the population of each species rather than in an individual tree. Ten-year time series of flower and fruit litterfall were obtained for 30 and 39 tree species, respectively. Fourier analysis was used to identify the dominant cycle of each time series. The most abundant cycle across species was supra-annual, followed by sub-annual, and annual cycles. Many species at higher elevations showed supra-annual cycles of flower litterfall, whereas species in the 1700 m sites often showed annual or sub-annual cycles regardless of soil type. No systematic differences were found among sites for fruit litterfall. Mechanisms underlying these elevational patterns in the reproductive cycle remain unclear but may include more </span>severe El Niño droughts, <span>lower primary productivity, lower soil fertility, and the absence of some sub-annually or annually reproducing families at higher elevations.</span></p>
FIGURE 1 in Lophopetalum tanahgambut, a new endemic giant tree species from peat swamp forest of Sumatera, Indonesia, with the first pseudoverticillate leaf arrangement in genus Lophopetalum (Celastraceae)
FIGURE 1. Lophopetalum tanahgambut Randi, Utteridge & Wijedasa. A. Base of the trunk on mature tree. B. Knee roots system. C. Twig with infructescence. D. Adaxial surface (upper) and abaxial surface (below) of leaves. E. Young tip of twig with three pseudoverticillate leaves. F. Winged petiole and base of blade. G. Leaf apex. H. Older branch with four pseudoverticillate leaves. All photos by A. Randi from holotype (Randi GB-129).
FIGURE 2 in Lophopetalum tanahgambut, a new endemic giant tree species from peat swamp forest of Sumatera, Indonesia, with the first pseudoverticillate leaf arrangement in genus Lophopetalum (Celastraceae)
FIGURE 2. Lophopetalum tanahgambut Randi, Utteridge & Wijedasa. A. Panicle. B. Anthesis flower and buds. C. Flower (side view). D. Flower (top view). E. Fruit (side view). F. Cross section of fruit. G. Ripe fruit splits and seeds. Photos A–D from A. Randi (Randi GB-150); photos E–G from A. Randi (Randi GB-141).
Species of Acantholichen occurring only in the Neotropics show a high degree of endemism (Dal Forno et al. 2016). Of the seven species now recognized in this genus (Table 2), 71.4% (5) are known only from South America. As with Dictyonema, Acantholichen seem to be specific to substrate type and appears in the Andean small forest occurring on mosses in tree bark inhabiting mostly exposed habitats. Cyphellostereum is also represented by a high number of species restricted to the Neotropics [6 (66.6%)], while one is known only from North America, one from Southeastern United States and Puerto Rico, and another species is known only from Borneo and Fiji (Table 2). It is probably due to their unusual appearance that these lichens are getting confused with free-living cyanobacteria colonies, and that there are still undescribed species in the Neotropics. in Eight new species of lichenized Basidiomycota in the genera Acantholichen, Cyphellostereum and Dictyonema s.str. (Agaricales, Hygrophoraceae) from northern South America
Species of Acantholichen occurring only in the Neotropics show a high degree of endemism (Dal Forno et al. 2016). Of the seven species now recognized in this genus (Table 2), 71.4% (5) are known only from South America. As with Dictyonema, Acantholichen seem to be specific to substrate type and appears in the Andean small forest occurring on mosses in tree bark inhabiting mostly exposed habitats. Cyphellostereum is also represented by a high number of species restricted to the Neotropics [6 (66.6%)], while one is known only from North America, one from Southeastern United States and Puerto Rico, and another species is known only from Borneo and Fiji (Table 2). It is probably due to their unusual appearance that these lichens are getting confused with free-living cyanobacteria colonies, and that there are still undescribed species in the Neotropics.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.