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249
datasets available to search
ShareScore release 0.9.0
Dataset results
249 results for “3D Structure”
Droplet-based high-throughput 3D genome structure mapping of single cells with simultaneous transcriptomics (b23-mouse-brain)
GEO Series GSE285809. Mus musculus. 1 samples. Type: Other.
The variation of 3D Chromosome Structure were tested during germline stem cell differentiation [HiC]
GEO Series GSE163929. Mus musculus. 8 samples. Type: Other.
Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming
GEO Series GSE76481. Mus musculus. 85 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by array.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [RNA-Seq]
GEO Series GSE201354. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
3D chromosome structure reveals unique signatures involved in mouse female germline stem cells and their development II
GEO Series GSE175730. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
3D Chromosome Structure Can Reveal Stem Cell Signatures (RNA-Seq)
GEO Series GSE126013. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription
GEO Series GSE211287. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Meiotic cohesin RAD21L shapes 3D genome structure and transcription in the male germline [scRNA-seq]
GEO Series GSE297601. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin
GEO Series GSE166041. Mus musculus. 42 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Droplet-based high-throughput 3D genome structure mapping of single cells with simultaneous transcriptomics (b3-mouse-brain)
GEO Series GSE285811. Mus musculus. 1 samples. Type: Other.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [RNA-seq]
GEO Series GSE200691. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [1000U]
GEO Series GSE278191. Homo sapiens. 96 samples. Type: Other.
PDGF receptors and signaling are required for 3D-structure formation and differentiation of human iPSCs-derived hepatic spheroids
GEO Series GSE215379. Homo sapiens. 8 samples. Type: Expression profiling by array.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [Hi-C]
GEO Series GSE201353. Homo sapiens. 40 samples. Type: Other.
3D structures of individual mammalian genomes reveal principles of nuclear organization
GEO Series GSE80280. Mus musculus. 42 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration
GEO Series GSE227445. Mus musculus. 35 samples. Type: Other.
Reprogramming of 3D genome structure underlying HSPC development in zebrafish [RNA-seq]
GEO Series GSE262188. Danio rerio. 3 samples. Type: Expression profiling by high throughput sequencing.
Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration [BLISS]
GEO Series GSE227438. Mus musculus. 6 samples. Type: Other.
TADs are 3D structural units of higher-order chromosome organization in Drosophila [ph]
GEO Series GSE99106. Drosophila melanogaster. 2 samples. Type: Other.
3D chromosome structure reveals unique signatures involved in mouse female germline stem cells and their development
GEO Series GSE137771. Mus musculus. 11 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.