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250 results for “3D analysis”
MERRA-2 instU_3d_ana_Np: 3d,diurnal,Instantaneous,Pressure-Level,Analysis,Analyzed Meteorological Fields 0.625 x 0.5 degree V5.12.4 (M2IUNPANA) at GES DISC
M2IUNPANA (or instU_3d_ana_Np) is an instantaneous 3-dimensional monthly diurnal means data collection in Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA-2). This collection consists of analyzed meteorological fields at 42 pressure levels, such as temperature, wind components, specific humidity, ozone mixing ratio, and geopotential height. It is the monthly mean of data fields every six hour starting from 00:00 UTC, e.g.: 00:00, 06:00, … , 18:00 UTC. The information on the pressure levels can be found in the section 4.2 of the MERRA-2 File Specification document. MERRA-2 is the latest version of global atmospheric reanalysis for the satellite era produced by NASA Global Modeling and Assimilation Office (GMAO) using the Goddard Earth Observing System Model (GEOS) version 5.12.4. The dataset covers the period of 1980-present with the latency of ~3 weeks after the end of a month. Data Reprocessing: Please check “Records of MERRA-2 Data Reprocessing and Service Changes” linked from the “Documentation” tab on this page. Note that a reprocessed data filename is different from the original file.MERRA-2 Mailing List: Sign up to receive information on reprocessing of data, changing of tools and services, as well as data announcements from GMAO. Contact the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov) to be added to the list.Questions: If you have a question, please read "MERRA-2 File Specification Document", “MERRA-2 Data Access – Quick Start Guide”, and FAQs linked from the ”Documentation” tab on this page. If that does not answer your question, you may post your question to the NASA Earthdata Forum (forum.earthdata.nasa.gov) or email the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov).
MERRA-2 inst6_3d_ana_Nv: 3d,6-Hourly,Instantaneous,Model-Level,Analysis,Analyzed Meteorological Fields 0.625 x 0.5 degree V5.12.4 (M2I6NVANA) at GES DISC
M2I6NVANA (or inst6_3d_ana_Nv) is an instantaneous 3-dimensional 6-hourly data collection in Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA-2). This collection consists of analized meteorological fields at 72 model layers, such as temperature, wind components,specific humidity, and layer pressure thickness. The data field is available every six hour starting from 00:00 UTC, e.g.: 00:00, 06:00, … , 18:00 UTC. Section 4.2 of the MERRA-2 File Specification document provides pressure values nominal for a 1000 hPa surface pressure and refers to the top edge of the layer. The lev=1 is for the top layer, and lev=72 is for the bottom (or surface) model layer. MERRA-2 is the latest version of global atmospheric reanalysis for the satellite era produced by NASA Global Modeling and Assimilation Office (GMAO) using the Goddard Earth Observing System Model (GEOS) version 5.12.4. The dataset covers the period of 1980-present with the latency of ~3 weeks after the end of a month. Data Reprocessing: Please check “Records of MERRA-2 Data Reprocessing and Service Changes” linked from the “Documentation” tab on this page. Note that a reprocessed data filename is different from the original file.MERRA-2 Mailing List: Sign up to receive information on reprocessing of data, changing of tools and services, as well as data announcements from GMAO. Contact the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov) to be added to the list.Questions: If you have a question, please read "MERRA-2 File Specification Document", “MERRA-2 Data Access – Quick Start Guide”, and FAQs linked from the ”Documentation” tab on this page. If that does not answer your question, you may post your question to the NASA Earthdata Forum (forum.earthdata.nasa.gov) or email the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov).
MERRA-2 inst3_3d_gas_Nv: 3d,3-Hourly,Instantaneous,Model-Level,Assimilation,Aerosol Mixing Ratio Analysis Increments 0.625 x 0.5 degree V5.12.4 (M2I3NVGAS) at GES DISC
M2I3NVGAS (or inst3_3d_gas_Nv) is an instantaneous 3-dimensional 3-hourly data collection in Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA-2). This collection consists of aerosol mixing ratio analysis increments at 72 model layers, such as mixing ratio analysis increments of black carbon, dust, organic carbon, sea salt, and sulfate. The data field is available every three hour starting from 00:00 UTC, e.g.: 00:00, 03:00, … , 21:00 UTC. Section 4.2 of the MERRA-2 File Specification document provides pressure values nominal for a 1000 hPa surface pressure and refers to the top edge of the layer. The lev=1 is for the top layer, and lev=72 is for the bottom (or surface) model layer. MERRA-2 is the latest version of global atmospheric reanalysis for the satellite era produced by NASA Global Modeling and Assimilation Office (GMAO) using the Goddard Earth Observing System Model (GEOS) version 5.12.4. The dataset covers the period of 1980-present with the latency of ~3 weeks after the end of a month. Data Reprocessing: Please check “Records of MERRA-2 Data Reprocessing and Service Changes” linked from the “Documentation” tab on this page. Note that a reprocessed data filename is different from the original file.MERRA-2 Mailing List: Sign up to receive information on reprocessing of data, changing of tools and services, as well as data announcements from GMAO. Contact the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov) to be added to the list.Questions: If you have a question, please read "MERRA-2 File Specification Document", “MERRA-2 Data Access – Quick Start Guide”, and FAQs linked from the ”Documentation” tab on this page. If that does not answer your question, you may post your question to the NASA Earthdata Forum (forum.earthdata.nasa.gov) or email the GES DISC Help Desk (gsfc-dl-help-disc@mail.nasa.gov).
Obtention of viable cell suspensions from breast cancer tumor biopsies for 3D chromatin conformation and single cell transcriptome analysis [scRNA-seq 2]
GEO Series GSE270362. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptional and functional analysis of human dopamine neurons in 3D fetal ventral midbrain organoid like cultures
GEO Series GSE192405. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Genome wide analysis of pancreatic cancer cell gene expresison exposed to stromal pancreatic stellate cells in 3D gel matrix
GEO Series GSE36775. Homo sapiens. 6 samples. Type: Expression profiling by array.
Bi-directional Impacts of Heterotypic Interactions in Engineered 3D Human Cardiac Microtissues Revealed by Single-Cell RNA-Sequencing and Functional Analysis
GEO Series GSE155226. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina [10x multiome]
GEO Series GSE277326. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CloneSeq: A Highly Sensitive Single-cell Analysis Platform for Comprehensive Characterization of Cells from 3D Culture
GEO Series GSE155888. Homo sapiens; Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [ChIP-Seq]
GEO Series GSE201352. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate
GEO Series GSE122977. Homo sapiens; Mus musculus. 24 samples. Type: Other.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [RNA-Seq]
GEO Series GSE213093. Oryza sativa Indica Group. 36 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis revealed the symbiosis niche of 3D scaffolds to accelerate bone defect healing
GEO Series GSE190179. Rattus norvegicus. 12 samples. Type: Expression profiling by high throughput sequencing.
Integrative analysis of 3D nucleome and chromatin accessibility reveals a chromatin barrier established for T-lineage commitment during early T cell development
GEO Series GSE79875. Mus musculus. 88 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice
GEO Series GSE213227. Oryza sativa Indica Group. 89 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina [snm3c-seq]
GEO Series GSE277361. Homo sapiens. 144 samples. Type: Other.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues
GEO Series GSE305889. Homo sapiens; Mus musculus. 177 samples. Type: Other; Expression profiling by high throughput sequencing.
Transcriptome Analysis of Dihydrotestosterone-treated 2D- and 3D-cultured Dermal Papilla Cells
GEO Series GSE178374. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Real-time Quantitative PCR analysis of the expression of TGFB-pathway target genes on 3D-cultured chemoresistant colon carcinoma cells
GEO Series GSE77927. Homo sapiens. 4 samples. Type: Expression profiling by RT-PCR.
Transcriptomic analysis of cardiomyocyte differentiation from human induced pluripotent stem cells (hiPSCs) in 2D and 3D culture
GEO Series GSE116574. Homo sapiens. 62 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.