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187 results for “Barcode region”
FIGURE 6 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 6. Structure details of Scopula males. A–D—polymorphism of sternite A8 in some species; E–J—distal part of hindleg (tibia and tarsus). A, B—S. beckeraria; C, D—S. immutata; E—S. cajanderi; F—S. rubiginata; G—S. floslactata; H—S. subpunctaria; I—S. virgulata; J—S. corrivalaria.
FIGURE 46 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 46. Male genitalia of Siberian Sterrhinae. A–C—Scopula beckeraria; D–F—S. incanata; G–I—S. immutata; J–L—S. frigidaria; M–P—S. ternata. A, D, G, K, O—genital segment; B, E, H, J, M, P—sternite A8; C, F, I, L, N—phallos. Scale bar—1 mm.
FIGURE 32 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 32. Genitalia of Siberian Archiearinae. A, B, H—Archiearis parthenias; C, D, I—A. notha; E, F, G—Leucobrephos middendorfii. A, C, E—phallos; B, D, F—genital segment; G–I—bursa copulatrix. Scale bar—1 mm.
FIGURE 23 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 23. Adults of Siberian Sterrhinae. A—Holarctias rufinularia; B—Scopula agutsaensis; C—S. immorata; D—S. corrivalaria.
FIGURE 5 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 5. Morphological structures of male abdomen. A—Holarctias rufinaria; B—Scopula ternata; C—S. nigropunctata; D—S. incanata; E—Chlorissa obliterata. A, B, C—genital segment; D—sternite A8; E—basal sternites of abdomen.
FIGURE 18 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 18. Adults of Siberian Geometrinae. A—Hemithea aestivaria; B—Dyschloropsis impararia; C—Chlorissa viridata; D—C. obliterata.
FIGURE 35 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 35. Male genitalia of Siberian Geometrinae. A—Thalera chlorosaria; B, C—Dyschloropsis impararia; D, E, H, I—Chlorissa viridata; F, G, J—C. obliterata. A, B, D, F—genital segment; C, E, G—phallos; H–J—sternite A8. Scale bar—1 mm.
FIGURE 20 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 20. Adults of Siberian Sterrhinae. A—Idaea falckii; B—I. aureolaria; C—I. muricata; D—I. sylvestraria.
FIGURE 4. Wing venation. A in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 4. Wing venation. A—Jodis putata; B—Geometra papilionaria; C—Hemithea aestivaria; D—Chlorissa viridata; E—Holarctias rufinaria; F—Rhodostrophia vibicaria; G—Scopula ornata; H—Timandra rectistrigaria; I—Cyclophora albipunctata. A–D—hindwings; E, F—forewings; G–I—right pair of wings. R veins marked in red, M veins marked in blue, Cu veins marked in green, areole marked in teal.
FIGURE 3 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 3. Morphological structures of head. A—Archiearis notha; B—A. parthenias; C, E—Cleta jacutica; D, F—Holarctias rufinaria; G—Scopula ornata. A, B, D—antennae of males; C, F—head, frontal view; E—lateral view; G—dorsal view; f. w.—frons width; d. e.—diameter of eye.
FIGURE 25 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 25. Adults of Siberian Sterrhinae. A—Scopula nigropunctata; B—S. virgulata; C—S. ornata; D—S. decorata.
FIGURE 39 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 39. Male genitalia of Siberian Sterrhinae. A–C—Rhodostrophia jacularia; D–F—R. vibicaria; G–L—Cleta jacutica; M, N—Idaea dimidiata. A, G–K—genital segment; B, F, H, J, L, M—phallos; C, D—sternite A8; E, N—genital segment, valvae shifted. Scale bar—1 mm.
FIGURE 43 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 43. Male genitalia of Siberian Sterrhinae. A–C—Scopula corrivalaria; D–F—S. virginalis; G–J—S. dignata; K–M— S. nemoraria. A, E, G, K—genital segment; B, D, H, M—sternite A8; C, F, I, L—phallos; J—ditto, vesica everted. Scale bar—1 mm.
FIGURE 28 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 28. Adults of Siberian Sterrhinae. A—Scopula subpunctaria; B—S. prouti; C—S. flaccidaria; D—S. floslactata.
FIGURE 42 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 42. Male genitalia of Siberian Sterrhinae. A–C—Idaea descitaria; D–F—Holarctias rufinaria; G–I—H. rufinularia; J–L—Scopula agutsaensis; M–O—S. immorata. A, E, I, L, N—genital segment, ventral view; B—ditto, valvae shifted; C, D, H, K, O—phallos; G, F, J, M—sternite A8. Scale bar—1 mm.
FIGURE 38 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 38. Female genitalia of Siberian Geometrinae. A—Jodis lactearia; B—J. putata; C—Thalera fimbrialis; D—T. chlorosaria; E—Dyschloropsis impararia; F—Chlorissa viridata; G—C. obliterata. Scale bar—1 mm.
FIGURE 1 in Geometridae (Lepidoptera) of the Baikal region: identification keys and annotated catalogue with notes to DNA barcoding. Part 2. Archiearinae, Geometrinae, Sterrhinae
FIGURE 1. Species saturation curves of Geometridae of the Baikal region. Orange curve—Sterrhinae, green curve— Geometrinae, blue curve—Archiearinae. The numbers of species are plotted on the y-axis.
Data from: Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region
Open the record for dataset details and reuse information.
Supplementary material 1 from: Duarte S, Vieira PE, Costa FO (2020) Assessment of species gaps in DNA barcode libraries of non-indigenous species (NIS) occurring in European coastal regions. Metabarcoding and Metagenomics 4: e55162. https://doi.org/10.3897/mbmg.4.55162
Supplementary figures and tables used to analyse the data
Data from: Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity
The internal transcribed spacer (ITS) of nuclear ribosomal DNA is one of the most commonly used DNA markers in plant phylogenetic and DNA barcoding analyses, and it has been recommended as a core plant DNA barcode. Despite this popularity, the universality and specificity of PCR primers for the ITS region are not satisfactory, resulting in amplification and sequencing difficulties. By thoroughly surveying and analysing the 18S, 5.8S and 26S sequences of Plantae and Fungi from GenBank, we designed new universal and plant-specific PCR primers for amplifying the whole ITS region and a part of it (ITS1 or ITS2) of plants. In silico analyses of the new and the existing ITS primers based on these highly representative data sets indicated that (i) the newly designed universal primers are suitable for over 95% of plants in most groups; and (ii) the plant-specific primers are suitable for over 85% of plants in most groups without amplification of fungi. A total of 335 samples from 219 angiosperm families, 11 gymnosperm families, 24 fern and lycophyte families, 16 moss families and 17 fungus families were used to test the performances of these primers. In vitro PCR produced similar results to those from the in silico analyses. Our new primer pairs gave PCR improvements up to 30% compared with common-used ones. The new universal ITS primers will find wide application in both plant and fungal biology, and the new plant-specific ITS primers will, by eliminating PCR amplification of nonplant templates, significantly improve the quality of ITS sequence information collections in plant molecular systematics and DNA barcoding.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.