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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [RNA-seq gastruloid]
GEO Series GSE272387. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
DNA hypohydroxymethylation in pediatric brain tumors is associated with CTCF binding sites and reduced survival
GEO Series GSE152561. Homo sapiens. 80 samples. Type: Methylation profiling by genome tiling array.
Poly(ADP-ribosyl)ation dependent changes in CTCF-chromatin binding and gene expression in breast cells
GEO Series GSE102237. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF ChIP-seq in NSCs
GEO Series GSE228672. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites [RNA-seq]
GEO Series GSE224729. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning [dataset 1]
GEO Series GSE112781. Mus musculus. 7 samples. Type: Other.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Tri-C]
GEO Series GSE263640. Homo sapiens. 21 samples. Type: Other.
Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [RNA-Seq]
GEO Series GSE39522. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
CTCF-dependent chromatin architecture and SUZ12/PRC2 complex recruitment are required for peripheral myelination and repair
GEO Series GSE138117. Mus musculus; Rattus norvegicus. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF functions as a chromatin insulator in the HoxA cluster during neurogenesis [4C-Seq]
GEO Series GSE60227. Mus musculus. 9 samples. Type: Other.
Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [RNA]
GEO Series GSE239767. human gammaherpesvirus 4. 18 samples. Type: Expression profiling by high throughput sequencing.
ChIP-seq for CTCF, H3K4me3 and H3K27ac following CTCF RNAi in LNCaP cells and IMR90 cells
GEO Series GSE125639. Homo sapiens. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-mediated 3D chromatin predetermines the gene expression program in the male germline (Hi-C)
GEO Series GSE244676. Mus musculus. 14 samples. Type: Other.
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [HiC_mESC]
GEO Series GSE104814. Mus musculus. 4 samples. Type: Other.
Binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation (RNA-seq)
GEO Series GSE270619. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
TRF2 cooperates with CTCF for controlling the oncomiR-193b-3p in colorectal cancer.
GEO Series GSE186022. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by array.
Ectopic recruitment of the CTCF N-terminal domain with two proximal zinc-finger domains as a tool for 3D genome engineering
GEO Series GSE300308. Homo sapiens. 51 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
A CTCF binding element regulates RA-induced early ESCs differentiation through orchestrating long-range chromatin interactions between its adjacent enhancers and HoxA
GEO Series GSE154495. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF
GEO Series GSE27215. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing.
Integrative Single-Cell Analysis of Gene Expression and Chromatin Accessibility Reveals CTCF as a Key Regulator of Stem Cell Differentiation and Lung Morphogenesis [scRNA-seq]
GEO Series GSE286985. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.