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zenodo40/100

Cyclostrophic corrections of AVISO/DUACS surface velocities and its application to mesoscale eddies in the Mediterranean Sea

<p>We apply an optimised iterative method to retrieve with best accuracy the cyclogeostrophic corrections on fifteen years (2000-2015) of surface geostrophic velocity fields provided by AVISO/DUACS for the Mediterranean Sea. The initial gridded altimeter products were produced by SSALTO/DUACS and distributed by the Copernicus Marine Environment Monitoring Service (marine.copernicus.eu).&nbsp;</p> <p>Each netCFD file corresponds to the two cyclogeostrophic velocity components zonal u and meridional&nbsp; v.&nbsp;</p> <p>(ssu_adt_DYNED_MED_cyclo_2000_2015.nc &amp;&nbsp;ssv_adt_DYNED_MED_cyclo_2000_2015.nc)</p> <p>&nbsp;</p>

opencc-by-4.0Sep 2019View details →
zenodo40/100

Bias-corrected simluated wind power generation time series for Brazil

<p>Simulated and bias corrected wind power generation time series data sets for Brazil, its North-East and South, seven states and seven wind parks.</p> <p>The data sources, generation and validation of the datasets are described in the article &quot;Assessing the Global Wind Atlas and local measurements for bias correction of wind power generation simulated from MERRA-2 in Brazil&quot;, preprint available on arXiv: arxiv.org/abs/1904.13083, final version DOI:&nbsp;<a href="https://doi.org/10.1016/j.energy.2019.116212">10.1016/j.energy.2019.116212</a></p> <p>Code for generating the datasets is available at github.com/KatharinaGruber/BrazilWindpower_biascorr</p> <p>&nbsp;</p> <p>The files &quot;comp_*&quot; contain comparisons of simulated and observed wind power generation time series with daily resolution for all regions.</p> <p>&quot;comp_noc.RData&quot; is for comparison of interpolation methods and contains time series generated with Nearest Neighbour interpolation (NN), Bilinear Interpolation (BLI) and Inverse Distance Weighting (IDW).</p> <p>&quot;comp_wmsa.RData&quot; is for comparison of wind speed mean approximation methods and contains time series generated with Nearest Neighbour interpolation (NN - no correction applied), mean approximation with measured data (IN) and mean approximation with the Global Wind Atlas (GWA).</p> <p>&quot;comp_wsc.RData&quot; is for comparison of spatiotemporal wind speed correction methods and contains time series generated with mean approximation with the Global Wind Atlas (wmsa) and combined mean approximation with the Global Wind Atlas and hourly and monthly mean approximation with measured data (wschm).</p> <p>&nbsp;</p> <p>The files &quot;statpowlist_*&quot; contain hourly simulated wind power generation time series for three interpolation methods (NN, BLI, IDW), two mean approximation methods (wsmaIN - measured data (INMET), wsmaWA - Global Wind Atlas) as well as for spatiotemporal (hourly and monthly) wind speed bias correction (wschm) for each wind park available in The Wind Power dataset.</p>

opencc-by-4.0Sep 2019View details →
zenodo40/100

Dataset of ICDAR 2019 Competition on Post-OCR Text Correction

<p><strong>Corpus for the ICDAR2019 Competition on Post-OCR Text Correction (October 2019)</strong><br> Christophe Rigaud, Antoine Doucet, Mickael Coustaty, Jean-Philippe Moreux<br> <a href="http://l3i.univ-larochelle.fr/ICDAR2019PostOCR">http://l3i.univ-larochelle.fr/ICDAR2019PostOCR</a><br> -------------------------------------------------------------------------------</p> <p>These are the supplementary materials for the ICDAR 2019 paper&nbsp;<em><a href="https://zenodo.org/record/3459116">ICDAR 2019 Competition on Post-OCR Text Correction</a></em></p> <p>Please use the following citation:</p> <pre><code>@inproceedings{rigaud2019pocr,</code> <code> </code><code>title=&quot;ICDAR 2019 Competition on Post-OCR Text Correction&quot;,</code> <code> </code><code>author={Rigaud, Christophe and Doucet, Antoine and Coustaty, Mickael and Moreux, Jean-Philippe},</code> <code> </code><code>year={2019},</code> <code> </code><code>booktitle={Proceedings of the 15th International Conference on Document Analysis and Recognition (2019)}</code> <code> </code><code>}</code></pre> <p>&nbsp;</p> <p><strong>Description</strong><br> The corpus accounts for 22M OCRed characters along with the corresponding Gold Standard (GS). The documents come from different digital collections available, among others, at the National Library of France (BnF) and the British Library (BL). The corresponding GS comes both from BnF&#39;s internal projects and external initiatives such as Europeana Newspapers, IMPACT, Project Gutenberg, Perseus and Wikisource.</p> <p><strong>Repartition of the dataset</strong><br> - <em>ICDAR2019_Post_OCR_correction_training_18M.zip</em>: 80% of the full dataset, provided to train participants&#39; methods.<br> - <em>ICDAR2019_Post_OCR_correction_evaluation_4M</em>: 20% of the full dataset used for the evaluation (with Gold Standard made publicly after the competition).<br> - <em>ICDAR2019_Post_OCR_correction_full_22M</em>: full dataset made publicly available after the competition.</p> <p><strong>Special case for Finnish language</strong><br> Material from the National Library of Finland (<em>Finnish dataset FI &gt; FI1</em>) are not allowed to be re-shared on other website. Please follow these guidelines to get and format the data from the original website.</p> <p>1. Go to <a href="https://digi.kansalliskirjasto.fi/opendata/submit?set_language=en">https://digi.kansalliskirjasto.fi/opendata/submit?set_language=en</a>;<br> 2. Download <em>OCR Ground Truth Pages (Finnish Fraktur) [v1](4.8GB)</em> from <em>Digitalia (2015-17)</em> package;<br> 3. Convert the Excel file &quot;<em>~/metadata/nlf_ocr_gt_tescomb5_2017.xlsx</em>&quot; as Comma Separated Format (.csv) by using <em>save as</em> function in a spreadsheet software (e.g. Excel, Calc) and copy it into &quot;<em>FI/FI1/HOWTO_get_data/input/</em>&quot;;<br> 4. Go to &quot;<em>FI/FI1/HOWTO_get_data/</em>&quot; and run &quot;<em>script_1.py</em>&quot; to generate the <em>full</em> &quot;<em>FI1</em>&quot; dataset in &quot;<em>output/full/</em>&quot;;<br> 4. Run &quot;<em>script_2.py</em>&quot; to split the &quot;<em>output/full/</em>&quot; dataset into &quot;<em>output/training/</em>&quot; and &quot;<em>output/evaluation/</em>&quot; sub sets.<br> At the end of the process, you should have a &quot;<em>training</em>&quot;, &quot;<em>evaluation</em>&quot; and &quot;<em>full</em>&quot; folder with 1579528, 380817 and 1960345 characters respectively.</p> <p><br> <strong>Licenses: free to use for non-commercial uses, according to sources in details</strong><br> - BG1: IMPACT - National Library of Bulgaria: CC BY NC ND<br> - CZ1: IMPACT - National Library of the Czech Republic: CC BY NC SA<br> - DE1: Front pages of Swiss newspaper NZZ: Creative Commons Attribution 4.0 International (<a href="https://zenodo.org/record/3333627">https://zenodo.org/record/3333627</a>)<br> - DE2: IMPACT - German National Library: CC BY NC ND<br> - DE3: GT4Hist-dta19 dataset: CC-BY-SA 4.0 (<a href="https://zenodo.org/record/1344132">https://zenodo.org/record/1344132</a>)<br> - DE4: GT4Hist - EarlyModernLatin: CC-BY-SA 4.0 (<a href="https://zenodo.org/record/1344132">https://zenodo.org/record/1344132</a>)<br> - DE5: GT4Hist - Kallimachos: CC-BY-SA 4.0 (<a href="https://zenodo.org/record/1344132">https://zenodo.org/record/1344132</a>)<br> - DE6: GT4Hist - RefCorpus-ENHG-Incunabula: CC-BY-SA 4.0 (<a href="https://zenodo.org/record/1344132">https://zenodo.org/record/1344132</a>)<br> - DE7: GT4Hist - RIDGES-Fraktur: CC-BY-SA 4.0 (<a href="https://zenodo.org/record/1344132">https://zenodo.org/record/1344132</a>)<br> - EN1: IMPACT - British Library: CC BY NC SA 3.0<br> - ES1: IMPACT - National Library of Spain: CC BY NC SA<br> - FI1: National Library of Finland: no re-sharing allowed, follow the above section to get the data. (<a href="https://digi.kansalliskirjasto.fi/opendata">https://digi.kansalliskirjasto.fi/opendata</a>)<br> - FR1: HIMANIS Project: CC0 (<a href="https://www.himanis.org/">https://www.himanis.org</a>)<br> - FR2: IMPACT - National Library of France: CC BY NC SA 3.0<br> - FR3: RECEIPT dataset: CC0 (<a href="http://findit.univ-lr.fr/">http://findit.univ-lr.fr</a>)<br> - NL1: IMPACT - National library of the Netherlands: CC BY<br> - PL1: IMPACT - National Library of Poland: CC BY<br> - SL1: IMPACT - Slovak National Library: CC BY NC</p> <p>Text post-processing such as cleaning and alignment have been applied on the resources mentioned above, so that the Gold Standard and the OCRs provided are not necessarily identical to the originals.</p> <p><br> <strong>Structure</strong><br> - **Content** [<em>./lang_type/sub_folder/#.txt</em>]<br> &nbsp;&nbsp; &nbsp;- &quot;<em>[OCR_toInput] </em>&quot; =&gt; Raw OCRed text to be de-noised.<br> &nbsp;&nbsp; &nbsp;- &quot;<em>[OCR_aligned] </em>&quot; =&gt; Aligned OCRed text.<br> &nbsp;&nbsp; &nbsp;- &quot;<em>[ GS_aligned] </em>&quot; =&gt; Aligned Gold Standard text.</p> <p>The aligned OCRed/GS texts are provided for training and test purposes. The alignment was made at the character level using &quot;<em>@</em>&quot; symbols. &quot;<em>#</em>&quot; symbols correspond to the absence of GS either related to alignment uncertainties or related to unreadable characters in the source document. For a better view of the alignment, make sure to disable the &quot;word wrap&quot; option in your text editor.</p> <p>The Error Rate and the quality of the alignment vary according to the nature and the state of degradation of the source documents. Periodicals (mostly historical newspapers) for example, due to their complex layout and their original fonts have been reported to be especially challenging. In addition, it should be mentioned that the quality of Gold Standard also varies as the dataset aggregates resources from different projects that have their own annotation procedure, and obviously contains some errors.</p> <p><br> <strong>ICDAR2019 competition</strong><br> Information related to the tasks, formats and the evaluation metrics are details on :<br> <a href="https://sites.google.com/view/icdar2019-postcorrectionocr/evaluation">https://sites.google.com/view/icdar2019-postcorrectionocr/evaluation</a></p> <p><br> <strong>References</strong><br> &nbsp;- IMPACT, European Commission&#39;s 7th Framework Program, grant agreement 215064<br> &nbsp;- Uwe Springmann, Christian Reul, Stefanie Dipper, Johannes Baiter (2018). Ground Truth for training OCR engines on historical documents in German Fraktur and Early Modern Latin.<br> &nbsp;- <a href="https://digi.nationallibrary.fi/">https://digi.nationallibrary.fi</a> , Wiipuri, 31.12.1904, Digital Collections of National Library of Finland<br> - EU Horizon 2020 research and innovation programme grant agreement No 770299</p> <p><br> <strong>Contact</strong><br> - christophe.rigaud(at)univ-lr.fr<br> - antoine.doucet(at)univ-lr.fr<br> - mickael.coustaty(at)univ-lr.fr<br> - jean-philippe.moreux(at)bnf.fr</p> <p>L3i - University of la Rochelle, <a href="http://l3i.univ-larochelle.fr/">http://l3i.univ-larochelle.fr</a><br> BnF - French National Library, <a href="http://www.bnf.fr/">http://www.bnf.fr</a></p>

opencc-by-4.0Oct 2019View details →
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Text-fig. 10. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, NM S 4766, x 26. Lateral plates on undersurface of arm segment in Hunsrück Slate articulated specimen. Short thin groove spines on ventral edge of lateral arm plates protect undersurface of vertebra and partially cover ambulacral groove. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 10. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, NM S 4766, x 26. Lateral plates on undersurface of arm segment in Hunsrück Slate articulated specimen. Short thin groove spines on ventral edge of lateral arm plates protect undersurface of vertebra and partially cover ambulacral groove.

opencc-by-4.0Aug 2007View details →
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Text-fig. 11. Eospondylus cf. primigenius (STÜRTZ) "Prastav" quarry at Praha-Holyně, Třebotov Limestone, Lower Devonian, Dalejan, NM L 36905, x 65. Overlay of proximal and distal articulations. Upper photo is proximal surface with distal bird-like articulation knobs superposed in ink. Lower photo is distal surface with proximal articulation knobs superposed in ink. The architecture of articulation surfaces is both zygospondylous and auluroid. This architecture occurs also in vertebrae of Furcaster and indicates that families Eospondylidae and Furcasteridae are closely related. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 11. Eospondylus cf. primigenius (STÜRTZ) "Prastav" quarry at Praha-Holyně, Třebotov Limestone, Lower Devonian, Dalejan, NM L 36905, x 65. Overlay of proximal and distal articulations. Upper photo is proximal surface with distal bird-like articulation knobs superposed in ink. Lower photo is distal surface with proximal articulation knobs superposed in ink. The architecture of articulation surfaces is both zygospondylous and auluroid. This architecture occurs also in vertebrae of Furcaster and indicates that families Eospondylidae and Furcasteridae are closely related.

opencc-by-4.0Aug 2007View details →
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Text-fig. 7B. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, BMNH E3358, x 4. Hunsrück Slate articulated specimen. Underside of arm showing two contrasting appearances of lateral arm plates in a single arm. The arm is rolled slightly. Of the left lateral arm plates the lateral surface is extensively exposed. The spine ridge faces distally (posteriorly). Of the right lateral arm plates only the ventral edge that borders the ambulacral groove is exposed. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 7B. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, BMNH E3358, x 4. Hunsrück Slate articulated specimen. Underside of arm showing two contrasting appearances of lateral arm plates in a single arm. The arm is rolled slightly. Of the left lateral arm plates the lateral surface is extensively exposed. The spine ridge faces distally (posteriorly). Of the right lateral arm plates only the ventral edge that borders the ambulacral groove is exposed.

opencc-by-4.0Aug 2007View details →
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Text-fig. 8. Eospondylus cf. primigenius (STÜRTZ) "Červený lom" quarry near Praha-Klukovice, Loděnice Limestone, Lower Devonian, Pragian, NM L 36910, x 25. Left lateral plate, outer view. The surface leading to the vertical ridge flairs outward. The height profile leaves uncovered part of the side of the arm vertebra. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 8. Eospondylus cf. primigenius (STÜRTZ) "Červený lom" quarry near Praha-Klukovice, Loděnice Limestone, Lower Devonian, Pragian, NM L 36910, x 25. Left lateral plate, outer view. The surface leading to the vertical ridge flairs outward. The height profile leaves uncovered part of the side of the arm vertebra.

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Text-fig. 6. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, NM S 4766, x 12.5. Undersurface of arm segments in Hunsrück Slate articulated specimen. A few lateral plates are displaced and expose details of vertebrae. The canal for radial water vessel is in center of zygosphene knob and zygotreme pit, like spout and funnel. At distal outer edges of vertebrae is cupola for tube feet. There are no under arm plates. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 6. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, NM S 4766, x 12.5. Undersurface of arm segments in Hunsrück Slate articulated specimen. A few lateral plates are displaced and expose details of vertebrae. The canal for radial water vessel is in center of zygosphene knob and zygotreme pit, like spout and funnel. At distal outer edges of vertebrae is cupola for tube feet. There are no under arm plates.

opencc-by-4.0Aug 2007View details →
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Text-fig. 2. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate,, NM S 4764, x 3. Specimen with ventral arm coiling. The specimen is on its dorsum in slate with all five rays curled ventrally inward toward mouth area on underside of disk. Barely visible are tips of two jaws; slightly exposed are proximal parts of rays in oral view extending outward from disk. The location of abrupt ventral bending of rays is indicated by emergence from slate of five rays in aboral view that point inward toward buried disk. Based on ventral bending of rays and intimate association with crinoids Eospondylus has been interpreted as stratigraphic first occurrence of Order Euryalida, which contains epizoic gorgonocephalid and euryalid basket-stars of modern oceans. This status is rejected using new evidence from isolated vertebrae. [Photo by Alexander Glass]. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)

Text-fig. 2. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate,, NM S 4764, x 3. Specimen with ventral arm coiling. The specimen is on its dorsum in slate with all five rays curled ventrally inward toward mouth area on underside of disk. Barely visible are tips of two jaws; slightly exposed are proximal parts of rays in oral view extending outward from disk. The location of abrupt ventral bending of rays is indicated by emergence from slate of five rays in aboral view that point inward toward buried disk. Based on ventral bending of rays and intimate association with crinoids Eospondylus has been interpreted as stratigraphic first occurrence of Order Euryalida, which contains epizoic gorgonocephalid and euryalid basket-stars of modern oceans. This status is rejected using new evidence from isolated vertebrae. [Photo by Alexander Glass].

opencc-by-4.0Aug 2007View details →
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Figures 13–16 in Re-characterization of two Lithosiini species recently described from the island of Taiwan, with establishing of a new combination and the corrected checklist of the genus Aberrasine Volynkin & Huang, 2019 (Lepidoptera: Erebidae: Arctiinae: Lithosiini)

Figures 13–16. Aberrasine spp.: female genitalia. Depositories of the specimens: 13 and 15 in MWM/ZSM; 14 and 16 in NHMUK (©).

opencc-by-4.0Dec 2020View details →
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Figures 9–12 in Re-characterization of two Lithosiini species recently described from the island of Taiwan, with establishing of a new combination and the corrected checklist of the genus Aberrasine Volynkin & Huang, 2019 (Lepidoptera: Erebidae: Arctiinae: Lithosiini)

Figures 9–12. Aberrasine spp.: male genitalia. Depositories of the specimens: 9 and 11 in MWM/ZSM; 10 and 12 in NHMUK (©).

opencc-by-4.0Dec 2020View details →
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Figures 1–8 in Re-characterization of two Lithosiini species recently described from the island of Taiwan, with establishing of a new combination and the corrected checklist of the genus Aberrasine Volynkin & Huang, 2019 (Lepidoptera: Erebidae: Arctiinae: Lithosiini)

Figures 1–8. Aberrasine spp.: adults. Depositories of the specimens: 1, 2, 5 and 6 in MWM/ZSM; 3, 4, 7 and 8 in NHMUK (©).

opencc-by-4.0Dec 2020View details →
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Figures 7–10 in On the correct identification of Miltochrista jeremyhollowayi (Bucsek, 2014) and Miltochrista malayproducta (Bucsek, 2012) (Lepidoptera: Erebidae: Arctiinae: Lithosiini)

Figures 7–10. Miltochrista spp.: male genitalia. Depositories of the specimens: 7 and 9 in MWM/ZSM; 8 and 10 in NHMUK (©).

opencc-by-4.0Dec 2020View details →
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Figures 1–6 in On the correct identification of Miltochrista jeremyhollowayi (Bucsek, 2014) and Miltochrista malayproducta (Bucsek, 2012) (Lepidoptera: Erebidae: Arctiinae: Lithosiini)

Figures 1–6. Miltochrista spp.: adults. Depositories of the specimens: 1, 2, 5 and 6 in MWM/ZSM; 3 and 4 in NHMUK (©).

opencc-by-4.0Dec 2020View details →
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FIGURE 5 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 5. The performance of different implementations of the residual diversity estimate when a specific bias is forced to be the dominant influence. (5.1) Mean Spearman's rho values of four implementations of the RDE using the Smith and McGowan method. PFORM and PTAPH are set at 0.9 to minimise their influence, PLOC is variable. PMIST set at 0.1. (5.2) Mean Spearman's rho values of four implementations of the RDE using the Smith and McGowan method. LOC and PTAPH are set at 0.9 to minimise their influence, PFORM is variable. PMIST set at 0.1. The dashed red line indicates the critical value at p=0.05. Abbreviations as in Table 1.

opencc-by-4.0Nov 2015View details →
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FIGURE 7 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 7. Sample simulation comparing the results of the taxic, phylogenetic and residual diversity estimates to the true diversity. PFROM, PLOC and PTAPH set at 0.25. PMIST set at 0.1. Black box highlights instance where the Signor Lipps effect has been exaggerated by the PDE; the TDE and RDE both identify the rapid diversity decrease present in the true diversity. Abbreviations as in Table 1.

opencc-by-4.0Nov 2015View details →
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FIGURE 6 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 6. The performance of the phylogenetic diversity estimate when errors are introduced to the phylogeny. Mean Spearman's rho values of the PDE, TDE and the best performing implementation of the RDE. PLOC, PFORM and PTAPH set at 0.25. PMIST variable. The dashed red line indicates the critical value at p=0.05. Abbreviations as in Table 1.

opencc-by-4.0Nov 2015View details →
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FIGURE 4 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 4. The performance of different implementations of the residual diversity estimate examining faunas with varying degrees of homogeneity. PFORM, PLOC and PTAPH are set at 0.25. The rate of dispersal is increased relative to the rate of local extinction to increase the homogeneity of the faunas. The dashed red line indicates the critical value at p=0.05. Abbreviations as in Table 1.

opencc-by-4.0Nov 2015View details →
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FIGURE 1 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 1. An illustration of the taphonomic filter in the simulation, shown applied to a single taxon in a single time bin. The taxon is originally present in every locality in each region it occupies, but the taphonomic filter removes it from randomly selected localities

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FIGURE 3 in A simulation-based examination of residual diversity estimates as a method of correcting for sampling bias

FIGURE 3. The performance of different implementations of the residual diversity estimate (RDE) under different sampling regimes. (3.1) Mean Spearman's rho values of four implementations of the RDE using Formations as a proxy, with values of PFORM, PLOC and PTAPH variable but equal. (3.2) Mean Spearman's rho values of four implementations of the RDE using Localities as a proxy. (3.3) Mean Spearman's rho values of four implementations of the RDE, all using the Smith and McGowan method. (3.4) Mean Spearman's rho values of the taxic and phylogenetic diversity estimate compared to those of the optimum implementation of the RDE. The dashed red line indicates the critical value at p=0.05. Abbreviations as in Table 1.

opencc-by-4.0Nov 2015View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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Your academic CV and NIH biosketch

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