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158
datasets available to search
ShareScore release 0.9.0
Dataset results
158 results for “Crypt”
Expression data from control, Rb KO and Rb/Myc DKO tissues (villi and crypts)
GEO Series GSE56007. Mus musculus. 30 samples. Type: Expression profiling by array.
Expression profiling in control and YY1 knockout mouse intestinal crypt epithelia
GEO Series GSE53496. Mus musculus. 4 samples. Type: Expression profiling by array.
Gene expression signature of fast and slow cycling intestinal crypt base columnar cell populations
GEO Series GSE52813. Mus musculus. 10 samples. Type: Expression profiling by array.
Single cell gene expression profile of irradiated small intestinal crypt cells of WT and CREPT KO mice
GEO Series GSE228700. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Expression data from induced pluripotent stem cell-derived crypt-villus structural small intestine
GEO Series GSE291253. Homo sapiens. 4 samples. Type: Expression profiling by array.
MicroRNA miR-16 is anti-proliferative in enterocytes and exhibits diurnal rhythmicity in intestinal crypts
GEO Series GSE20603. Rattus norvegicus. 21 samples. Type: Non-coding RNA profiling by array.
Gene expression profiling of Eed knockout and Ezh2 knockout small intestinal crypts
GEO Series GSE81578. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Transcriptomic profiling of small intestinal crypts upon MEX3A deletion
GEO Series GSE141191. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Expression data of small intestine crypts and villi from mice with nutritional and genetic risk factors for intestinal tumors
GEO Series GSE29538. Mus musculus. 47 samples. Type: Expression profiling by array.
Gene regulatory networks along the small intestinal crypt-villus axis
GEO Series GSE3216. Mus musculus. 14 samples. Type: Expression profiling by array.
Crypt in Rękawczyn (Poland)
Three stages of the excavations late medieval crypt Source: Objaverse 1.0 / Sketchfab
Figure 5. A, topological similarities between gene trees. A in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 5. A, topological similarities between gene trees. A non-metric multidimensional ordination plot, based on the Robinson–Foulds (RF) distance between each pair of genes, is used to visualize the topological similarity among the 208 single gene trees. Pairs of gene trees with similar topologies are closer together in the two-dimensional space. Colours represent RF distances between individual gene trees and the extended majority-rule consensus (MRE) phylogeny. B, identifying optimal subsets of genes with the least topological incongruence. The graph shows the Tree Certainty (TC) values from Salichos & Rokas (2013). Information theory approach using the MRE phylogeny as a reference tree, where higher values represent greater congruency between the gene trees and the MRE tree. The x-axis represents the number of genes sampled, following an iterative procedure beginning with the first two genes in the respective ranking and progressively adding genes according to their order in the list. The five ranking criteria all outperformed random gene orders.
Figure 1 in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 1. Bioinformatic pipeline used for the identification and phylogenetic analysis of 210 single copy genes from Illumina short-read sequence data. The box with the dashed line indicates a pre-processing step that was necessary prior to assembly when sequence quality was low.
Expression data from control, E2f TKO, Myc KO and E2f/Myc QKO crypts
GEO Series GSE56006. Mus musculus. 18 samples. Type: Expression profiling by array.
Subepithelial telocytes are an indispensable source of Wnt ligands supporting intestinal crypts
GEO Series GSE94072. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide DNA methylation analysis using gastric crypts with intestinal metaplasia and NOS2-inducible cell lines
GEO Series GSE220511. Homo sapiens. 26 samples. Type: Methylation profiling by genome tiling array.
Gene expression in intestinal epithelial crypt and villus cell populations
GEO Series GSE51398. Mus musculus. 10 samples. Type: Expression profiling by array.
Murine small intestinal crypt cell line IEC-6: control vs. TGF-beta stimulated
GEO Series GSE20982. Rattus norvegicus; Murid gammaherpesvirus 4; Betapolyomavirus hominis; Mus musculus; Murid betaherpesvirus 1; JC polyomavirus; Human immunodeficiency virus 1; Human gammaherpesvirus 8; Homo sapiens; Human alphaherpesvirus 1; Human betaherpesvirus 5; human gammaherpesvirus 4; Betapolyomavirus macacae. 3 samples. Type: Non-coding RNA profiling by array.
Small intestinal crypt cell subsets and gene expression in sleep-deprived mice
GEO Series GSE289089. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomics of single-cell and bulk sorted and micro-dissected mouse bone marrow, fetal liver and small intestine crypt cells
GEO Series GSE89379. Mus musculus. 45 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.