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Dataset results
223 results for “Danio rerio”
Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio)
GEO Series GSE60202. Pimephales promelas. 511 samples. Type: Expression profiling by array; Third-party reanalysis.
Underestimation of inadvertent morpholino RNA targets: evidence from the study of Danio rerio Ser/Arg-rich splicing factors using gene editing tools
GEO Series GSE98888. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
RNAseq of zebrafish (Danio rerio) developmentally exposed to the polychlorinated biphenyl 3,3'-dichlorobiphenyl (PCB-11)
GEO Series GSE118955. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
RNAseq analysis of the herbicide propyzamide on a pre-clinical model of IBD on Danio rerio model
GEO Series GSE194408. Danio rerio. 48 samples. Type: Expression profiling by high throughput sequencing.
Analysis of the long-lived responses induced by immunostimulants and their effects on a viral infection in zebrafish (Danio rerio)
GEO Series GSE113241. Danio rerio. 32 samples. Type: Expression profiling by array.
RNA_Seq analysis of localization along animal-vegetal axis of Danio rerio
GEO Series GSE166917. Danio rerio. 17 samples. Type: Expression profiling by high throughput sequencing.
Analyzing cold tolerance mechanism in transgenic zebrafish (Danio rerio)
GEO Series GSE58988. Danio rerio. 12 samples. Type: Expression profiling by array.
Developmental exposure to low-level saxitoxin affects neuronal gene expression in zebrafish (Danio rerio)
GEO Series GSE204989. Danio rerio. 18 samples. Type: Expression profiling by high throughput sequencing.
Effect of obesity on liver immune response to inflammatory stimuli in a diet-obesity model of zebrafish (Danio rerio)
GEO Series GSE56478. Danio rerio. 16 samples. Type: Expression profiling by array.
Discovery and validation of gene classifiers for endocrine disrupting chemicals in Zebrafish (Danio rerio)
GEO Series GSE38070. Danio rerio. 318 samples. Type: Expression profiling by array.
Transcriptomic and Metabolomic Studies Reveal That Toll-like Receptor 2 Has a Role in Glucose-Related Metabolism in Unchallenged Zebrafish Larvae (Danio rerio)
GEO Series GSE230673. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis reveals potential mechanisms of toxicity in a combined exposure to dibutyl phthalate and diisobutyl phthalate in zebrafish (Danio rerio) ovary
GEO Series GSE134345. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
WGBS and RNA-seq of Danio rerio in HSPC generation
GEO Series GSE189072. Danio rerio. 34 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Danio rerio: wilde-type control vs. tbx5 morpholino
GEO Series GSE33965. Danio rerio. 7 samples. Type: Expression profiling by array.
Dieldrin augments mTOR signaling and inhibits lysosomal acidification in the adult zebrafish heart (Danio rerio)
GEO Series GSE87294. Danio rerio. 15 samples. Type: Expression profiling by array.
Data from: Teratological and behavioral screening of the National Toxicology Program 91-compound library in zebrafish (Danio rerio)
To screen the tens of thousands of chemicals for which no toxicity data currently exists, it is necessary to move from in vivo rodent models to alternative models, such as zebrafish. Here, we used dechorionated Tropical 5D wildtype zebrafish embryos to screen a 91-compound library provided by the National Toxicology Program (NTP) for developmental toxicity. This library contained 86 unique chemicals that included negative controls, flame retardants, polycyclic aromatic hydrocarbons (PAHs), drugs, industrial chemicals and pesticides. Fish were exposed to five concentrations of each chemical or an equal amount of vehicle (0.5% DMSO) in embryo medium from 6 h post-fertilization (hpf) to 5 d post-fertilization (dpf). Fish were examined daily for mortality and teratogenic effects and photomotor behavior was assessed at 4 and 5 dpf. Of the five negative control compounds in the library, none caused mortality/teratogenesis, but two altered behavior. Chemicals provided in duplicate produced similar outcomes. Overall, 13 compounds caused mortality/teratology but not behavioral abnormalities, 24 only affected behavior, and 18 altered both endpoints, with behavior affected at concentrations that did not cause mortality/teratology (55/86 hits). Of the compounds that affected behavior, 52% caused behavioral abnormalities at either 4 or 5 dpf. Compounds within the same functional group caused different behavioral abnormalities, while similar behavioral patterns were caused by compounds from different groups. Our data suggest that behavior is a sensitive endpoint for developmental toxicity screening that integrates multiple modes of toxic action and is influenced by the age of the larval fish at the time of testing.
Silver Nanoparticles Encapped by Dihydromyricetin: Optimization of Green Synthesis, Characterization, Toxicity and Anti-MRSA-infection for Zebrafish (Danio Rerio).
Open the record for dataset details and reuse information.
Comparisons of toxicogenomic responses in zebrafish (Danio rerio) exposed to ZnO nanoparticles and ZnSO4: The impact of sublethal concentration (LC25) on global gene expression profiles
GEO Series GSE77148. Danio rerio. 8 samples. Type: Expression profiling by array.
Cortisol acting through the glucocorticoid receptor is not responsible for exercise-enhanced growth but does affect the white skeletal muscle transcriptome in zebrafish (Danio rerio)
GEO Series GSE120253. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
TGFβ signaling in retinal tissue repair [Danio Rerio]
GEO Series GSE132141. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.