Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
903
datasets available to search
ShareScore release 0.9.0
Dataset results
903 results for “Domestication”
Domestic and wild native herbivores combined are still overgrazing Patagonia rangelands: A response to Marino et al. (2019)
<p>1. Oliva et al. (2019) based upon primary productivity estimates concluded that, after long periods of overgrazing, Patagonia´s domestic stocks adjusted to regional-scale herbivore carrying capacity at the end of last century. Guanaco populations, a native camelid, increased thereafter driving combined grazing pressures once again over carrying capacity in some areas.</p> <p>2. Marino, Rodriguez and Schroeder (2019) argued that domestic grazing is not really at equilibrium because domestic stocks are concentrated in areas that remain overgrazed. They support the idea that guanacos auto-regulate their density by resource-defence territoriality and are weak competitors with domestic herbivores, occupying marginal areas. In their view Oliva et al. (2019) put guanacos in the role of scapegoats, leaving domestic stocks unchecked. </p> <p>3. Equilibrium at regional scale does not preclude over and under-grazing at smaller (local) scales. By separating areas with and without domestic stocks Marino et al. (2019) estimated 28% and 73% overgrazing in the provinces of Chubut and Santa Cruz, respectively. We recalculated these estimates and found overgrazing of 28% and 47% for Chubut and Santa Cruz, respectively. But when combined with guanaco densities overgrazing increases to 48 and 108% for Chubut and Santa Cruz, respectively.</p> <p>4. We question the hypothesised lack of competitive value and effective self-regulating mechanisms in guanacos. A data set of 13 sheep farms show densities of 12-61 (mean 27) guanacos.km-2 with a combined grazing pressure above carrying capacity. Populations in a protected area in Chubut reached 42 guanacos.km-2, crashed during drought with 60% mortality, and increased thereafter to 70 guanacos.km-2, but even at peak numbers recruitment population rates remained extremely high. </p> <p>5. Synthesis and applications. Marino et al 2019 are right to question the apparent equilibrium of domestic stocks with carrying capacity, as they are concentrated in part of the territory that may be still overgrazed. But ground assessments show that guanaco populations can reach densities well over carrying capacity with or without sheep. This only stresses our conclusion that joint management of the native-domestic herbivore system is urgently needed. Farm management plans may transform an apparent competitor into a valuable natural complementary resource to sheep raising</p>
Ecology of domestic dogs Canis familiaris as an emerging reservoir of Guinea worm Dracunculus medinensis infection
<p>Global eradication of human Guinea worm<i> </i>disease (dracunculiasis) has been set back by the emergence of infections in animals, particularly domestic dogs <i>Canis familiaris</i>. The ecology and epidemiology of this reservoir is unknown. We tracked dogs using GPS, inferred diets using stable isotope analysis and analysed correlates of infection in Chad, where numbers of Guinea worm infections are greatest. Dogs had small ranges that varied markedly among villages. Diets consisted largely of human staples and human faeces. A minority of ponds, mostly <200 m from dog-owning households, accounted for most dog exposure to potentially unsafe water. The risk of a dog having had Guinea worm was reduced in dogs living in households providing water for animals but increased with increasing fish consumption by dogs. Provision of safe water might reduce dog exposure to unsafe water, while prioritisation of proactive temephos (Abate®) application to the small number of ponds to which dogs have most access is recommended. Fish might have an additional role as transport hosts for Guinea worm, by concentrating copepods infected with worm larvae.</p>
Data from: The relevance of gene flow with wild relatives in understanding the domestication process
<p><span><span><span>The widespread use of genomic tools has allowed for a deeper understanding of the genetics and the evolutionary dynamics of domestication. Recent studies have suggested that multiple domestications and introgression are more common than previously thought. However, the ability to correctly infer the domestication process depends on having an adequate representation of wild relatives. Cultivated maize (<i>Zea mays</i> spp. <i>mays</i>) is one of the most important crops in the world, with a long and a relatively well documented history of domestication. The current consensus points towards a single domestication event from teosinte <i>Zea mays</i> spp. <i>parviglumis</i> from the Balsas Basin in Southwest central Mexico. However, the underlying diversity of teosintes from lowlands <i>Z. mays</i> spp<i>. parviglumis</i> and highlands <i>Zea mays</i> spp. <i>mexicana</i>) was not taken into account in early studies. We used 32,739 SNPs obtained from 29 teosinte populations and 43 maize landraces to explore the relationship between wild and cultivated members of <i>Zea.</i> We then inferred levels of gene flow among teosinte populations and maize, the degree of population structure of <i>Zea mays</i> subspecies, and potential domestication location of maize. We confirmed a strong geographic structure within <i>Z. mays </i>spp. <i>parviglumis</i> and documented multiple gene flow events with other members of the genus, including an event between <i>Z. mays</i> spp. <i>mexicana </i>and maize. Our results suggest that the likely ancestor of maize may have been domesticated not in the Balsas Basin as previously thought, but in Jalisco or in the Pacific coast, and that different populations of the teosinte subspecies have contributed to modern maize's gene pool. Our results points towards a long period of domestication marked by gene flow with wild relatives, making domestication a long and ongoing process. </span></span></span></p>
Something old, something new: evolution of Colombian weedy rice (Oryza spp.) through de novo de-domestication, exotic gene flow, and hybridization
<p>Weedy rice (<i>Oryza</i> spp.) is a worldwide weed of domesticated rice (<i>O. sativa</i>), considered particularly problematic due to its strong competition with the crop, which leads to reduction of yields and harvest quality. Several studies have established multiple independent origins for weedy rice populations in the U.S. and various parts of Asia; however, the origins of weedy rice in South America have not been examined in a global context. We evaluated the genetic variation of weedy rice populations in Colombia, as well as the contributions of local wild<i> Oryza </i>species, local cultivated varieties, and exotic <i>Oryza</i> groups to the weed, using polymorphism generated by genotyping by sequencing (GBS). We found no evidence for genomic contributions from local wild <i>Oryza </i>species<i> </i>(<i>O. glumaepatula</i>, <i>O. grandiglumis</i>, <i>O. latifolia </i>and <i>O. alta</i>) to Colombian weedy rice. Instead, Colombian weedy rice has evolved from local <i>indica</i> cultivars, and has also likely been inadvertently imported as an exotic pest from the US. Additionally, weeds comprising <i>de novo</i> admixture between these distinct weedy populations now represent a large proportion of genomic backgrounds in Colombian weedy rice. Our results underscore the impressive ability of weedy rice to evolve through multiple evolutionary pathways, including in situ de-domestication, range expansion, and hybridization.</p>
Data from: Transmission pathways and spillover of an erythrocytic bacterial pathogen from domestic cats to wild felids
Many pathogens infect multiple hosts, and spillover from domestic to wild species poses a significant risk for spread of diseases that threaten wildlife and humans. Documentation of cross-species transmission, and unravelling the mechanisms that drive it, remains a challenge. Focusing on co-occurring domestic and wild felids, we evaluate possible transmission mechanisms and evidence of spillover of 'Candidatus Mycoplasma haemominutum' (CMhm), an erythrocytic bacterial parasite of cats. We examine transmission and possibility of spillover by analysing CMhm prevalence, modeling possible transmission pathways, deducing genotypes of CMhm pathogens infecting felid hosts based on sequences of the bacterial 16S rRNA gene, and conducting phylogenetic analyses with ancestral state reconstruction to identify likely cross-species transmission events. Model selection analyses suggest both indirect (i.e., spread via vectors) and direct (i.e., via inter-specific predation) pathways may play a role in CMhm transmission. Phylogenetic analyses indicate that transmission of CMhm appears to predominate within host species, with occasional spillover, at unknown frequency, between species. These analyses are consistent with transmission by predation of smaller cats by larger species, with subsequent within-species persistence after spillover. Our results implicate domestic cats as a source of global dispersal and spillover to wild felids via predation. We contribute to the emerging documentation of predation as a common means of pathogen spillover from domestic to wild cats, including pathogens of global conservation significance. These findings suggest risks for top predators as bioaccumulators of pathogens from subordinate species.
Three geographically separate domestications of Asian rice
<p>Data sets reported in Civan, P., Craig, H., Cox, C.J. & Brown, T. Three geographically separate domestications of Asian rice. Nature Plants 1, 15164 (2015).</p> <p>SNP matrices extracted from the whole genome SNP dataset [Huang, X. et al. A map of rice genome variation reveals the origin of cultivated rice. Nature 490, 497–503 (2012)].</p> <p>Data formats:<br> - PED format (.ped, .pedind, .pedsnp)<br> - PHYLIP format (.phy pseudomolecules)</p>
Social network structure is robust to parasite induced changes in contact behavior of domestic sheep
<p>Understanding how parasitism may affect social behavior and social networks is key to understanding the impact of infection on a population. Infection can disrupt social networks by altering the behavior of both infected individuals (e.g. by reducing activity) and the behavior of uninfected individuals (e.g. avoiding sick individuals), both of which can <span>have an impact on social group dynamics and parasite transmission</span>. Here we test experimentally how parasitism affects social contact behavior and social network structure using a common parasite infection of sheep. Three treatment groups, each with 4 replicate social groups were established (i) Parasitised; all lambs were infected with a parasitic nematode, (ii) Non-parasitised; all lambs remained uninfected (iii) Mixed; part of each group were infected, and part of the group remained uninfected. Contact behaviours of each individual were recorded using proximity loggers during four phases of infection (pre-parasite, pre-patent, patent-parasite, post-parasite). We found infected individuals in the parasitised and mixed groups reduced contact frequency following infection. Infected individuals in mixed groups however reduced contact frequency to a greater extent than infected animals in the fully parasitised group. D<span>espite the reduction in contacts between infected animals in the mixed group, the social network structure was unaffected, as non-infected individuals maintained pre-parasite levels of social interactions with their infected conspecifics. </span><span>These results demonstrate </span>how infection can impact the social behavior of all animals within a group, and how the expression of behavioral change may depend on the parasitic status of all group members and the response of uninfected conspecifics.</p>
Data and code from "Facial blushing and feather fluffing are indicators of emotions in domestic fowl"
<p>Data to produce the manuscript and R codes use to analyse the data</p>
Codes and scripts used in the Origin and de novo domestication of sweet orange
<p>Codes and scripts used in the Origin and de novo domestication of sweet orange.</p>
Supplementary Materials - Integrating Spatial Analyses and Microbotanical Remains: A Methodological Approach for Investigating Plant Processing Activities and Domestic Spaces at Neolithic Çatalhöyük.
<p><strong>Supplementary Materials I, II, and III - Integrating Spatial Analyses and Microbotanical Remains: A Methodological Approach for Investigating Plant Processing Activities and Domestic Spaces at Neolithic Çatalhöyük.</strong></p> <p> </p> <p><strong>Supplementary I</strong> contains the raw data for the microbotanical analyses on Buildings 80 and 131. It consists of laboratory track sheets and the raw counts of phytoliths and starch grains from each building.</p> <p><strong>Supplementary II</strong> contains: a) A detailed description of all the starch grain typologies encountered in this research along with references from modern reference collections; b) A visual example of each of the phytolith morphotypes identified and c) The variogram and the Kriging error variances.</p> <p><strong>Supplementary III</strong> refers to the R code, building shape files (Mask), and spatial data utilized to produce the Kriging and IDW stipital objects.</p>
Genomic epidemiology of Escherichia coli: antimicrobial resistance through a One Health lens in sympatric humans, livestock and peri-domestic wildlife in Nairobi, Kenya
<p><strong><span>Background</span></strong></p> <p><span>Livestock systems have been proposed as a reservoir for antimicrobial-resistant (AMR) bacteria and AMR genetic determinants that may infect or colonise humans, yet quantitative evidence regarding their epidemiological role remains lacking. Here we used a combination of genomics, epidemiology and ecology to investigate patterns of AMR gene carriage in <em>Escherichia</em> <em>coli</em>, regarded as a sentinel organism.</span></p> <p><strong><span>Methods</span></strong></p> <p><span>We conducted a structured epidemiological survey of 99 households across Nairobi, Kenya, and whole genome sequenced <em>E</em>. <em>coli</em> isolates from 311 human, 606 livestock, and 399 wildlife faecal samples. We used statistical models to investigate the prevalence of AMR carriage and characterise AMR gene diversity and structure of AMR genes in different host populations across the city. We also investigated house-hold level risk factors for exchange of AMR genes between sympatric humans and livestock.</span></p> <p><strong><span>Findings</span></strong></p> <p><span>We detected 56 unique acquired genes along with 13 point mutations present in variable proportions in human and animal isolates, known to confer resistance to nine antibiotic classes. We find that AMR gene community composition is not associated with host species, but AMR genes were frequently co-located, potentially enabling the acquisition and dispersal of multi-drug resistance in a single step. We find that whilst keeping livestock had no influence on human AMR gene carriage, the potential for AMR transmission across human-livestock interfaces is greatest when manure is poorly disposed of and in larger households.</span></p> <p><strong><span>Conclusions</span></strong></p> <p><span>Findings of widespread carriage of AMR bacteria in human and animal populations, including in long-distance wildlife species, in community settings, highlight the value of evidence-based surveillance to address antimicrobial resistance on a global scale. Our genomic analysis provided in-depth understanding of AMR determinants at the interfaces of One-Health sectors that will inform AMR prevention and control.</span></p>
A domesticated phage suppresses competitors in historical and modern metapopulations of pathogenic bacteria
<p>Bacteria have repeatedly repurposed the machinery of their viruses (bacteriophage) to kill strains of neighboring bacteria. These bacteriophage (phage)-derived elements are strain-specific in their killing activity, and this specificity has been proposed to drive bacterial population dynamics. Direct evidence of the impact of phage-derived elements on natural populations over time is limited. Here we identified viral sequences in a metapopulation of wild plant-associated <em>Pseudomonas</em> spp. genomes. We discovered that the most abundant viral cluster does not encode an intact phage but instead encodes a tailocin: a phage-derived element that bacteria use to kill bacterial competitors. Each pathogenic <em>Pseudomonas</em> sp. strain carries one of a few distinct tailocin variants, which target variable polysaccharides in the outer membrane of co-occurring pathogenic strains. Analysis of historic herbarium samples from the past 170 years revealed that the same tailocin and receptor variants have persisted in the <em>Pseudomonas</em> populations for at least two centuries, suggesting the continued use of a defined set of tailocin haplotypes and receptors. These results indicate that tailocin genetic diversity can be mined to develop targeted "tailocin cocktails" for microbial control.</p>
Supplementary material and data from: Cranial volume and palate length of cats, Felis spp., under domestication, hybridisation and in wild populations
<p>Reduced brain size, compared with wild individuals, is argued to be a key characteristic among domestic mammal species, and is often thought to be a component of the "domestication syndrome". However, brain size comparisons are often based on old, inaccessible literature and in some cases drew comparisons between domestic animals and wild species that are no longer thought to represent the true progenitor species of the domesticated variant in question. Here we set out to replicate results concerning cranial volumes in domestic cats that were published in the 1960s and 1970s and compared wildcats, domestic cats and their hybrids. In light of new research and ideas surrounding domestication and its effects on domestic animals a replication of these studies is highly relevant. Apart from replicating these studies we also present new data on palate length in Felis cat skulls.</p> <p>Here we provide all data (both new and old digitzed data) upon which we based the analysis discussed in this manuscript. We further provide a link to the code used in the analysis.</p>
No disruption of rhizobial symbiosis during early stages of cowpea domestication
<p>Modern agriculture intensely selects aboveground plant structures, while often neglecting belowground features, and evolutionary tradeoffs between these traits are predicted to disrupt host control over microbiota. Moreover, drift, inbreeding, and relaxed selection for symbiosis in crops might degrade plant mechanisms that support beneficial microbes. We studied the impact of domestication on the nitrogen fixing symbiosis between cowpea and root-nodulating <i>Bradyrhizobium.</i> We combined genome-wide analyses with a greenhouse inoculation study to investigate genomic diversity, heritability, and symbiosis trait variation among wild and early-domesticated cowpea genotypes<i>. </i>Cowpeas experienced modest decreases in genome-wide diversity during early domestication. Nonetheless, domesticated cowpeas responded efficiently to variation in symbiotic effectiveness, by forming more root nodules with nitrogen-fixing rhizobia and sanctioning non-fixing strains. Domesticated populations invested a larger proportion of host tissues into root nodules than wild cowpeas. Unlike soybean and wheat, cowpea showed no compelling evidence for degradation of symbiosis during domestication. Domesticated cowpeas experienced a less severe bottleneck than these crops and the low nutrient conditions in Africa where cowpea landraces were developed likely favored plant genotypes that gain substantial benefits from symbiosis. Breeders have largely neglected symbiosis traits, but artificial selection for improved plant responses to microbiota could increase plant performance and sustainability.</p>
Twenty-five metagenome assembled genomes recovered from the gut microbiome of the domestic ferret, Mustela putorius
<p>This dataset is composed of 25 unique metagenome assembled genomes (MAGs) recovered from the gut microbiome of three domestic ferrets (<em>Mustela putorius</em>). Details on both MAG and host ferret metadata, as well as information on sample collection, DNA sequencing, and bioinformatic processing can be found in the American Society for Microbiology Resource Announcement by Amundson et al. (in prep). </p>
Microbiome of domestic water from rural communities in the southern caribbean: water quality and human health implications
<p><strong>LIST OF SUPPLEMENTARY DATA FILES</strong></p> <p>Chapter 4 - The microbiome of domestic water in the rainwater harvesting-dependent island community of Carriacou, Grenada in the Southern Caribbean</p> <p>Chapter 5 - Microbial composition of drinking water in Speightstown, Barbados</p> <p>Chapter 6 - Bacterial diversity of drinking water in Nariva, Trinidad</p> <p>Chapter 7 - A preliminary assessment of protozoans in various water sources in Nariva, Trinidad</p>
Introgressive hybridisation between domestic pigs (Sus scrofa domesticus) and endemic Corsican wild boars (S. s. meridionalis): effects of human-mediated interventions
<p class="MsoNormal"><span>Owing to the intensified domestication process with artificial trait selection, introgressive hybridisation between domestic and wild species poses a management problem. Traditional free-range livestock husbandry, as practiced in Corsica and Sardinia, is known to facilitate hybridisation between wild boars and domestic pigs (<em>Sus scrofa</em>). Here, we assessed the genetic distinctness and genome-wide domestic pig ancestry levels of the Corsican wild boar subspecies <em>S. s. meridionalis,</em> with reference to its Sardinian conspecifics, employing a genome-wide single nucleotide polymorphism (SNP) assay and mitochondrial control region (mtCR) haplotypes. We also assessed the reliance of morphological criteria and the melanocortin-1 receptor (<em>MC1R</em>) coat colour gene to identify individuals with domestic introgression. While Corsican wild boars showed closest affinity to Sardinian and Italian wild boars compared to other European populations based on principal component analysis, the observation of previously undescribed mtCR haplotypes and high levels of nuclear divergence (Weir's </span><span> </span><span> 0.14) highlighted the genetic distinctness of Corsican <em>S. s. meridionalis</em>. </span><span>Across three complementary analyses of mixed ancestry (i.e., STRUCTURE, PCADMIX, and ELAI), proportions of domestic pig ancestry were estimated at 9.5% in Corsican wild boars, which was significantly higher than in wild boars in Sardinia, where free-range pig keeping was banned in 2012. Comparison of morphologically pure- and hybrid-looking Corsican wild boars suggested a weak correlation between morphological criteria and genome-wide domestic pig ancestry. The study highlighted the usefulness of molecular markers to assess the direct impacts of management practices on gene flow between domestic and wild species.</span></p>
Artificial selection on cis-element of Abl contributes cocoon yield increase in domestic silkworm
<p><span>The silkworm (</span><em><span>Bombyx mori</span></em><span>) is an important silk-producing domestic insect.</span><span> The quality and yield of the silk produced by <em>B. mori </em>exceeds that of its ancestor, the wild silkworm <em>B. mandarina</em>. However, to date little is known about the molecular mechanisms underlying domestication-related increases in silk yield. Here, we identified a gene associated with both domestication and silk-related quantitative trait locus (QTL): Abelson tyrosine protein kinase (<em>Abl</em>). </span><span>Population genomic data for <em>B. mori</em> and <em>B. mandarina</em> identified obvious signatures of artificial selection in the genomic region bearing the <em>Abl</em></span><span><em> </em>gene. T</span><span>here were two fixed nucleotide substitutions (−244 and −1311) in the </span><span>tran</span><span>scription factor binding motif of the upstream regulatory region of <em>B. mori Abl</em>.</span> <span>Compared to <em>Abl </em>in the wild silkworm <em>B. mandarina</em>, <em>B. mori Abl</em> exhibited significantly greater promoter activity and was upregulated in the silk gland from the last day of the 5<sup>th</sup> larval instar to pupal stage (P0). Compared to the wild type, CRISPR/Cas9-generated <em>Abl </em>loss-of-function mutants </span><span>exhibited a higher sensitivity to diseases, shorter developmental duration, and reductions in economically important silk traits, including cocoon weight, pupal weight, and cocoon layer thickness. Comparison of silk-gland transcriptomes between the wild type and the mutant indicated that genes enriched in ribosome biosynthesis, splicing, RNA transport, and the carbon metabolism were significantly downregulated in the mutants. Weighted gene co-expression network analysis (WGCNA) confirmed that genes related to ribosome biosynthesis were pivotal, driving the significant differentiation in silk yield between <em>B. mori</em> and <em>B. mandarina</em>. Here, we demonstrated that artificial selection acts on the cis-elements of silk-trait QTL gene <em>Abl </em>in a novel case (the domestic silkworm), and that this selection pressure increased <em>Abl </em>promoter activity and expression level. By promoting protein translation and synthesis, artificial selection further enhanced the robustness of silkworm larvae and improved cocoon silk synthesis.</span></p>
Influence of pollen dispersal and mating pattern in domestication of intermediate Wheatgrass, a novel perennial food crop
<p>Intermediate wheatgrass (IWG) is a perennial forage grass that is currently being domesticated as a grain crop. It is a primarily wind-pollinated outcrossing species and expresses severe inbreeding depression when self-pollinated. Characterization of pollen dispersal, mating parameters, and change in genetic diversity due to pollen movement is currently lacking in IWG. In this study, we examined pollen dispersal in an IWG selection nursery by evaluating 846 progeny from 15 mother plants and traced their parentage to 374 fathers. A set of 2500 genomic loci was used to characterize the population. We assigned paternity to 769 (91%) progeny and the average number of fathers per mother plant was 37, from an average of 56 progeny examined per mother. An extensive number (80%) of pollination events occurred within 10 m of the mother plants. Pollination success was not correlated with trait attributes of the paternal genotypes. Mating system analysis confirmed that IWG is highly out-crossing and inbreeding was virtually absent. Neither genetic diversity nor the genome-estimated trait values of progeny were significantly affected by pollinator distance. The distance of pollinator in an IWG breeding nursery therefore was not found to be a major contributor in maintaining genetic diversity. These findings reveal the pollen dispersal model in IWG for the first time and its effect on genetic diversity, which will be valuable in designing future IWG breeding populations. Information generated and discussed in this study could be applied in understanding gene flow and genetic diversity of other open-pollinated species.</p>
Does prey scarcity increase the risk of wolf attacks on domestic dogs?
<p>Gray wolf (Canis lupus) predation on domestic dogs (Canis familiaris) is a considerable wolf-human conflict issue in several regions of Europe and North America but has not been well documented in the scientific literature. Livestock depredations by wolves may be related to the abundance of wild prey. Regardless of the presumed motivations of wolves for attacking dogs (likely due to interference competition and predation), the abundance of wild prey populations may also influence the risk of wolf attacks on dogs. We examined whether the annual number of tatal attacks by wolves on dogs was related to the abundance of primary prey, including wild boar (<em>Sus scrofa</em>) and roe deer (<em>Capreolus capreolus</em>) in Estonia, as well as the abundance of moose (<em>Alces alces</em>) in Finland. Statistical models resulted in significant negative relationships, thus providing evidence that the risk of attacks in both house yards (Estonia) and hunting situations (Finland) was highest when the density of wild prey was low. Wild ungulates cause damage to agriculture and forestry, but they seem to mitigate conflicts between wolves and humans; therefore, it is necessary to develop a holistic, multispecies management approach in which the importance of wild ungulates for large carnivores is addressed. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.