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Fig. 62 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 62. Localities of Neacomys sampled for sequence variation in the cytochrome­b mitochondrial gene. Diagonal hatching indicates distribution of N. spinosus; each of the seven small­bodied haplotype clades identified in the consensus bootstrap maximum parsimony tree (fig. 63) are individually numbered and indicated by stippling. Localities are identified as in table 22. The box circumscribes the Rio Juruá basin of western Brazil, for which the included samples are analyzed and presented separately (fig. 64)

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Fig. 35 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 35. Monthly patterns of trap success (number of captures relative to total number of trap ''nights'') for both terra firme (solid circles) and várzea (stippled squares) forest localities. Each monthly sample is at a different pair of cross­river localities (see text).

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Fig. 30 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 30. Detailed map of the Rio Juruá at Jainu and Barro Vermelho (localities 11 and 12), illustrating position of camp relative to major habitat types, secondary trap lines (bold numbered and lettered lines) and placement of terra firme and várzea standardized lines (see text for further details). Not drawn to scale.

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Fig. 32 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 32. Mouth Regional Area of the Rio Juruá in the state of Amazonas, Brazil. The four primary sample localities are indicated by numbers; the single secondary locality by letter (see text for precise locality information). Diagonal hatching along sides of the river indicates the extent of várzea forest, which floods annually. Redrawn directly from RadamBrasil 1:250,000 series, Folha Juruá (SA.19­Z­D), 1977.

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Fig. 58 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 58. Map of sample localities of species of pouched four­eyed opossums (Philander) from the lowland forests of Middle America, Amazonia, and the Atlantic Forest. Localities are numbered or lettered as in table 16, which provides provenance data and catalog numbers of voucher specimens Approximate geographic limits to the ranges of the western Amazonian species P. andersoni and P mcilhennyi are indicated. Sample localities are grouped by symbol into the cytochrome­b clades identified in fig. 59.

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Fig. 36 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 36. Number of captures relative to the seven­day trap period for the standardized terra firme (solid circles) and várzea (solid squares) lines at Penedo (locality 7) and Nova Empresa (locality 8) sites, respectively. Regression equations for each relationship are given.

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Fig. 69 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 69. Dorsal, ventral, and lateral views of the cranium of the holotype (MVZ 171486) of Neacomys musseri, an old adult. The skin and maxillary toothrows are illustrated in figures 67 and 70 respectively. Magnification = ×4.

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Fig. 43 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 43. Strict consensus of four equally minimum­length maximum parsimony trees for cytochrome­b haplotypes of Amazonian slender mouse opossums, Marmosops. Data are the initial 630 bp of sequence; the tree is rooted by comparison to species of Marmosa (data from Patton et al., 1996); branch lengths are proportional to the number of character changes. Specific localities and specimen voucher numbers are listed in table 7. Haplotypes for specimens from the Rio Juruá are identified by heavy lines and bold type; numbers refer to the specific locality as identified in the text and the map, fig. 1. Bold numbers at internal nodes are bootstrap values, based on 1000 iterations; percentages are average Kimura twoparameter distances. Data are given only for nodes with bootstrap values> 50. Tree length = 530 steps; CI = 0.545; RI = 0.669.

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Fig. 31 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 31. Details of the placement of the standardized sample lines in the várzea forest at Jainu, right bank (locality 11) and in both várzea and terra firme forest on the left bank at Barro Vermelho (locality 12). Distances (in meters) from the edge of the river are noted.

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Fig. 46 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 46. Views of the interorbital region of crania of same­age specimens of: A, Marmosops noctivagus (JLP 15306, Penedo [locality 7]); B, Marmosops impavidus (MNFS 760, Barro Vermelho [locality 12]); and C, Marmosops neblina (JLP 15450, Nova Empresa [locality 8]). All specimens are drawn to the same scale.

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Fig. 54 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 54. Color pattern of the venter of Micoureus demerarae (left, JLP 15741 [Condor, locality 6]) and M. regina (right, MNFS 773 [Jainu, locality 11]) illustrating differences in the degree of encroachment of the lateral gray­based hairs onto the midventral region in the thoracic and abdominal regions between the two species.

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Fig. 72 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 72. Upper right toothrows of four specimens of Neacomys from eastern Perú and Rio Juruá basin of western Brazil. From left to right: N. musseri (holotype, MVZ 171486); N. musseri (MNFS 1395, locality 2); N. minutus (JLP 16061, locality 9); N. spinosus (JLP 15292, locality 7).

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Fig. 48 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 48. Map of sample localities of the brown four­eyed opossum Metachirus nudicaudatus from which individuals have been examined for sequence variation in the mtDNA cytochrome­b gene. Symbols are keyed to the reciprocally monophyletic clades identified in the maximum parsimony tree, fig 49. Provenance data are given in table 10.

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Fig. 50 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 50. Maximum parsimony tree of cytochrome­b haplotypes of Micoureus demerarae and M. regina from the Rio Jurua´, based on 401 bp of sequence. The tree was rooted by comparison to homologous sequence from specimens of Marmosa rubra and Monodelphis domestica (data from Patton et al., 1996). Branch lengths are proportional to the number of character changes. Comparisons were specifically made between specimens collected at the same or nearby localities. Each unique haplotype is identified by locality designation and field number. Bold numbers at internal nodes are bootstrap values, based on 1000 iterations; percentages are average Kimura two­parameter distances. Tree length = 131 steps; CI = 0.740.

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Fig. 39 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 39. Majority­rule consensus tree of 605 equally minimal length maximum parsimony trees for cytochrome­b haplotypes of the opossums, Didelphis marsupialis from Amazonia and D. aurita from the Atlantic Forest. Data are the initial 660 bp of sequence. Branch lengths are proportional to the number of character changes. Haplotypes for specimens from the Rio Juruá are identified by heavy lines and bold type; localities for all specimens are listed in table 6. The tree is rooted by comparison to sequences of D. virginiana and Philander opossum. Tree length = 75 steps; CI = 0.800, RI = 0.807 Bold numbers at internal nodes are bootstrap values, based on 1000 iterations; percentages are average Kimura two­parameter distances.

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Fig. 65 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 65. Strict consensus maximum parsimony tree of spiny mice, genus Neacomys, from the Rio Jurua´, based on 414 bp of cytochrome­b sequence and rooted by comparison to Oligoryozmys microtis. Branch lengths are proportional to the number of character changes. Numbers at nodes are bootstrap values, based on 1000 replicates; percentages are average Kimura two­parameter distances. Individual haplotypes are identified by field catalog and locality number (from the map, fig. 1). Tree length = 176 steps; consistency index = 0.795; retention index = 0.951.

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Fig. 61 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 61. Dorsal (top) and ventral (bottom) views of the cranium of Holochilus sciureus (MNFS 316, from Eirunepe´, left bank Rio Jurua´ Amazonas, Brazil [locality j]). Magnification = ×2.

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Fig. 51 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 51. Map of sampled localities of the woolly mouse opossums, genus Micoureus, for which cytochrome­b sequence data are available. Localities are identified as in the tree, fig. 52; specific localities and voucher specimen catalog numbers are given in table 12. The approximate range of each of the four species we recognize is indicated, largely based on the maps in Emmons and Feer (1997).

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Fig. 66 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 66. Habitat along the road from Paucartambo to Shintuya, in the Department de Cusco in southeastern Peru´, at the type locality of Neacomys musseri. The species was taken in Victor rat traps and Sherman live traps baited with a mixture of peanut butter and rolled oats or sardines and rolled oats and placed in the thick vegetation along both sides of the road. Photograph by J. L. Patton, April 1984.

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Fig. 60 in Mammals Of The Rio Juruá And The Evolutionary And Ecological Diversification Of Amazonia

Fig. 60. Dorsal (top row) and ventral (bottom) views of the crania of large Amazonian Sciurus Left: S. igniventris (JUR 547, locality 14). Right: S. spadiceus (JLP 15666, locality f). Natural size.

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International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

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OpenNeuro

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