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146 results for “Microbial function”
Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: implications for disease suppression
GEO Series GSE112489. Archaea; uncultured soil bacterium; Bacteria; Eukaryota. 50 samples. Type: Other.
Enhanced metabolic potentials and functional gene interactions of microbial stress response towards high elevation in freshwater lakes
GEO Series GSE156784. Archaea; uncultured microorganism; Bacteria; Eukaryota; Viruses. 24 samples. Type: Other.
Data for "Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants"
Open the record for dataset details and reuse information.
Marine microbial endoliths: biodiversity and function
<p><span>Organisms that colonize the interior of rocks, shell hash and other skeletal fragments are known as endoliths. Coastal euendoliths are ideal model systems for microbial biogeographical studies, as coasts comprise the most abundant biome on the Earth that is stable, characterized by relatively low productivity and turnover rates. Euendoliths of marine environments especially along the intertidal and supratidal ranges of carbonate coasts are significant contributors to marine bioerosion, as documented by microscopic, but hardly any molecular studies. Endoliths expand our understanding about the ability of organisms to survive and even thrive in extreme conditions. They also raise new ideas regarding the possibility of extraterrestrial life and may alter our ideas about the origin of life on Earth. </span></p> <p><span>Despite their environmental relevance, the mechanism that enables them to dissolve carbonates, even in waters supersaturated with respect to calcite and aragonite, has remained elusive. In our study we provide a comparative sequence analysis using MiSeq DNA and RNA pyrosequencing of the 16S rRNA gene combined with extensive microscopy of the endolithic community from different geographical regions, and different nutrient regimes.</span></p> <p><span>Our forte is the use of molecular tools for the first time to carbonate penetrating microorganisms, where they naturally occur, an approach that will provide a direct information link between cell´s phylogenetic and metabolic markers.</span><span> Our data provide information concerning16S rRNA RNA-seq vs. DNA pyrosequencing of heterotrophic bacteria and cyanobacteria in order to differentiate between active and dormant populations from coastal endoliths. </span></p> <p><span>We applied for the first time single cell genomics (SCG) to endolithic organisms, matching phylogeny and metabolism in the uncultured cyanobacterial endoliths that dominate marine rocks and biochemical cycles.</span></p>
Comparing Gut Microbial Composition and Functional Adaptations between SPF and Non-SPF pigs
GEO Series GSE264183. Sus scrofa. 8 samples. Type: Expression profiling by high throughput sequencing.
Functional gene abundance of tundra soil microbial communities sampled at the EML Thaw Gradient site, AK in May 2004
GEO Series GSE97107. Eukaryota; Viruses; synthetic construct; Bacteria; Archaea. 107 samples. Type: Genome variation profiling by array.
Microarray-based Characterization of Microbial Community Functional Structure and Heterogeneity Associated with Acid Mine Drainages
GEO Series GSE27542. unidentified microorganism. 9 samples. Type: Other.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the global transcriptome
GEO Series GSE283495. Mus musculus. 29 samples. Type: Expression profiling by high throughput sequencing.
Microbial community structure and functions are resilient to metal pollution along two forest soil gradients
GEO Series GSE59620. uncultured bacterium; Bacteria. 12 samples. Type: Genome variation profiling by array.
Climate warming and nutrient enrichment jointly affect microbial functional potentials important to nutrient cycling in shallow-lake mesocosms
GEO Series GSE155582. Eukaryota; Viruses; uncultured soil microorganism; Bacteria; Archaea. 16 samples. Type: Other.
Effect of biogas slurry combined with biochar on soil microbial function gene
GEO Series GSE133800. Archaea; Bacteria; Eukaryota; Viruses; uncultured soil microorganism. 15 samples. Type: Other.
The microbial taxonomic and functional compositions at the Jasper Ridge Global Change Experiment
GEO Series GSE126737. uncultured soil microorganism; soil metagenome. 64 samples. Type: Other.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the single cell transcriptome
GEO Series GSE284074. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The microbial functional diversity in response to warming incubation at Alaska as characterized by GeoChip
GEO Series GSE89644. Archaea; Bacteria; soil metagenome; Eukaryota; Viruses. 30 samples. Type: Other.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the proximal to distal transcriptome
GEO Series GSE283143. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
Metagenomic analysis revealed higher microbial and functional gene diversities in deep landfill
GEO Series GSE68712. Bacteria. 15 samples. Type: Other.
Functional responses of coral microbial communities to ocean acidification
GEO Series GSE182928. Bacteria; Galaxea fascicularis; Eukaryota; Viruses; Archaea. 9 samples. Type: Other.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the crypt/villus transcriptome
GEO Series GSE283142. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
The microbial functional diversity in response to altered precipitation on Tibet Plateau as characterized by GeoChip
GEO Series GSE82006. uncultured soil microorganism. 18 samples. Type: Other.
The microbial functional gene diversity in anaerobic digesters under different organic loadings
GEO Series GSE93419. uncultured soil microorganism; sludge metagenome. 42 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.