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ShareScore release 0.7.1
Dataset results
156 results for “Salmo salar”
Impact of seasonality on immunotranscriptomic regulation of Atlantic salmon (Salmo salar) skin against Caligus rogercresseyi infestation during open-sea cages productive regime
GEO Series GSE294058. Salmo salar. 12 samples. Type: Expression profiling by high throughput sequencing.
Identification of a responsive gene set to evaluate the potential impact of seismic exposure on Atlantic salmon (Salmo salar) inner ear
GEO Series GSE33257. Osmerus mordax; Salmo salar; Coregonus clupeaformis; Oncorhynchus mykiss; Oncorhynchus tshawytscha. 4 samples. Type: Expression profiling by array.
Global gene expresssion profiling the gills of amoebic gill disease (AGD) affected Atlantic salmon (Salmo salar)
GEO Series GSE9595. Oncorhynchus mykiss; Salmo salar; Oncorhynchus tshawytscha; Osmerus mordax; Coregonus clupeaformis. 20 samples. Type: Expression profiling by array.
Transcriptomic responses of Atlantic salmon (Salmo salar) to environmental enrichment during juvenile rearing
GEO Series GSE63982. Salmo salar. 30 samples. Type: Expression profiling by array.
Liver transcriptome profiling reveals that dietary DHA and EPA levels influence suites of genes involved in metabolism, redox homeostasis, and immune function in Atlantic salmon (Salmo salar)
GEO Series GSE128472. Salmo salar. 24 samples. Type: Expression profiling by array.
Data from: Genetic architecture of threshold reaction norms for male alternative reproductive tactics in Atlantic salmon (Salmo salar L.)
Alternative mating tactics have important ecological and evolutionary implications and are determined by complex interactions between environmental and genetic factors. Here, we study the genetic effect and architecture of the variability in reproductive tactics among Atlantic salmon males which can either mature sexually early in life in freshwater or more commonly only after completing a migration at sea. We applied the latent environmental threshold model (LETM), which provides a conceptual framework linking individual status to a threshold controlling the decision to develop alternative traits, in an innovative experimental design using a semi-natural river which allowed for ecologically relevant phenotypic expression. Early male parr maturation rates varied greatly across families (10 to 93%) which translated into 90% [64–100%] of the phenotypic variation explained by genetic variation. Three significant QTLs were found for the maturation status, however only one collocated with a highly significant QTL explaining 20.6% of the variability of the maturation threshold located on chromosome 25 and encompassing a locus previously shown to be linked to sea age at maturity in anadromous Atlantic salmon. These results provide new empirical illustration of the relevance of the LETM for a better understanding of alternative mating tactics evolution in natural populations.
Data from: Spatial and temporal genetic structure of a river-resident Atlantic salmon (Salmo salar) after millennia of isolation
The river-resident Salmo salar ("småblank") has been isolated from other Atlantic salmon populations for 9,500 years in upper River Namsen, Norway. This is the only European Atlantic salmon population accomplishing its entire life cycle in a river. Hydropower development during the last six decades has introduced movement barriers and changed more than 50% of the river habitat to lentic conditions. Based on microsatellites and SNPs, genetic variation within småblank was only about 50% of that in the anadromous Atlantic salmon within the same river. The genetic differentiation (FST) between småblank and the anadromous population was 0.24. This is similar to the differentiation between anadromous Atlantic salmon in Europe and North America. Microsatellite analyses identified three genetic subpopulations within småblank, each with an effective population size Ne of a few hundred individuals. There was no evidence of reduced heterozygosity and allelic richness in contemporary samples (2005–2008) compared with historical samples (1955–56 and 1978–79). However, there was a reduction in genetic differentiation between sampling localities over time. SNP data supported the differentiation of småblank into subpopulations and revealed downstream asymmetric gene flow between subpopulations. In spite of this, genetic variation was not higher in the lower than in the upper areas. The meta-population structure of småblank probably maintains genetic variation better than one panmictic population would do, as long as gene flow among subpopulations is maintained. Småblank is a unique endemic island population of Atlantic salmon. It is in a precarious situation due to a variety of anthropogenic impacts on its restricted habitat area. Thus, maintaining population size and avoiding further habitat fragmentation are important.
Endocrine and transcriptome changes associated with growth and differentiation of Atlantic (Salmo salar L.) salmon testes and immune activity of adipose tissue
GEO Series GSE263627. Salmo salar. 59 samples. Type: Expression profiling by array.
Anti-inflammatory effects of tetradecylthioacetic acid (TTA) in macrophage-like cells from Atlantic salmon (Salmo salar L.)
GEO Series GSE25328. Salmo salar; Oncorhynchus mykiss. 15 samples. Type: Expression profiling by array.
Data from: Genetic architecture of threshold reaction norms for male alternative reproductive tactics in Atlantic salmon (Salmo salar L.)
Open the record for dataset details and reuse information.
Data from: Spatial and temporal genetic structure of a river-resident Atlantic salmon (Salmo salar) after millennia of isolation
Open the record for dataset details and reuse information.
The Transcriptomic Responses of Atlantic Salmon (Salmo salar) to High Temperature Stress Alone, or in Combination with Moderate Hypoxia
GEO Series GSE146471. Salmo salar. 18 samples. Type: Expression profiling by array.
Combined hepatic transcriptional effects of gamma radiation and depleted uranium on Atlantic salmon (Salmo salar)
GEO Series GSE74012. Salmo salar; salmonid fish. 16 samples. Type: Expression profiling by array.
Genetic markers of the immune response of Atlantic salmon (Salmo salar) to Infectious Salmon Anemia Virus (ISAV)
GEO Series GSE19630. Oncorhynchus mykiss; Salmo salar. 81 samples. Type: Expression profiling by array.
Transcriptional response of Atlantic salmon (Salmo salar) after primary versus secondary exposure to Infectious Salmon Anemia Virus (ISAV)
GEO Series GSE28357. Salmo salar. 95 samples. Type: Expression profiling by array.
Profiling of Salmo salar in two Atlantic salmon types, a wild type versus transgenic.
GEO Series GSE3475. Salmo salar. 8 samples. Type: Expression profiling by array.
Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments
GEO Series GSE30555. Oncorhynchus mykiss; Salmo salar. 96 samples. Type: Expression profiling by array.
mRNA expression profiling of Atlantic salmon (Salmo salar) age-at-maturity-associated genes during different developmental stages
GEO Series GSE140434. Salmo salar. 96 samples. Type: Expression profiling by array.
Transcriptome analyses of Atlantic salmon (Salmo salar L.) erythrocytes infected with piscine orthoreovirus (PRV)
GEO Series GSE183005. Salmo salar. 8 samples. Type: Expression profiling by array.
Testis mRNA expression profiling of Atlantic salmon (Salmo salar) age-at-maturity-associated genes during different maturation stages
GEO Series GSE303890. Salmo salar. 24 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.