Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
15,733
datasets available to search
ShareScore release 0.9.0
Dataset results
15,733 results for “article”
Data from article "Is the Atlantic a Source for Decadal Predictability of Sea-Level Rise in Venice?"
<p>Data from the article Zanchettin D., et al.: Is the Atlantic a Source for Decadal Predictability of Sea-Level Rise in Venice?, Earth and Space Science, article number 2022EA002494</p> <p>The dataset contains:</p> <p>- annual time series of October-March average of relative sea level in Venice corrected for vertical land movement (VLMcorrectedRSL) with associated standard error of the mean (LMcorrectedRSL_SEM) for the period 1873-2019;</p> <p>- annual time series of estimate of subsidence in Venice (Subsidence) for the period 1873-2019</p> <p>- modeled state of Venice sea level with associated uncertainty, provided as mean (delta_mean), 1st percentile (delta_1_percentile) and 99th percentile (delta_99_percentile), for the period 1873-2019</p> <p>- modeled local stochastic trend of Venice sea level with associated uncertainty, provided as mean (beta_mean), 1st percentile (beta_1_percentile) and 99th percentile (beta_99_percentile), for the period 1873-2019</p>
Dataset for the article "Barriers and Opportunities for Sustainable Farming Practices and Crop Diversification Strategies in Mediterranean Cereal-Based Systems"
<p>Datasets from the surveys applied for the article "Barriers and Opportunities for Sustainable Farming Practices and Crop Diversification Strategies in Mediterranean Cereal-Based Systems" <a href="https://doi.org/10.3389/fenvs.2022.861225">https://doi.org/10.3389/fenvs.2022.861225</a></p>
Data, scripts, and figure of the article: The fasting heat production of broilers is a function of their body composition
<p>This data set contains the data, JMP scripts, and figures of the article titled "The fasting heat production of broilers is a function of their body composition" to be published in the journal Animal - Open Space.</p>
Data underlying the article "Effect of Submergence on the Lateral Exchange between Groyne Fields and their adjacent Main Channel"
<p>The paper addresses the identification of the mechanisms that dominate the flow around a series of obstacles placed at the sidewall of a channel, representing fluvial groynes. Accordingly, 2D velocity fields were measured through Particle Image Velocimetry in a horizontal plane spanning the area between groynes and an adjacent portion of the main channel. Four experimental cases were performed, addressing two groyne separations and two submergence conditions (emerged and submerged). For the submerged case, the ratio water depth to groyne height was 1.3. Groyne separations were characterized according to the corresponding width-to-length ratio of the groyne field (lambda = W/L = 1 and 2). A complete description of the experimental conditions, objectives and outcomes can be found in the article.</p> <p>The following data is included:</p> <ol> <li>Meanfields_[case].csv: spanwise and streamwise components of the velocity field, velocity magnitude and uv component of the Reynolds stress tensor averaged over time.</li> <li>Reynoldsstressesprofiles_[case].csv: uv component of the Reynolds stress tensor averaged over time at selected transverse profiles.</li> <li>PSD_[case].csv: power spectral densities computed from fluctuating velocity series extracted at selected locations.</li> <li>Autoccorrelation_[case].csv: normalized transverse autocorrelation functions computed from fluctuating velocity series extracted at selected locations.</li> <li>PODenergycontribution.csv: energy contribution from the first 20 POD modes computed for the case studies.</li> <li>PODtemporalcoefficients.csv: temporal coefficients obtained from the first two modes for the case studies.</li> <li>PODspectra_[case].csv: spectra of the temporal coefficients corresponding to modes 1 to 4 for the cases in study.</li> <li>PODspatialmodes_[case].csv: first two spatial modes computed for the case studies.</li> </ol>
Ancillary data for article "The general formulation for runoff components estimation and attribution at mean annual time scale"
<p>The mean annual (1960-1990) precipitation and estimated model parameters wetting potential (Wp), vaporization potential (Vp) and upper limit of <span>the portion remaining after precipitation (</span>Up) of 312 catchments over China.</p>
Bibliographic metadata of articles in "Krankenpflege" and "GERONTOLOGIE CH. Praxis + Forschung" published by Swiss university members
<p>The swissuniversities-funded project GOAL (Unlocking the Green Open Access PotentiaL in scholarly and professional journals in Switzerland) aims to develop case scenarios for the semi-automatic inclusion of full-text articles from professional journals in Open Access repositories. These articles originate from journals with which the project has successfully negotiated self-archiving rights. To this end, the project is testing semi-automated workflows that process and enrich bibliographic metadata and full-texts provided by two professional journals. The dataset contains bibliographic metadata of articles published in the two professional journals “Krankenpflege” (ISSN: 0253-0465) and “GERONTOLOGIE CH. Praxis + Forschung” by members of Swiss higher education institutions (HEI). Metadata provided by the publisher itself (Gerontologie CH.) or the database CINAHL Ultimate (“Krankenpflege”) were obtained, enriched, partly checked, and corrected to create a list of articles in tabular form as Excel and CSV of all articles published by Swiss university members between 2020 and 2023. Additionally, a table with the names of all swissuniversities members was created as a reference point to normalize the affiliation data. </p>
Aligned DNA sequence matrix for phylogenetic analyses in the article "A new glassfrog of the genus Centrolene (Amphibia: Centrolenidae) from the Subandean Kutukú Cordillera, eastern Ecuador"
<p>Aligned DNA sequence matrix for phylogenetic analyses of the article "A new glassfrog of the genus Centrolene (Amphibia: Centrolenidae) from the Subandean Kutukú Cordillera, eastern Ecuador"</p> <p>The matrix is in NEXUS format and has 6626 bp and 239 terminals.</p> <p>Partitions are as follows:</p> <div> <div>charset 12S = 1-967;</div> <div>charset 16S = 968-2130;</div> <div> </div> <div>charset BNDFcodonPos1 = 2133-2829\3;</div> <div>charset BNDFcodonPos2 = 2131-2830\3;</div> <div>charset BNDFcodonPos3 = 2132-2828\3;</div> <div> </div> <div> </div> <div>charset ND1codonPos1 = 2832-3786\3;</div> <div>charset ND1codonPos2 = 2833-3787\3;</div> <div>charset ND1codonPos3 = 2831-3788\3;</div> <div> </div> <div> </div> <div>charset CXCR4codonPos1 = 3790-4144\3;</div> <div>charset CXCR4codonPos2 = 3791-4142\3;</div> <div>charset CXCR4codonPos3 = 3789-4143\3;</div> <div> </div> <div> </div> <div>charset cmyccodonPos1 = 4145-4547\3;</div> <div>charset cmyccodonPos2 = 4146-4548\3;</div> <div>charset cmyccodonPos3 = 4147-4549\3;</div> <div> </div> <div> </div> <div>charset POMCcodonPos1 = 4551-5160\3;</div> <div>charset POMCcodonPos2 = 4552-5161\3;</div> <div>charset POMCcodonPos3 = 4550-5162\3;</div> <div> </div> <div> </div> <div>charset RAG1codonPos1 = 5163-5616\3;</div> <div>charset RAG1codonPos2 = 5164-5617\3;</div> <div>charset RAG1codonPos3 = 5165-5618\3;</div> <div> </div> <div> </div> <div>charset SLC8A1codonPos1 = 5620-6160\3;</div> <div>charset SLC8A1codonPos2 = 5621-6158\3;</div> <div>charset SLC8A1codonPos3 = 5619-6159\3;</div> <div> </div> <div> </div> <div> </div> <div>charset SLC8A3codonPos1 = 6162-6627\3;</div> <div>charset SLC8A3codonPos2 = 6163-6625\3;</div> <div>charset SLC8A3codonPos3 = 6161-6626\3;</div> </div> <p> </p>
Data for the article "Mechanically induced correlated errors on superconducting qubits with relaxation times exceeding 0.4 milliseconds"
<p>Here you will find all the raw data and data processing scripts for the plots presented in the article "Mechanically induced correlated errors on superconducting qubits with relaxation times exceeding 0.4 milliseconds."</p>
Images of article "Sexy ways: the methodical approaches to study plant sex chromosomes"
<p><strong>Figure 1. </strong>Schematic diagram of sex chromosome evolution in dioecious plants. Species are shown according to their level of sex chromosome differentiation and Y chromosome asynapsis. In<em> S. oleracea, A. officinalis</em> and <em>C. papaya</em>, the sex chromosomes are mostly homomorphic with recently formed non-recombining regions (region with suppressed recombination). The non recombining region is largely extended almost to entire chromosomal length in species with heteromorphic sex chromosomes, namely in <em>S. latifolia, R. hastatulus</em> (XY cytotype), <em>R. acetosa, H. lupulus, H. japonicus </em>and<em> M. polymorpha</em>. The position of the centromere, the PAR length and the ratio between X and Y is illustrative. </p> <p><strong>Figure 2.</strong> Laser microdissection as a tool to reduce genome complexity. Sex chromosomes in metaphase are isolated from plant cells (mostly pollen mother cells or root tips) and subsequently spread on a special microscopic slide covered with the membrane. After microdissection, chromosomes are transferred into a tube and processed to other applications. In case of chromosome sorting, the chromosome suspension is stained with a DNA-specific dye and introduced into a flow chamber. Within this chamber, individual chromosomes interact with a laser beam, and the scattered light and emitted fluorescence are measured. Through this process, a histogram of fluorescence intensity (known as a flow karyotype) is generated. Sorting is accomplished by breaking the liquid stream into droplets and electrically charging the droplets containing the chromosomes of interest.</p> <p><strong>Figure 3.</strong> Cytogenetic tools to study sex chromosome origin and evolution. Cytogenetics nowadays combine genomic tools to study repeat fraction including TEs and satellites (a), design unique barcodes to distinguish particular chromosome or chromosomal domain using chromosome oligo-painting probe design (b), and bioinformatic tools to dissect single chromosomes or genome parts (c). The combination of above methods helps to understand sex chromosome evolution regarding their autosomal origin, chromosomal rearrangements, and Y(W) chromosome differentiation. Arrows represent evolutionary steps during sex chromosome divergence (d). The sex chromosome barcoding allows understanding of meiotic pairing which in turn supports chromosomal fusions and inversion/translocations. To chromosomes belong to species with references, from the top to the bottom as follows: <em>S. latifolia </em>Ogre retroelement (Kubat et al., 2014), <em>R. hastatulus</em> XY cytotype satellite Cl135 (Sacchi et al., 2023, Preprint), <em>S. latifolia</em> PAR oligo-painting probe with the subtelomeric satellite X43.1 and centromeric satellite STAR-C (Bačovský et al., 2020), and the same DNA probes on chromosomes in metaphase I in <em>S. latifolia </em>(Bernasconi et al., 2009; Bačovský et al., 2022). </p> <p><strong>Figure 4.</strong> Methodical strategies to assess the function of sex chromosomes in plants. Experimental assays with polyploids (alternatively aneuploids) represent the classical way to determine the role of individual sex chromosomes (a). These assays with plants of various ploidy levels were usually supported by analyses of deletion lines (plants carrying short-chromosomal <br>deletions or microdeletions) (b) that allowed researchers to identify sex-linked regions involved in sex determination and floral development. Modern assays using reverse genetics, such as CRISPR/Cas9, virus-induced gene silencing (VIGS) or peptide treatment of shoot apical meristem (c) provide direct evidence of the gene function and its contribution to the development <br>of reproductive organs. Parasite infected (d) or chemically induced (e) hermaphrodites from either female or male individuals, e.g. in <em>Silene</em> or kaki, let to the identification of key mechanisms and genes that regulate sexual phenotypes, and to understand the regulatory networks leading to separate sexes. </p>
Dataset for article: Pro-cognitive effects of dual tacrine derivatives acting as cholinesterase inhibitors and NMDA receptor antagonists
<p>Figure 1. Chemical structures of tacrine (<strong>a</strong>) and its derivatives created by introducing substituents on the aromatic core and/or altering the size of the cycloalkyl moiety attached to the aromatic region: 7-MEOTA (<strong>b</strong>), K1578 (7-chloro-1<em>H</em>,2<em>H</em>,3<em>H</em>-cyclopenta[<em>b</em>]quinolin-9-amine; <strong>c</strong>), K1592 (1-chloro-6<em>H</em>,7<em>H</em>,8<em>H</em>,9<em>H</em>,10<em>H</em>-cyclohepta[<em>b</em>]quinolin-11-amine; <strong>d</strong>), K1594 (6-methyl-1,2,3,4-tetrahydroacridin-9-amine; <strong>e</strong>), and K1599 (7-methoxy-1<em>H</em>,2<em>H</em>,3<em>H</em>-cyclopenta[<em>b</em>]quinolin-9-amine; <strong>f</strong>). Compounds in this study were used in the form of hydrochloride salts.</p> <p>Figure_2_values. Test results. Morris water maze: scopolamine-induced model of cognitive deficit in the acquisition and reversal phases. The graphs show the effects of K1578 (<strong>a</strong>), K1592 (<strong>b</strong>), K1594 (<strong>c</strong>), and K1599 (<strong>d</strong>) on escape latency during the acquisition phase, where none of the compounds ameliorated the deficit of spatial learning. The remaining graphs display the effects of K1578 (<strong>e</strong>), K1592 (<strong>f</strong>), K1594 (<strong>g</strong>), and K1599 (<strong>h</strong>) in the reversal phase, where K1578 (1 mg/kg) and K1599 (at both doses), and marginally K1592 (1 mg/kg; see in the text), mitigated the scopolamine-induced deficit of reversal learning. VEH – vehicle, the numbers in brackets denote the dose applied (mg/kg). Data are presented as the mean + SEM, * vs. VEH, * p < 0.05, ** p < 0.01, *** p < 0.001. <em>n</em> = 6–9 animals per group. Statistical significance was determined using two-way repeated measures ANOVA (a–d) or ANOVA (e, f, h) followed by Dunnett’s multiple comparisons tests.</p> <p>Figure-3_values. Test results. Morris water maze: MK-801-induced model of cognitive deficit in the acquisition phase. The graphs illustrate the effects of the compounds K1578 (<strong>a</strong>), K1592 (<strong>b</strong>), K1594 (<strong>c</strong>), and K1599 (<strong>d</strong>) on escape latency. Only K1599 (1 mg/kg) ameliorated the MK-801-induced deficit of spatial learning. VEH – vehicle, the numbers in brackets denote the dose (mg/kg). Data are presented as the mean + SEM, * vs. VEH, * p < 0.05, ** p < 0.01. <em>n</em> = 5–7 animals per group. Statistical significance was determined using two-way repeated measures ANOVA followed by Dunnett’s multiple comparisons tests.</p> <p>Figure_4_values. Open field test. The results demonstrate the effects of K1578 (<strong>a</strong>), K1592 (<strong>b</strong>), K1594 (<strong>c</strong>), and K1599 (<strong>d</strong>) on the distance moved by intact and MK-801-treated animals. VEH – vehicle, the numbers in brackets denote the dose (mg/kg). Data are presented as the mean + SEM, * vs. VEH group of the corresponding phenotype, * p < 0.05, ** p < 0.01, **** p < 0.0001. <em>n</em> = 6–14 animals per group. A significant effect of both factors (treatment and phenotype) was determined using two-way ANOVA, followed by Dunnett’s multiple comparisons tests.</p> <p>Figure-5_values. Acetylcholinesterase activity. The results document the effect of the compounds (1 mg/kg ip) on AChE activity in the hippocampus (<strong>a</strong>), prefrontal cortex (<strong>b</strong>), striatum (<strong>c</strong>), and whole brain sample (<strong>d</strong>). K1578 and K1599 decreased AChE activity in the striatum. VEH – vehicle. Data are presented as the median with minimum to maximum range, * vs. VEH, *** p < 0.001, **** p < 0.0001. VEH samples AChE enzyme activities reached the following absolute values (a) 15.19 ± 3.09 U/mg protein, (b) 9.810 ± 1.54 U/mg protein, (c) 26.05 ± 3.27 U/mg protein, and (d) 27.38 ± 3.36 U/mg protein. Significance was determined by ANOVA (graphs c, d), followed by Dunnett’s multiple comparisons tests.</p> <p>Figure_6_values. Electrophysiology: Inhibition of GluN1/GluN2A receptors by K1599. Representative whole-cell patch-clamp recordings measured from HEK293 cells expressing the GluN1/GluN2A receptors held at a membrane voltage of −80 mV and +60 mV; 30 μM K1599 was applied as indicated. Results summarizing the relative inhibition induced by 30 µM K1599, measured at the indicated membrane potentials. <em>n</em> ≥ 5 cells per each condition.</p> <p>Table_1. The rats were pseudo-randomly assigned to one of the 18 treatment groups listed in. Each group received two injections: one containing the study compound and another containing either MK-801 or scopolamine, as indicated by the group name. The vehicle group (VEH) received the DMSO vehicle (2.5 mL/kg) and saline. The “scopolamine” and “MK-801” groups received scopolamine or MK-801, respectively, along with the DMSO vehicle (2.5 mL/kg).</p> <p>Table 2. Treatment groups and <em>n</em> in biochemical experiments - AChE activity assay.</p>
2023 Utrecht University Open Access Monitor (peer reviewed journal articles)
<p>Results of the OA monitor of Utrecht University (UU) and University Medical Center Utrecht(UMCU) for the year 2023. It lists the open access availability of all peer reviewed journal articles registered in the CRIS (Pure) of Utrecht University and/or University Medical Center Utrecht. </p>
Supplementary data for the article "Spin reorientation in premartensite and austenite Ni-Mn-Ga".
<p>Supplementary data for the article “Spin reorientation in premartensite and austenite Ni-Mn-Ga” by Alexej Perevertov, Ross H. Colman and Oleg Heczko.</p> <p>Dataset - worksheet, M(H) loop at T = 252K. Columns - time (seconds); Field (A/m), Magnetic polarization, J(T); dJ/dt (T/s); dH/dt (A/(m*s))</p> <p>Supplementary video 1. The DS curves and J(H) hysteresis loops were displayed on the graphs in the post-processing LabView graphs for every temperature for 0.1sec and the screen recording was done using the VLC player/recorder (the capture device – desktop).</p> <p>Supplementary Video 2 - we have cut a 6x0.15mm disk, perpendicular to the long side of our sample with the face of the disk in the [100] – [110] plane. The disk was placed in a constant field of 50mT. On the heating cycle, immediately after martensitic transformation the disk [100] axis is parallel to the field. Close to the premartensitic transformation the disk spontaneously rotates by 45º, with the field then parallel to the [110] direction. With further heating, close to the room temperature, it rotates back to [100].</p>
Participant survey for the article: More than Formulas - Integrity, Communication, Computing and Reproducibility in Statistics Education
<p>The artcile More than Formulas - Integrity, Communication, Computing and Reproducibility in Statistics Education concerns the introduction of a new course format in the Master Program in Biostatistics at the University of Zurich. This data set contains the results fo a survey among the participants in this new course.</p> <p>Sepcifically it contains the answers of 22 participants to the following questions:</p> <p>1) Did you use the following concepts or tools since you took STA472? <br>Good practice for...</p> <p>... spreadsheets<br>... file and folder organization<br>... version control<br>... dynamic reporting<br>... LaTeX<br>... presentation slide design <br>... oral presentations<br>... designing graphs<br>... designing tables<br>... structure for manuscript<br>... logic of a paragraph<br>... writing style<br>... writing R functions<br>... using unit tests<br>... setting up simulations<br>... code styling<br>... writing vectorized code<br>... writing parallelized code<br>... containerizing code</p> <p>Answers are in the scale: never since, rarely, sometimes, often, frequently, I do not know</p> <p>2) If you used the above concepts at least rarely, did the training of STA472 help you?</p> <p>Good paractice for...</p> <p>... spreadsheets<br>... file and folder organization<br>... version control<br>... dynamic reporting<br>... LaTeX<br>... presentation slide design <br>... oral presentations<br>... designing graphs<br>... designing tables<br>... structure for manuscript<br>... logic of a paragraph<br>... writing style<br>... writing R functions<br>... using unit tests<br>... setting up simulations<br>... code styling<br>... writing vectorized code<br>... writing parallelized code<br>... containerizing code</p> <p>Answers are in the scale: Not really Somewhat Definitively I do not know I do not use this concept</p>
Two-time correlation function based on speckle patterns from x-ray photon correlation spectroscopy associated with "Intermittent cluster dynamics and temporal fractional diffusion in a bulk metallic glass" (scientific article published in Nature Communications, 2024)
<p>This dataset consists of contrast data, i.e., the two-time correlation function, based on speckle patterns measured at the at the 8ID-E beamline of the Advanced Photon Source at Argonne National Laboratory.</p> <p>Experimental details are stated in the paper specified under "related work" and in the accompanying supplementary information.</p> <p>You are welcome to use this dataset in compliance with the CC BY 4.0 licence assigned to this dataset.</p> <p>Any questions regarding the data can be addressed to birte.riechers@bam.de who would also appreciate a note if you find the data useful.</p> <p>____________________________________________________________________</p> <p>The data consists of 32 text files in total, which correspond to the main and lower panel Figure 2 of the main publication. </p> <p>30 of these text files are contrast data, which are named "contrast_DT250s_nn.text" wiith "nn" as the identifier of consecutive data sets going from 1 to 30. Each data set consists of p rows and q columns, DT250s denotes the time resolution of data points, which is 250 s along both row and column values.</p> <p>The data set called "Time_Contrast_1to30s.txt" states the start time in seconds of the first data point of each of the thirty contrast data set.</p> <p>The data set called "ScatteredIntensity.txt" states the scattered intensity at full time resolution, i.e. 2.5 s.</p> <p>The files are plain text files with the data points separated by "space" along rows and "new line" along columns.</p>
Geo-referencing of journal articles and platform design for spatial query capabilities
<p>We analyzed the corpus of three geoscientific journals to investigate if there are enough locational references in research articles to apply a geographical search method, on the example of New Zealand. We counted place name occurrences that match records from the official Land Information New Zealand (LINZ) gazetteer in the titles, abstracts and full texts of freely available papers of the New Zealand Journal of Geology and Geophysics, the New Zealand Journal of Marine and Freshwater Research, and the Journal of Hydrology, New Zealand, for the years 1958 to 2015. We generated ISO standard compliant metadata records for each article including the spatial references and make them available in a public catalogue service.</p> <ol> <li><em>articles_georef_count_data.xlsx</em>: The counts and evaluation tracking of the place name occurrences in the journal articles.</li> <li><em>summary_final.xlsx</em>: Summary statistics for evaluation based on the counts data.</li> <li><em>article_template.xml</em>: XML template for ISO 19139 compliant metadata record filled for each article.</li> <li><em>full_article.xm</em>l: Exemplary fully filled ISO 19139 compliant metadata record.<br> </li> </ol>
Open Access levels of Dutch universities' output 2016-2017 (articles & reviews): green, gold, hybrid and bronze - May 2018
<p>Using Web of Science and Unpaywall data, we here provide an update of Open Access (OA) levels of Dutch universities, for 2016 and 2017.</p> <p>Our previous analysis (<a href="http://doi.org/10.5281/zenodo.1133759">10.5281/zenodo.1133759</a> and <a href="http://doi.org/10.7287/peerj.preprints.3520v1">10.7287/peerj.preprints.3520v1</a>) looked at OA classification as included in Web of Science (gold and green OA, based on Unpaywall data), and supplemented that with a breakdown of gold OA into pure gold, hybrid and bronze, taken from Unpaywall data (formerly OADOI) directly. Here, we improve on this by running all DOIs retrieved from WoS through Unpaywall data (using their web interface that allows batch checking of up to 10,000 DOIs at a time). Unlike WoS, Unpaywall data itself includes author-submitted versions in their green OA classification, resulting in more complete green OA levels. </p> <p>In addition, since our initial analysis of December 2017, Unpaywall data has considerably expanded its coverage of institutional repositories (IRs) (see <a href="https://unpaywall.org/sources">https://unpaywall.org/sources</a>). This now includes coverage of the IRs from all Dutch universities. </p> <p>Taken together, the current data show higher levels of green open access, including author-submitted versions, compared to our previous analysis. </p> <p>In this update, we include output (articles and reviews) from 2016 and 2017 for all 14 universities in the Netherlands. </p> <p>The following categories are distinguished (description taken from Piwowar at al., 2018, doi: <a href="https://doi.org/10.7717/peerj.4375">10.7717/peerj.4375</a>)</p> <ul> <li><strong>Pure gold</strong>: Published in an open-access journal (as defined by the DOAJ)</li> <li><strong>Hybrid</strong>: Free under an open license in a toll-access journal</li> <li><strong>Bronze</strong>: Free to read on the publisher page, but without a license</li> <li><strong>Green: </strong>Available from an institutional or disciplinary repository (including PubMedCentral)</li> </ul> <p>Data for Dutch universities were collected from Web of Science using the organization-enhanced field. Only articles and reviews were included. DOIs were extracted from the Web of Science export, run through the Unpaywall data <a href="https://unpaywall.org/products/simple-query-tool">Simple Query Tool</a>. From the resulting data from Unpaywall, OA classification was done using a simple formula in Excel (to be replaced by an R script in a future update). The Excel template used is included in this dataset, as is the OADOI API output for each Dutch university's article subset, and the lists of DOIs derived from Web of Science. The dataset also includes summarized data and three charts generated from these data, showing levels of different types of OA for 2016, 2017 and the two years compared. </p> <p>----------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p>
Simulation data files of the article: "The dimming of RW Auriga. Is dust accretion preceding an outburst?"
<p>We make available here the simulation output files used in the paper "The dimming of RW Auriga. Is dust accretion preceding an outburst?" by Gárate et al. (2019). The simulation shows the gas and dust evolution of a protoplanetry disk in the event of a dead zone reactivation.</p> <p>The simulations were performed using DustPy (Stammler & Birnstiel, in prep.) to solve the advection of gas and dust, along with the coagulation and fragmentation of multiple dust species.</p> <p>Each folder corresponds to one of the simulation sets presented in the article, with the "CORE" identifier corresponding to the fiducial parameters. Each datafile corresponds to one snapshot of a simulation, with the data0000.hdf5 being the disk conditions at the moment of the dead zone reactivation.</p> <p>The simulation data is saved in hdf5 format. We include the jupyter notebook as a guide of how to read and plot the simulation files. Additional comments about each simulation are included in the notebook.</p>
DOI-to-DOI citations of articles '10.1016/j.websem.2012.08.001' and '10.1016/j.websem.2017.06.001'
<p>This dataset contains the citations of two articles I've coauthored, i.e. '10.1016/j.websem.2012.08.001' and '10.1016/j.websem.2017.06.001' published on Elsevier's Web Semantics. The citation data are compliant with the CSV format for CROCI, http://opencitations.net/index/croci.</p>
Sentiment analysis of tech media articles using VADER package and co-occurrence analysis
<p><strong>Sentiment analysis of tech media articles using VADER package and co-occurrence analysis</strong></p> <p><strong>Sources</strong>: Above 140k articles (01.2016-03.2019):</p> <ul> <li>Gigaom 0.5%</li> <li>Euractiv 0.9%</li> <li>The Conversation 1.3%</li> <li>Politico Europe 1.3%</li> <li>IEEE Spectrum 1.8%</li> <li>Techforge 4.3%</li> <li>Fastcompany 4.5%</li> <li>The Guardian (Tech) 9.2%</li> <li>Arstechnica 10.0%</li> <li>Reuters 11%</li> <li>Gizmodo 17.5%</li> <li>ZDNet 18.3%</li> <li>The Register 19.5%</li> </ul> <p><strong>Methodology</strong></p> <p>The sentiment analysis has been prepared using VADER*, an open-source lexicon and rule-based sentiment analysis tool. VADER is specifically designed for social media analysis, but can be also applied for other text sources. The sentiment lexicon was compiled using various sources (other sentiment data sets, Twitter etc.) and was validated by human input. The advantage of VADER is that the rule-based engine includes word-order sensitive relations and degree modifiers.</p> <p>As VADER is more robust in the case of shorter social media texts, the analysed articles have been divided into paragraphs. The analysis have been carried out for the social issues presented in the co-occurrence exercise.</p> <p>The process included the following main steps:</p> <ul> <li>The 100 most frequently co-occurring terms are identified for every social issue (using the co-occurrence methodology)</li> <li>The articles containing the given social issue and co-occurring term are identified</li> <li>The identified articles are divided into paragraphs</li> <li>Social issue and co-occurring words are removed from the paragraph</li> <li>The VADER sentiment analysis is carried out for every identified and modified paragraph</li> <li>The average for the given word pair is calculated for the final result</li> </ul> <p>Therefore, the procedure has been repeated for 100 words for all identified social issues.</p> <p>The sentiment analysis resulted in a compound score for every paragraph. The score is calculated from the sum of the valence scores of each word in the paragraph, and normalised between the values -1 (most extreme negative) and +1 (most extreme positive). Finally, the average is calculated from the paragraph results. Removal of terms is meant to exclude sentiment of the co-occurring word itself, because the word may be misleading, e.g. when some technologies or companies attempt to solve a negative issue. The neighbourhood's scores would be positive, but the negative term would bring the paragraph's score down.</p> <p>The presented tables include the most extreme co-occurring terms for the analysed social issue. The examples are chosen from the list of words with 30 most positive and 30 most negative sentiment. The presented graphs show the evolution of sentiments for social issues. The analysed paragraphs are selected the following way:</p> <ul> <li>The articles containing the given social issue are identified</li> <li>The paragraphs containing the social issue are selected for sentiment analysis</li> </ul> <p>*Hutto, C.J. & Gilbert, E.E. (2014). VADER: A Parsimonious Rule-based Model for Sentiment Analysis of Social Media Text. Eighth International Conference on Weblogs and Social Media (ICWSM-14). Ann Arbor, MI, June 2014.</p> <p> </p> <p><strong>Files</strong></p> <p>sentiments_mod11.csv sentiment score based on chosen unigrams</p> <p>sentiments_mod22.csv sentiment score based on chosen bigrams</p> <p>sentiments_cooc_mod11.csv, sentiments_cooc_mod12.csv, sentiments_cooc_mod21.csv, sentiments_cooc_mod22.csv combinations of co-occurrences: unigrams-unigrams, unigrams-bigrams, bigrams-unigrams, bigrams-bigrams</p> <p> </p>
Supporting Material for article "The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences"
<p>This data set is the Supporting Material referred to in the Supplementary Data for the article "The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences" (Drysdale, et al.) submitted for publication in April 2019.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.