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Fig. 2 in A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes
Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, MBM12; 2, NMD 3Y-3-3; 3, HMF2471; 4, Kef2; 5, Eg81205; 6, EgN2201; 7, CF4; 8, CF7; 9, CH2-1; 10, MB2M14.
Fig. 1 in A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes
Fig. 1. Neighbor-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationships between the strains isolated in this study and their relatives of the class Bacilli. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Filled circles indicate the nodes were also recovered in maximum-likelihood tree. Bootstrap values (>70%) are shown above nodes. Scale bar, 0.02 substitutions per nucleotide.
Fig. 3 in A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Rhodobacterales in the class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.01 changes per nucleotide.
Fig. 2 in A report of 38 unrecorded bacterial species in Korea, belonging to the phylum Actinobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the phylum Actinobacteria. Bootstrap values (>70%) are shown above nodes. Filled circles indicate the nodes recovered by three other treeing methods including maximum likelihood, maximum parsimony, and neighbor joining. Bar, 0.01 substitutions per nucleotide position. Suborder: A, Micromonosporineae; B, Frankineae; C, Propionibacterineae.
Fig. 2 in A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Rhizobiales in the class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.01 changes per nucleotide.
Fig. 4 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Burkholderiales, Neisseriales, and Rhodocyclales in the class Betaproteobacteria. Parvularcula oceanus JLT2013T (JPHU01000026) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 3 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Rhodobacterales, Rhodospirillales, and Sphingomonadales in the class Alphaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, LPB0183; 2, LPB0211; 3, 17J44-22; 4, 17J27-16; 5, KYW1385; 6, BMW10; 7, IMCC34164; 8, IMCC34184; 9, IMCC34185; 10, IMCC34207; 11, IMCC34233; 12, GH4-12; 13, GH1-7; 14, GH1-10; 15, GH2-6; 16, Ibu_S_3; 17, MMS17- GJ036; 18, MMS17-SY214; 19, Gsoil 1028; 20, Gsoil 1111; 21, Gsoil318-1; 22, Gsoil 824; 23, HMF7612; 24, HMF7644; 25, HMF7868; 26, HMF8042; 27, HMF8046; 28, HMF8205; 29, HMF8467; 30, HMF8483; 31, HMF8486; 32, S-1; 33, F-mm3; 34, StC2; 35, BR3409; 36, JMn9; 37, WD42; 38, kw_8; 39, MMS17-GJ039; 40, Gsoil 096; 41, HMF7346; 42, HMF7693; 43, HMF7887; 44, HMF4721; 45, LPB0172; 46, LPB0305.
Fig. 2 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Parvularculales and Rhizobiales in the class Alphaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 6 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 6. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Sphingomonadales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 4 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives in the order Rhodobacterales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 3 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives in the order Rhizobiales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 2 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives in the order Caulobacterales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 5 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Rhodospirillales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 2 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 2. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Sphingomonadales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 3. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales in the class Alphaproteobacteria. Bootstrap values greater than 70% are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Caulobacterales and Rhizobiales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Bar, 0.02 substitutions per nucleotide position. The strain Escherichia coli ATCC 11775T is used as an outgroup.
Fig. 4 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhodospirillales in the class Alphaproteobacteria. Bootstrap values>70% are shown in the neighbor-joining tree. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, EgM1111; 2, IMCC12376; 3, 63DPR2; 4, FW2; 5, WW59; 6, HME9618; 7, WS23; 8, 01SU6; 9, SDN0101; 10, WM24; 11, M41; 12, 01SU7P; 13, R111; 14, LR3; 15, MT2F 6; 16, W533; 17, 7C17; 18, KTCe5; 19, LB3; 20, PMXR; 21, WM92; 22, MW2F51; 23, 61DPR27; 24, M49; 25, HME9619; 26, BSW2; 27, IMCC12390; 28, SDM0103; 29, BS16; 30, LR4; 31, IMCC12425; 32, BM15; 33, EgM3207; 34, KHS03; 35, KHS07; 36, SDM0205; 37, HME9615; 38, IMCC12392; 39, WW106.
Fig. 3 in A report of 156 unrecorded bacterial species of Republic of Korea belonging to the phyla Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota isolated in 2022
Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships between 28 strains isolated in this study and their relatives in the phylum Actinomycetota. Bacillus subtilis IAM 12118T (GenBank accession no. NR_112116.2) was used as an outgroup. Only bootstrap values greater than 50% are shown at branching points. Bar, 0.01 substitutions per nucleotide position.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.