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7,378 results for “case”
Dataset for KIOS CoE Sandboxing use-case SUC5 corresponding to cyber attacks affecting the control of active distribution grids and microgrids
<p>These datasets <span> illustrate two primary scenarios (S1-S2) concerning the operation of the sandboxing use case SUC5 corresponding to cyber attacks affecting the control of active distribution grids and microgrids. These scenarios examine the functioning of an active distribution grid and microgrid system, along with the effects of certain cyber-attacks in this context. The demonstration of each scenario is detailed in selected time-series plots which were described in detail in Section </span><span>1.3 of the supporting document of SUC5 (</span><span>accompanied by an in-depth analysis of the processes and an impact assessment). A</span><span>ll data captured during the execution of each scenario was collected, including electrical measurements, reference and set-point signals. </span></p> <ul> <li><span><span><strong>SUC5/S1 datasets/<span>MITM with FDI</span> cyber-attack</strong><span><strong> in an active distribution grid (grid-connected)</strong>: This dataset is related to the operation of the fifth sandboxing use case (SUC5) of the KIOS CoE Sandboxing environment for cyber-physical analysis of EPES, which examines the operation of an active distribution grid, when the distribution grid is interconnected with the main grid. Specifically, this dataset corresponds to the first scenario (S1) of SUC5, where a MITM with FDI cyber-attack is virtually conducted within the sandboxing environment to introduce an offset deviation to the active power set-point allocated to BSS inverter controller from the secondary controller. More details about the scenario related to this dataset can be found in Section 1.3 of the supporting document. The dataset includes electrical measurements of the active power generated by the BSS inverter (connected at bus 2), and the active power set-point before and after the attack. The dataset is provided in the form of time-series measurements available as MATLAB (.mat) and CSV (.csv) files. The measurements were recorded from the real time simulator using the “OpWrite” block of the RT-LAB, with 1-millisecond time resolution. <br></span></span></span></li> <li><span><span><span><strong>SUC5/S2 datasets/MITM with FDI cyber-attack in a microgrid (islanding mode)</strong>: This dataset is related to the operation of the fifth sandboxing use case (SUC5) which investigates the operation of a microgrid during islanding mode. This dataset corresponds to the second scenario (S2) of SUC5, where a MITM with FDI cyber-attack is virtually conducted within the sandboxing environment to introduce an offset deviation to the frequency reference signal, exchanged between the higher-level controller (tertiary controller) and the microgrid local controller (secondary V-f controller). More details about the scenario related to this dataset can be found in Section 1.3 of this supporting document. The dataset includes electrical measurements of the microgrid frequency, the reference frequency value generated by the tertiary controller, as well as the attacked frequency reference value. The dataset is provided in the form of time-series measurements available as MATLAB (.mat) and CSV (.csv) files. The measurements were recorded from the real time simulator using the “OpWrite” block of the RT-LAB, with 1-millisecond time resolution. <br></span></span></span></li> </ul>
Single-cell RNA-seq of breast cancer infiltrating T cells (case 1)
<p>Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 2) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads. Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.</p> <p>This dataset contains the raw .bcl files.</p>
Single-cell RNA-seq of breast cancer infiltrating T cells (case 2)
<p>Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 1) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads (this sample was divided into two channels). Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.</p> <p>This dataset contains the raw .bcl files.</p>
Applications and raw data for SciPipe genomics and transcriptomics case studies
<p>Accompanying applications and raw data for the genomics and transcriptomics (RNA-Seq) case studies for SciPipe [1] available at https://github.com/pharmbio/scipipe-demo </p> <p>[1] http://scipipe.org</p>
Continuous monitoring of patient mobility for 18 months using inertial sensors following traumatic knee injury: a case study
<p><strong>This repository contains raw data relating to: </strong>Continuous monitoring of patient mobility for 18 months using inertial sensors following traumatic knee injury: a case study Mueller A., Hoefling H., Nuritdinow T., et al. DOI: 10.1159/000490919</p> <p><strong>Metadata and processed data derived from the raw data deposited here is available here:</strong> https://github.com/Novartis/mueller_et_al_2018</p> <p><strong>Article Abstract</strong></p> <p>Continuous patient activity monitoring during rehabilitation, enabled by digital technologies, will allow the objective capture of real-world mobility and aligning treatment to each individual’s recovery trajectory in real time. To explore the feasibility and added value of such approaches, we present a case study of a 36-year-old male participant monitored continuously for activity levels and gait parameters using a waist-worn inertial sensor following a tibial plateau fracture on the right side, sustained as a result of a high-energy trauma during a sporting accident. During rehabilitation, data were collected for a period of 553 days, with > 80% daytime compliance, until the participant returned to near full mobility. The participant completed a daily diary with the annotation of major events (falls, near falls, cycling periods, or physiotherapy sessions) and key dates in the patient’s recovery, including medical interventions, transitioning off crutches, and returning to work. We demonstrate the feasibility of collecting, storing, and mining of continuous digital mobility data and show that such data can detect changes in mobility and provide insights into long-term rehabilitation. We make both raw data and annotations available as a resource with the aspiration that further methods and insights will be built on this initial exploration of added value and continue to demonstrate that continuous monitoring can be deployed to aid rehabilitation.</p>
Does Unit-Tested Code Crash? A Case Study of Eclipse
<ul> <li>The "jacoco.xml" file contains the code coverage of Eclipse Project generated by JaCoCo</li> <li>The "incidents (stack traces).zip" file contains the stacktraces files (in JSON format) with the specific popular release and product that we used for our research.</li> <li>All The Eclipse stacktraces can be downloaded <a href="http://software-data.org/datasets/aeri-stacktraces/downloads/incidents_full.tar.bz2">here.</a></li> <li>The "output.csv" contains the data that we produced after combining JaCoCo Report and stacktraces.</li> </ul>
Case report: Papillary squamous cell carcinoma of the penis
<p><strong>Case history</strong></p> <p>62-year-old male with a verruciform tumor located in distal penis and involving glans.</p> <p> </p> <p><strong>Histologic findings</strong></p> <p>The microphotographs show an exophytic verruciform tumor mass characterized by papillomatosis, slight to moderate acanthosis, and hyperkeratosis. Papillae are complex, some with blunt and others with spiky tips. Fibrovascular are present in most but not all papillae and are irregularly shaped. Tumor base is jagged and there is a prominent stromal reaction. Neoplastic cells in papillae and infiltrative tumor nests are well to moderately differentiated (grades 1-2) and no koilocytic atypia is observed.</p> <p> </p> <p><strong>Discussion</strong></p> <p>Verruciform penile tumors comprise about one-quarter of all penile squamous cell carcinomas (SCC) and include papillary, verrucous, and warty carcinomas, as well as giant condylomas and carcinoma cuniculatum. As a group, verruciform carcinomas are characterized by the presence of papillomatosis, acanthosis, and hyperkeratosis. However, there are distinctive morphological features for each one of these tumors. For papillary SCC, the most distinguishing feature is the presence of complex papillae with irregularly shaped fibrovascular cores. Papillary carcinomas tend to be polymorphic with some areas exhibiting condylomatous papillae and others with a more verrucous-like aspect. Fibrovascular cores are readily found in the former and are scant or even absent in the latter.</p> <p>Another important clue in the differential diagnosis with other verruciform tumors is the presence of a jagged tumor-stroma interface. In verrucous and cuniculatum carcinomas the tumor front is broad-based. The absence of koilocytosis allows the distinction from warty carcinomas and giant condylomas, tumors in which koilocytes are conspicuous. HPV status may be helpful in problematic cases, since in papillary carcinomas the HPV detection rate is very low or even null. Immunohistochemistry for p16<sup>INK4a</sup> is also useful since the vast majority of papillary carcinomas do not overexpress this protein. In order for a penile tumor to be considered as p16<sup>INK4a</sup> positive all neoplastic cells should be stained. Cases like this one in which some cells stain and others do not should be regarded as negative for p16<sup>INK4a</sup> overexpression.</p> <p>The inguinal metastatic rate of penile papillary carcinomas is very low and the prognosis is good. Less than one-fifth of all patients present inguinal involvement and even in these cases the mortality rate is low. Even when tumors invade penile erectile tissues prognosis is good as long as no high-grade areas (observed in a minority of the patients) are identified.</p> <p>Clinically patients should be managed using risk-group stratification systems and taking into account histological grade, anatomical level of maximum tumor infiltration, and the presence of vascular and perineural invasion. </p> <p> </p> <p><strong>References</strong></p> <p><a href="https://www.ncbi.nlm.nih.gov/pubmed/20061934">Chaux et al. Am J Surg Pathol. 2010 34(2): 223-30</a></p> <p><a href="https://www.ncbi.nlm.nih.gov/pubmed/22641955">Chaux & Cubilla. Semin Diagn Pathol. 2012 29(2): 72-82</a></p> <p><a href="https://www.ncbi.nlm.nih.gov/pubmed/22641955">Chaux & Cubilla. Semin Diagn Pathol. 2012 29(2): 67-71</a></p>
Use Case 1 Data set
<p>Effect of nanofiller on the stiffness of a Carbon Fiber Reinforced Thermoplastic (CFRP).<br> The effect of different volume fractions (0%, 2%, 5% and 12%) of Multiwall Carbon Nanotubes (MWCNT) are computed for PEEK reinforced Carbon Fiber UD. Two different Carbon Fiber(CF) volume fractions are considered (40% and 60%). </p>
Data from: Andriollo T., Gillet F., Michaux J.R., Ruedi M. (2019). The menu varies with metabarcoding practices: A case study with the bat Plecotus auritus. PLoS ONE 14(7)
<p><strong>Supporting data for: </strong>Andriollo T., Gillet F., Michaux J.R., Ruedi M. (2019). The menu varies with metabarcoding practices: a case study with the bat <em>Plecotus auritus</em>. PLoS ONE 14(7): e0219135. https://doi.org/10.1371/journal.pone.0219135</p> <p>Raw DNA sequences of prey of <em>Plecotus auritus</em>. Sampling information separated by semicolums as folows:</p> <p>>Sequence number; Colony; Date; Sample name; Dataset; Is the sequence attributable to the diet or not (Diet); Read numbers (Size); DNA sequence</p>
Demonstration case study reports
<p>As part of the PLAID project an in-depth assessments of the processes involved in achieving efficient and effective on-farm demonstration activities was investigated. 24 year-long studies of demonstration events and activities were selected and followed 2 case studies in each partner country were selected, which followed demonstration from initial commissioning through to impact assessment. The specific objectives were</p> <ul> <li>Improved understanding of the key elements that contribute to successful and effective demonstration activities on commercial farms, looking specifically at: commissioning and financing, topic selection, accessibility, mediation techniques, and embeddedness. Gender will be specifically addressed.</li> <li>Improved understanding of the effectiveness of demonstration activities in terms of learning by participants (at the individual level and the network level: what is learned, by whom, how and why?) and the subsequent impact (i.e. actual implementation of what farmers have learned on their own farm, new network development, innovation inception).</li> <li>Assess the role of demonstration within the wider AKIS systems and what the impact of demonstration is on learning and technology adoption</li> <li>Develop insights into critical success factors, best (and poor) practices, and indicators for effective and successful demonstration activities.</li> </ul>
Case Data Sindh High Court 2011 v1.0
<div> <div>The case-wise data is extracted during Summer 2023 from the [Sindh High Court website](htts://shc.gov.pk). The dataset contains information on cases filed in the Sindh High Court in 2011. It includes details on case type, case status, nature of cases, and disposal of cases.</div> <div> </div> <div>Visit https://darlab-pakistan.github.io/pakistan-justice-data/ for a detailed description of data.</div> </div>
Data For Scalco et al. Clinicopathological correlates of quantitative Amyloid-B Pathology in the Temporal Cortex: Machine learning analysis of 131 cases from an ADRC
<p>Dataset containing 131 de-identified whole slide images (WSIs) with a respective data dictionary. </p> <p><strong>Paper</strong>: Scalco, R., Oliveira, L.C., Lai, Z. et al. Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases. acta neuropathol commun 12, 134 (2024). https://doi.org/10.1186/s40478-024-01827-7</p> <p><strong>Details</strong>: A total of 131 .svs. WSIs, de-identified using svs-deidentifier v 0.9.1-beta (https://github.com/pearcetm/svs-deidentifier/releases). Dataset is uploaded in batches due to Zenodo data upload limitations.</p> <p><strong>Slide curation/preparation</strong>: All samples were retrieved from archives of the University of California, Davis Alzheimer’s Disease Center Brain Bank (<a href="https://www.ucdmc.ucdavis.edu/alzheimers/">https://www.ucdmc.ucdavis.edu/alzheimers/</a>). Archival samples analyzed in this study were 5 μm formalin fixed, paraffin embedded sections of the superior and middle temporal gyrus from human brain. The tissue had been previously stained with an amyloid-β antibody (4G8, recognizing residues 17-24, BioLegend, formerly Covance) that were first pretreated with formic acid to rid samples of endogenous protein. All slides were digitized using an Aperio AT2 between 20x and 40x magnification.</p> <p><strong>Code:</strong> Please refer to <a href="https://github.com/ucdrubinet/BrainSec">https://github.com/ucdrubinet/BrainSec</a> and <a href="https://github.com/keiserlab/plaquebox-paper">https://github.com/keiserlab/plaquebox-paper</a></p>
ARTICLE DATASET - ANTHROPOGENIC MICROPARTICLES ACCUMULATION IN SMALL-BODIED SEAGRASS MEADOWS: THE CASE OF TROPICAL ESTUARINE SPECIES IN BRAZIL
<p>This dataset with the data analysis script refers to the publication <a href="https://www.sciencedirect.com/science/article/abs/pii/S0025326X24007768?via%3Dihub"><strong>https://doi.org/10.1016/j.marpolbul.2024.116799</strong></a>.</p> <p>The dataset consists of a spreadsheet containing 9 tabs with survey data described below and their respective captions, found in the first line of each tab.</p> <p>The script for statistical analysis in the R language contains descriptive and statistical analyses, in addition to the functions for creating the graphs displayed in the article.</p> <p><strong>Description of the spreadsheet dataset tabs --------------------------------------------------------------------------------</strong></p> <ol> <li>description - Contains general information about the article</li> <li>meadows - Contains properties related to the characteristics of the multispecific grassland.</li> <li>ap_samples - Contains properties related to the abundances of anthropogenic microparticles, as to classifications by shape, size (mm) and color in units, kg and frequency of occurrence.</li> <li>ap_categories - Contains raw data related to the classifications of anthropogenic microparticles, in terms of shape, size (mm) and color.</li> <li>sediment - Contains raw data related to the classifications of sediment particles.</li> <li>granulometry - Contains properties related to sediment particles in µm, and their classifications by predominance, frequency and kg.</li> <li>shape - Contains raw data related to the classification of the shapes of anthropogenic microparticles in units and kg.</li> <li>size - Contains raw data related to the classification of the sizes of anthropogenic microparticles in units and kg.</li> <li>color - Contains raw data related to the classification of the colors of anthropogenic microparticles in units and kg.</li> </ol>
SPLEEN - High Speed Turbine Cascade – Test Case Database
<p>This is an open-access database of experimental data of the flow in a <strong>high-speed low-pressure turbine cascade</strong>. The data have been collected at the <strong>von Karman Institute for Fluid Dynamics</strong> in the period 2018-2022 within the H2020 Clean Sky 2 project <strong>SPLEEN</strong> – Secondary and Leakage Flow Effects in High-Speed Low-Pressure Turbines, a project in collaboration with Safran Aircraft Engines.</p> <p>This version contains documents that describe the experimental setup, instrumentation, measurement uncertainties, geometries, and database structure.</p> <p>The database contains experimental data of the test campaign conducted on the linear cascade codenamed SPLEEN C1 in the VKI high-speed wind tunnel S1/C.</p> <p>The turbine cascade geometry is representative of designs of high-speed low-pressure turbines for next-generation geared turbofan engines.</p> <p>The measurement datasets describe the <strong>flow through the turbine cascade tested at on- and off-design conditions</strong>, with and without a wake generator located upstream of the cascade, and with and without endwall cavity injection. The database includes measurements of pressure, temperature, flow angles, Mach numbers, pressure loss, unsteady blade and endwall pressure and quasi-shear-stress.</p> <p>The database includes measurement datasets performed on the turbine cascade <strong>WITH a FLAT ENDWALL </strong>(no cavity)<strong> WITHOUT WAKE GENERATOR (</strong>Steady inlet flow)<strong>, WITH a FLAT ENDWALL </strong>(no cavity) <strong>AND WAKE GENERATOR</strong> (unsteady inlet flow)<strong>, WITH ENDWALL CAVITY</strong> (purged cavity) <strong>AND WAKE GENERATOR</strong> (unsteady inlet flow)<strong>.</strong></p> <p>The project has received Funding from the Clean Sky 2 Joint Undertaking under the European Union's Horizon 2020 research and innovation program under the grant agreement 820883.</p>
Case studies related to the manuscript Tuning Trains Speed in Railway Scheduling
<p>This dataset is dedicated to the case studies related to the manuscript <strong>Tuning Trains Speed in Railway Scheduling</strong> by Étienne André, published in the proceedings of the 25th International Conference on Formal Engineering Methods (ICFEM 2024).</p> <p>See README.md for more information.</p>
Data and Software for: 'A NICER View of PSR J1231−1411: A Complex Case'
<p>Posterior sample files associated with the publication "A NICER View of PSR J1231−1411: A Complex Case" by Salmi et al. (2024b; <a href="https://doi.org/10.48550/arXiv.2409.14923">arXiv.2409.14923</a>; <a href="https://doi.org/10.3847/1538-4357/ad81d2">https://doi.org/10.3847/1538-4357/ad81d2</a>).</p> <p>Also included are: the data products; the numeric model files including the telescope calibration products; model modules in the Python language using the X-PSI framework; and Jupyter analysis notebooks.</p> <p>Please refer to the README for detailed information.</p>
Case study on hereditary divergence and its impact on glaucoma
<p>The data extracted from the <a href="http://Disgenet.org/">DisGeNET </a>database are processed using available open sources tools (VEP, polyphen, SIFT, and ClueGo). The process of data analysis is given in the book chapter.</p>
Dataset for the paper "Entity Insertion in Multilingual Linked Corpora: The Case of Wikipedia"
<p>Dataset for the EMNLP'24 Main conference paper titled "Entity Insertion in Multilingual Linked Corpora: The Case of Wikipedia".</p>
Interviews for New Business Models for Pharmaceutical Innovation and Access to Medicines - Case Study of the Oral Cholera Vaccine Development
<p>These supplementary materials represent the partial dataset in the form of semi-structured interviews, collected and analyzed in the research article "The 30-year evolution of oral cholera vaccines: A case study of a collaborative network alternative innovation model". This article is one of the outcomes of the "New Business Models for Pharmaceutical Innovation and Global Access to Medicines" research project, conducted at the Global Health Center, within the Geneva Graduate Institute. The dataset contains 8/16 interviews collected and used in this article, which are published with the informed consent of the interviewees.</p>
Dataset for "Sustainable Disposal and End-of-Life Treatment of Battery Energy Storage Systems: An Environmental and Economic Case Study"
This study investigates the environmental and economic impacts of end-of-life (EOL) treatment for a 2.8 MWh/2.5 MW battery energy storage system (BESS) based on lithium-ion batteries (LIBs). It focuses on recycling pre-treatment processes for battery systems and recycling procedures for components like cooling systems, fire extinguishing systems, inverters, and the reuse of BESS containers and substations. A life cycle assessment (LCA) was employed to evaluate key environmental impacts, including climate change, eutrophication, and resource use. The study reveals substantial environmental benefits, particularly from recovering secondary materials like aluminium and copper, with recycling pre-treatment contributing significantly to overall benefits. Additionally, the economic analysis projects profits, emphasizing the advantages of locally sourcing critical raw materials. The research highlights the need for more sustainable recycling practices and provides insights for improving environmental and economic strategies in BESS management, offering guidance for future research and policy development in battery waste processing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.