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138
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ShareScore release 0.9.0
Dataset results
138 results for “community phylogenetic”
Data from: Propagule pressure increase and phylogenetic diversity decrease community’s susceptibility to invasion
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Data from: A new promising phylogenetic marker to study the diversity of fungal communities: the Glycoside Hydrolase 63 gene
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Reappraising plastid markers of the red algae for phylogenetic community ecology in the gnomic era
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Data from: Phylogenetic diversity is maintained despite richness losses over time in restored tallgrass prairie plant communities
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Data from: Phylogenetic structure and formation mechanism of shrub communities in arid and semi-arid areas of the Mongolian Plateau
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Data from: Phylogenetic composition of host plant communities drives plant-herbivore food web structure
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Data from: Resident-invader phylogenetic relatedness, not resident phylogenetic diversity, controls community invasibility
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Distinct taxonomic and phylogenetic patterns of plant communities on acid and limestone soils in subtropical and tropical China
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Data from: Historical and ecological controls on phylogenetic diversity in Californian plant communities
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Data from: Range shifting species reduce phylogenetic diversity in high latitude communities via competition
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Data from: Differences in endophyte communities of introduced trees depend on the phylogenetic relatedness of the receiving forest
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Data from: Non-linear effects of phylogenetic distance on early-stage establishment of experimentally introduced plants in grassland communities
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Data from: Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies
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Relatedness and the composition of communities over time: evaluating phylogenetic community structure in the late Cenozoic record of bivalves
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Data from: Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers
Microorganisms mediating ammonia oxidation play a fundamental role in the connection between biological nitrogen fixation and anaerobic nitrogen losses. Bacteria and Archaea ammonia oxidizers (AOB and AOA, respectively) have colonized similar habitats worldwide. Ammonia oxidation is the rate-limiting step in nitrification, and the ammonia monooxygenase (Amo) is the key enzyme involved. The molecular ecology of this process has been extensively explored by surveying the gene of the subunit A of the Amo (amoA gene). In the present study, we explored the phylogenetic community ecology of AOB and AOA, analyzing 5776 amoA gene sequences from >300 isolation sources, and clustering habitats by environmental ontologies. As a whole, phylogenetic richness was larger in AOA than in AOB, and sediments contained the highest phylogenetic richness whereas marine plankton the lowest. We also observed that freshwater ammonia oxidizers were phylogenetically richer than their marine counterparts. AOA communities were more dissimilar to each other than those of AOB, and consistent monophyletic lineages were observed for sediments, soils, and marine plankton in AOA but not in AOB. The diversification patterns showed a more constant cladogenesis through time for AOB whereas AOA apparently experienced two fast diversification events separated by a long steady-state episode. The diversification rate (γ statistic) for most of the habitats indicated γ_AOA > γ_AOB. Soil and sediment experienced earlier bursts of diversification whereas habitats usually eutrophic and rich in ammonium such as wastewater and sludge showed accelerated diversification rates towards the present. Overall, this work shows for the first time a global picture of the phylogenetic community structure of both AOB and AOA assemblages following the strictest analytical standards, and provides an ecological view on the differential evolutionary paths experienced by widespread ammonia-oxidizing microorganisms. The emerged picture of AOB and AOA distribution in different habitats provides a new view to understand the ecophysiology of ammonia oxidizers on Earth.
Data from: Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers
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Data from: Seasonal cycles, phylogenetic assembly, and functional diversity of orchid bee communities
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Community assembly in subtidal epibenthic invertebrate communities in the Gulf of Maine: A community phylogenetic and functional trait approach
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.