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188
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ShareScore release 0.9.0
Dataset results
188 results for “content analysis”
RNA-seq analysis of the effect of kanamycin and the ABC transporter AtWBC19 on Arabidopsis thaliana seedlings reveals changes in metal content
GEO Series GSE58662. Arabidopsis thaliana. 4 samples. Type: Expression profiling by high throughput sequencing.
Comparative gene expression analysis in Artemisia annua (cv. CIM-Arogya) seedling and mature leaf tissues having contrasting artemisinin content
GEO Series GSE39098. Artemisia annua. 2 samples. Type: Expression profiling by array.
Analysis of the mRNA content of bovine oviductal extracellular vesicles during the estrous cycle
GEO Series GSE110399. Bos taurus. 20 samples. Type: Expression profiling by high throughput sequencing.
Analysis of gene content among Group II Clostridium botulinum strains
GEO Series GSE40271. Clostridium botulinum. 22 samples. Type: Genome variation profiling by array.
Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation [CROP-seq KO150]
GEO Series GSE263761. Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing; Other.
Transcriptome-wide analysis of the RNA content of purified Nanoblades
GEO Series GSE107035. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing; Other.
Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation [CROP-seq KO15]
GEO Series GSE263760. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Comparative gene expression analysis in fruits of a tomato introgression line performing higher ascorbic acid content
GEO Series GSE19897. Solanum lycopersicum. 24 samples. Type: Expression profiling by array.
Genomic content analysis of Clostridium botulinum type F strains
GEO Series GSE53456. Clostridium botulinum. 22 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Analysis of the small non-coding RNA content of bovine oviductal extracellular vesicles during the estrous cycle
GEO Series GSE110443. Bos taurus. 19 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Data analysis of the health contents to be available on the conceptual design of the app as part of Co-design Activity 1
<p>This dataset presents the analysis of the health contents to be available on the conceptual design of the app.</p>
Data from: Multiplex PCR targeting lineage specific SNPs ‐ A highly efficient and simple approach to block out predator sequences in molecular gut content analysis
Background: Food webs form the basis of biological communities, though empirical research has been hindered by difficulties in quantifying interactions. Metabarcoding from predator gut content extractions with universal primers promises to provide simple and rapid insights into food web interactions. However, the highly overabundant predator DNA often completely outcompetes that of the digested prey DNA during PCR, impeding the ability to assess the abundance and diversity of prey items. Methods: Focusing on the issue of overabundance of predator DNA amplified by a commonly used COI primer pair, we use predator lineage-specific SNPs at the 3'-end of PCR primers to selectively block out predators from amplification. While this approach largely prevents predator amplification, it retains high taxonomic versatility for prey lineages. We introduce a novel multilocus assay, targeting four nuclear and mitochondrial rDNA markers and test our approach in a diverse set of spiders from 12 families. We estimate the recovered prey DNA proportions and compare the taxonomic composition of prey communities between markers. Using a feeding experiment, we also explore recovery of prey DNA over time. Results: While commonly used COI primers yield low and very unpredictable amounts of prey DNA, our assay allows for a considerable and consistent prey enrichment across all tested species. The recovered prey's taxonomic composition is comparable between markers and supports results acquired by COI. The new marker set can be amplified in a simple multiplex PCR, considerably reducing the necessary workload. Conclusions: Our multi-locus approach allows the generation of an unprecedented amount of prey data at low cost and effort. Lineage specific PCR is taxonomically versatile and could readily be adapted to any prey-predator interaction, opening up the opportunity for community-wide studies on food web interactions.
CartoCell, a high-content pipeline for accurate 3D image analysis, unveils cell morphology patterns in epithelial cysts.
<p>CartoCell is a deep learning-based image processing pipeline for the high-content segmentation of whole epithelial cysts acquired at low resolution with minimal human intervention. This pipeline enables high-precision cell segmentation that allows a single cell cartography study of major interest for the search of cellular patterns.<br><br>Paper: https://www.cell.com/cell-reports-methods/pdf/S2667-2375(23)00249-7.pdf</p> <h2><strong>Cite this dataset</strong></h2> <h3><strong>Andrés-San Román, J. A., Gordillo-Vázquez, C., Franco-Barranco, D., Morato, L., Fernández-Espartero, C. H., Baonza, G., ... & Escudero, L. M. (2023). CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia. Cell Reports Methods, 3(10). https://doi.org/10.1016/j.crmeth.2023.100597</strong></h3> <p><strong> </strong></p> <div>More info available at: https://data.mendeley.com/datasets/7gbkxgngpm</div>
Figure 8 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 8 GC-MS chromatogram of derivatives of amino acids after hydrolysis in Taraxaci radices.
Figure 5 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 5 GC-MS chromatogram of derivatives of free amino acids in Rosae fructus.
Figure 2 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 2 GC-MS chromatogram of derivatives of amino acids after hydrolysis in Urticae folia.
Figure 3 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 3 GC-MS chromatogram of derivatives of free amino acids in Myrtilli folia.
Figure 7 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 7 GC-MS chromatogram of derivatives of free amino acids in Taraxaci radices.
Figure 10 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 10 GC-MS chromatogram of derivatives of amino acids after hydrolysis in Menthae folia.
Figure 1 from: Savych A, Marchyshyn S, Mosula L, Bilyk O, Humeniuk I, Davidenko A (2022) Analysis of amino acids content in the plant components of the antidiabetic herbal mixture by GC-MS. Pharmacia 69(1): 69-76. https://doi.org/10.3897/pharmacia.69.e77251
Figure 1 GC-MS chromatogram of derivatives of free amino acids in Urticae folia.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.