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SGS-LTER Paleopedology Study - pedon descriptions on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-1993
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. CPER Paleopedology Study – Pedons - Forty-one pedons representing sites of contrasting geomorphic position (upland plain, upland ridge, dissected upland, terrace, dune) were chosen for pedologic and geomorphic analyses. These pedons are located on the major physiographic units at the CPER, and contain deposits of suspected fluvial and eolian origin. To examine spatial variability, the pedons were typically sampled along transects spaced at 30m intervals. Samples were taken with a hydraulic soil probe to the depth of probe refusal and from suitable stream and road cuts. All soils were described and sampled by genetic horizon (Soil Survey Staff, 1992), and analyzed at Colorado State University. Analyses included particle size and organic C. Nineteen of the 41 pedons were subjected to stable isotopic analysis of organic C and carbonate. Additional information and referenced materials can be found: http://hdl.handle.net/10217/85625.
SGS-LTER Paleopedology Study - soil particle size and grain size on the Central Plains Experimental Range, Nunn, Colorado, USA 1992- 1993
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. CPER Paleopedology Study – Particle and Grain Size - Grain size data from 39 pedons were compared with modal fluvial (7) and eolian (3) samples in order to characterize the origin of CPER parent materials and distinguish the origin of CPER geomorphic features. The seven fluvial sites were located along Owl and Eastman Creeks. The three eolian sites were located on the nearest undisputed dune fields located approximately 5 km north of Roggen, CO (Muhs, 1985). For statistical analysis, the sand and coarse silt fractions were shaken in a nest of half phi(0) interval sieves ranging from -1.0 0 (10 mesh) to 4.5 0 (325 mesh) for 3 minutes. Phi intervals (-log2) were utilized to normalize the particle size data for use in conventional statistics (Krumbein, 1934). The silt and clay fractions were separated by sedimentation using the pipette method. Statistical methods adopted from Folk and Ward (1957) were applied to the -1.0 0 to 7.0 0 fractions using the Sedimentary Petrology Computer Program SEDPET (Warner, 1970) to determine mean grain size (Mz), sorting (Iz), skewness (Skz), and kurtosis (Kz). These parameters were then subjected to univariate and bivariate analysis. The clay fraction was not included in the statistical computations to avoid excessively fine skewing the
SGS-LTER Long-term Seasonal Root Biomass on the Central Plains Experimental Range, Nunn, Colorado, USA 1985-2007, ARS Study Number 3
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. The belowground system in arid and semiarid regions can be of relatively greater importance than in more mesic systems because plant competition is most often for soil water rather than for light in aboveground canopies. Belowground plant biomass in the shortgrass steppe represents approximately 80% of the total. These data, entitled Long-Term Seasonal Root Biomass, were obtained in section 21 of the Central Plains Experimental Range from 1985-2008 in conjunction with a 14C labeling experiment designed to test isotope methods of estimating root production. Paired plots for each of eight replicate 14C labeled plots were established and cored on average six times per year over 13 years (five cores each plot each date as above). There were two primary objectives for collecting these data, 1) to compare estimates of root production (or belowground net primary production - BNPP) obtained using the sequential coring of biomass methods with various isotope, minirhizotron, ingrowth, and other methods, and 2) to examine long-term controls on the temporal dynamics of root biomass. This shortgrass steppe LTER site is the only place we are aware of that has compared most methods of estimating BNPP, including sequential coring, ingrowth cores, and ingrowth donuts, 14C pulse-isotop
SGS-LTER Standard Met Data: 1969-2010 Manually Collected Aboveground Meteorological Data: English Units on the Central Plains Experimental Range, Nunn, Colorado, USA, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82446.
SGS-LTER Transect Study - Organic Carbon in Soils across Toposequences on the Central Plains Experimental Range, Nunn, Colorado, USA 1983-1984
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. CPER SOC across Toposequences - Pedons and their corresponding topography were described along an 8 km transect oriented normal to the major drainages of the CPER. A total of 140 pedons representing 23 toposequences and 7 plains segments were characterized. Sampling sites were selected within toposequences according to slope position (summit, shoulder, backslope, footslope, toeslope) and within plains segments at approximate 100 m intervals. Pedons were described and sampled by genetic horizon according to the standards of the National Cooperative Soil Survey. Analyses, conducted at Colorado State University, included particle size and organic C. Bulk density was estimated empirically according to: Rawls, W.J. 1983. Estimating soil bulk density form particle size analysis and organic matter content. Soil Sci 135: 123-125. Organic C accumulation was measured along an 8 km transect at a site in the semiarid shortgrass steppe of northeastern Colorado. Specific objectives of the study were to (I) measure the quantity and distribution of organic C across toposequences, (ii) test the hypothesis that a disproportionate amount of soil organic C resides in the lowlands (as defined herein), and (iii) assess the role of geomorphic history as a determinant of contemporary rates o
SGS-LTER Ecosystem Stress Area - long-term density dataset following nutrient enrichment stress on the Central Plains Experimental Range in Nunn, Colorado, USA 1975-2011, ARS Study Number 3
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Water, nitrogen, and water-plus-nitrogen at levels beyond the range normally experience by shortgrass steppe communities were applied from 1971 through 1975, plant densities were sampled through 1977, and then sampling resumed in 1982, with sampling frequencies changing from annually to every other year. The initial sampling from 1970 to 1974 showed that the water and water plus nitrogen treatments had the strongest effect on plant community structure, both treatments increased biomass, and exotic weed species were noted on the water plus nitrogen treatment. Later sampling from 1982 to 1991 showed a ten-fold increase in exotic weed species on the water plus nitrogen plots as compared to the controls (Milchunas and Lauenroth 1995), a community change that has persisted on this site due to a chronic elevation of soil nitrogen caused by a plant tissue/soil organic matter feedback mechanism (Vinton and Burke 1995). In 1998, Six new treatments were superimposed on the historic study site. The six new treatments were: control, sugar, lignin, sawdust, lignin and sugar, and sawdust and sugar.In 2010, plots will be sampled every 5 years. Our objective in this study is to examine how plant communities change through time and explore implications of these changes for monitoring
SGS-LTER Ecosystem Stress Area - long-term point-frame (percent basal cover) dataset following nutrient enrichment stress on the Central Plains Experimental Range in Nunn, Colorado, USA 1982-2011, ARS Study Number 3
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Water, nitrogen, and water-plus-nitrogen at levels beyond the range normally experience by shortgrass steppe communities were applied from 1971 through 1975, plant densities were sampled through 1977, and then sampling resumed in 1982, with sampling frequencies changing from annually to every other year. The initial sampling from 1970 to 1974 showed that the water and water plus nitrogen treatments had the strongest effect on plant community structure, both treatments increased biomass, and exotic weed species were noted on the water plus nitrogen treatment. Later sampling from 1982 to 1991 showed a ten-fold increase in exotic weed species on the water plus nitrogen plots as compared to the controls (Milchunas and Lauenroth 1995), a community change that has persisted on this site due to a chronic elevation of soil nitrogen caused by a plant tissue/soil organic matter feedback mechanism (Vinton and Burke 1995). In 1998, Six new treatments were superimposed on the historic study site. The six new treatments were: control, sugar, lignin, sawdust, lignin and sugar, and sawdust and sugar.In 2010, plots will be sampled every 5 years. Our objective in this study is to examine how plant communities change through time and explore implications of these changes for monitoring
SGS-LTER GIS layer with detailed information on study sites on Central Plains Experimental Range, Nunn, Colorado, USA 2012
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. No Abstract Available
Experimental and theoretical study of wind turbine wakes in yawed conditions
<p>Hub-height horizontal-plane PIV measurement data of the wake behind a stand-alone yawed wind turbine.</p> <p>HDF5 data structure:</p> <ul> <li>Yaw_0_Lambda_o: yaw angle (0, 10, 20, 30 degree) case at the optimal tip-speed ratio <ul> <li>u_avg: mean of u (v, w) component.</li> <li>u_std: standard deviation of the u (v, w) component.</li> <li>x: x grid point.</li> <li>y: y grid point.</li> </ul> </li> </ul> <p>Reference</p> <p>Bastankhah, Majid, and Fernando Porté-Agel. "Experimental and theoretical study of wind turbine wakes in yawed conditions." <em>Journal of Fluid Mechanics</em> 806 (2016): 506-541.</p> <p> </p>
TagSeq for gene expression in non-model plants: a pilot study at the Santa Rita Experimental Range NEON core site
<p>TagSeq analysis scripts and assembled transcriptomes for four vascular plant species from the Santa Rita Experimental Range, AZ. Transcriptomes for each species were sequenced and assembled as described below. Additional details available in the associated manuscript: MS LINK. Raw reads for each available at NCBI BioProject #PRJNA599443.</p> <p> </p> <p><strong>Taxon selection and sampling </strong></p> <p>This study focused on four commonly-occurring species at the Santa Rita Experimental Range Long Term Research and Core NEON site (SRER). These include the native species <em>Tidestromia</em> <em>lanuginosa</em> (Nutt.) Standl. (Amaranthaceae; ‘woolly tidestromia’), <em>Parkinsonia</em> <em>florida</em> (Benth. ex A. Gray) S. Watson. (Fabaceae; ‘blue palo verde’), and <em>Bouteloua</em> <em>aristidoides</em> (Kunth) Griseb. (Poaceae; ‘needle grama’), as well as the introduced species <em>Eragrostis</em> <em>lehmanniana</em> Nees (Poaceae; ‘Lehmann lovegrass’; native to southern Africa). All species were identified using a combination of the historical flora of the Santa Rita Experimental Range (Medina, 2003), the Arizona Flora (Kearney et al., 1960), and the Flora of North America (Flora of North America Editorial Committee, eds. 1993). Vouchers were deposited in the University of Arizona herbarium (ARIZ). Tissue from mature plants was collected from an apparently healthy individual representing each target species during the 2017 growing season. An entire stem was sampled for <em>B. aristidoides</em> (with flowers and fruits) and <em>E. lehmanniana</em> (without flowers or fruits). Leaves and leaflets only were sampled for <em>P. florida</em> and <em>T. lanuginosa</em>.</p> <p> </p> <p><strong>RNA extraction and RNA-seq</strong></p> <p>Total RNA was extracted from tissue using the Spectrum Plant Total RNA Kit (Sigma-Aldrich Co., St. Louis, MO, USA) following Protocol A. RNA was used to prepare cDNA using Nugen’s Ovation RNA-Seq System via single primer isothermal amplification (Catalogue # 7102-A01) and automated on the Apollo 324 liquid handler (Wafergen). cDNA was quantified on the Nanodrop (Thermo Fisher Scientific) and was sheared to approximately 300 bp fragments using the Covaris M220 ultrasonicator. Libraries were generated using Kapa Biosystem’s library preparation kit (KK8201). Fragments were end repaired and A-tailed, and individual indexes and adapters (Bioo, catalogue #520999) were ligated on each separate sample. The adapter ligated molecules were cleaned using AMPure beads (Agencourt Bioscience/Beckman Coulter, A63883), and amplified with Kapa’s HIFI enzyme (KK2502). Each library was then analyzed for fragment size on an Agilent’s Tapestation, and quantified by qPCR (KAPA Library Quantification Kit, KK4835) on Thermo Fisher Scientific’s Quantstudio 5 before multiplex pooling (13-16 samples per lane) and paired-end sequencing at 2x150 bp on the Illumina NextSeq500 platform at Arizona State University’s CLAS Genomics Core facility. Raw read quality was assessed using fastQC (Andrews, 2010).</p> <p> </p> <p><strong><em>De novo</em> transcriptome assembly</strong></p> <p>Raw sequence reads were processed using the SnoWhite pipeline (Barker et al., 2010a; Dlugosch et al., 2013), which included trimming adapter sequences and bases with a quality score below 20 from the 3' ends of all reads, removing reads that are entirely primer and/or adapter fragments using TagDust (Lassmann et al., 2009), and removing polyA/T tails with SeqClean (https://sourceforge.net/projects/seqclean/). All transcriptomes were assembled with SOAPdenovo-Trans v1.03 (Xie et al., 2014) using a k-mer of 57. Assembled sequences for each species are in the files ending ".scafSeq".</p> <p> </p> <p><strong>Protein Translations</strong></p> <p>We used TransPipe (Barker et al., 2010) to identify plant proteins within the assembled transcripts for each reference transcriptome and provide protein and in-frame nucleic acid sequences for each species. The reading frame and protein translation for each sequence was identified by comparison to protein sequences from 25 sequenced and annotated plant genomes from Phytozome (Goodstein et al., 2012). Using BLASTX (Wheeler et al., 2008), best hit proteins were paired with each gene at a minimum cutoff of 30% sequence similarity over at least 150 sites. Genes that did not have a best hit protein at this level were removed. To determine the reading frame and generate estimated amino acid sequences, each gene was aligned against its best hit protein by Genewise 2.2.2 (Birney et al., 2004). Based on the highest scoring Genewise DNA-protein alignments, stop and 'N' containing codons were removed to produce estimated amino acid sequences for each gene. Output included paired DNA and protein sequences with the DNA sequence reading frame corresponding to each protein sequence. Nucleic acid sequence files end in “.fna”, whereas amino acid sequence files end in “.faa”. Numbers of sequences in each of these files correspond to the position of the sequence in the associated assembly file.</p> <p> </p> <p><strong>Custom scripts</strong></p> <p>“removePCRdups57.pl” is a Perl script that takes an input FASTQ file and removes exact duplicates identified over a supplied length at the beginning (3’ end) of the read. </p> <p>Run: perl removePCRdups57.pl <inputFASTQ> <length></p> <p> </p> <p>“create_GTF.pl” is a Perl script that takes an input FASTA file and creates a GTF file suitable for input into HtSeq-count v.0.5.4 (Anders et al., 2015).</p> <p>Run: perl create_GTF.pl <inputFASTA></p> <p> </p> <p>“combine_HtSeq.pl” is a Perl script that takes a set of htseq output files and makes a tab delim table of counts with header of sample names and first col of row names. The input file list file should be a text file with lists of Htseq files to combine on each line, where lines are tab delimited of the following form:</p> <p> <NameForOutputFile> <firstHtseqFile> <NextHtseqFile> <...etc...></p> <p>Run: perl combine_HtSeq.pl <inputFileList></p> <p> </p>
Experimental Data Sets for the study "Benchmarking a $(\mu+\lambda)$ Genetic Algorithm with Configurable Crossover Probability"
<p>This is the experimental result of the study "Benchmarking a (μ+λ) Genetic Algorithm with Configurable Crossover Probability". A novel (μ+λ) GA is proposed and benchmarked, in which we stochastically determine whether to apply the crossover operator either for each individual or generation with a crossover probability <span class="math-tex">\(p_c\)</span>. This data set consists of two parts:</p> <ol> <li>The results of (μ+λ) GA on 25 pseudo-Boolean problems defined in <em>IOHprofiler </em>(<a href="https://iohprofiler.github.io/">https://iohprofiler.github.io/</a>) with the following setup: <span class="math-tex">\(\mu \in \{10, 50, 100\}, \lambda \in \{1, \lceil\mu/2\rceil, \mu\}, p_c\in\{0, 0.5\}.\)</span> <ul> <li>'IOHprofiler_Problems_standard_bit_mutation.csv' --> the (μ+λ) GA with standard bit mutation.</li> <li>'IOHprofiler_Problems_fast_mutation.csv' --> the (μ+λ) GA with fast mutation.</li> </ul> </li> <li>The results of (μ+λ) GA on OneMax and LeadingOnes problems with the following setup: <span class="math-tex">\(n \in \{64,100,150,200,250,500\}, \mu \in \{2,3,5,8,10,20,30,...,100\}, \\ \lambda \in \{1, \lceil \mu/2 \rceil, \mu\}, \text{and }p_c \in \{0.1 k \mid k \in [0..9]\}\cup\{0.95\}.\)</span> <ul> <li>'OneMax_raw.csv' --> the fixed-target running time/first hitting time from 100 independent runs for target values in <span class="math-tex">\([1..n]\)</span>.</li> <li>'OneMax_summary.csv' --> the mean, median, standard deviation, some quantiles, expected running time (ERT), the number of successful runs, and the success rate from 100 independent runs for target values in <span class="math-tex">\([1..n]\)</span>.</li> <li>'LeadingOnes_raw.csv' --> the same with 'OneMax_raw.csv' for LeadingOnes.</li> <li>'LeadingOnes_summary.csv' --> the same with 'OneMax_summary.csv' for LeadingOnes.</li> </ul> </li> </ol> <p><strong>Contact</strong>: if you have any questions or suggestions, please feel free to contact <a href="https://www.universiteitleiden.nl/en/staffmembers/furong-ye#tab-1">Furong Ye</a> or <a href="http://www-ia.lip6.fr/~doerr/">Carola Doerr</a>.</p>
An Experimental Study of Operator Choices in the (1+(λ,λ)) Genetic Algorithm
<p>This dataset contains experimental results that accompanies the same-named paper accepted to the MOTOR conference and scheduled to be published in a CCIS volume.</p> <p>The following data files are a part of this dataset, whose meaning should become clear after reading the paper:</p> <ul> <li>w1-runs.csv: the results of each of the runs, each of the configurations on the OneMax problem;</li> <li>w2-runs.csv: same for the LinInt<sub>2</sub> problem;</li> <li>w5-runs.csv: same for the LinInt<sub>5</sub> problem;</li> <li>ms-runs.csv: same for the easy random MAX-SAT instances;</li> <li>w1-stats.csv: the quartile statistics for the OneMax problem;</li> <li>w2-stats.csv: same for the LinInt<sub>2</sub> problem;</li> <li>w5-stats.csv: same for the LinInt<sub>5</sub> problem;</li> <li>ms-stats.csv: same for the easy random MAX-SAT instances;</li> <li>tunings-static.csv: the outcomes of irace for the static configurations (with fixed λ);</li> <li>tunings-dynamic.csv: the outcomes of irace for the dynamic configurations (with self-adjusting λ).</li> </ul> <p>Apart from that, the file pictures.pdf presents the contents of *-stats.csv files visually in a concide way.</p>
Data from: Avian ecological succession in the Amazon: a long-term case study following experimental deforestation
<p>Approximately 20% of the Brazilian Amazon has now been deforested, and the Amazon is currently experiencing the highest rates of deforestation in a decade, leading to large-scale land-use changes. Roads have consistently been implicated as drivers of ongoing Amazon deforestation and may act as corridors to facilitate species invasions. <span>Long-term data, however, are necessary to determine how ecological succession alters avian communities following deforestation and whether established roads lead to a constant influx of new species. </span> </p> <p>We used data across nearly 40 years from a large-scale deforestation experiment in the central Amazon to examine the avian colonization process in a spatial and temporal framework, considering the role that roads may play in facilitating colonization.</p> <p>Since 1979, 139 species that are not part of the original forest avifauna have been recorded, including more secondary forest species than expected based on the regional species pool. Among the 35 species considered to have colonized and become established, a disproportionate number were secondary forest birds (63%), almost all of which first appeared during the 1980s. These new residents comprise about 13% of the current community of permanent residents.</p> <p><span>Widespread generalists associated with secondary forest colonized quickly following deforestation, with few new species added after the first decade, despite a stable road connection. Few species associated with riverine forest or specialized habitats colonized, despite road connection to their preferred source habitat. </span>Colonizing species remained restricted to anthropogenic habitats and did not infiltrate old-growth forests nor displace forest birds.</p> <p>Deforestation and expansion of road networks into <i>terra firme </i>rainforest will continue to create degraded anthropogenic habitat. Even so, the initial pulse of colonization by non-primary forest bird species was not the beginning of a protracted series of invasions in this study, and the process appears to be reversible by forest succession. </p>
Effect of Strain Amplitude on Static and Dynamic Mechanical Properties of Tight Sedimentary Rocks: An Experimental Study
<p>We perform increasing-amplitude triaxial unload cycling tests on three tight sedimentary rocks to investigate the strain-dependent mechanical properties. </p>
Physiological costs and age constraints of a sexual ornament: an experimental study in a wild bird
Sexual ornaments are often considered honest signals of quality because potential costs or constraints prevent their display by low-quality individuals. Testing for potential physiological costs of ornaments is difficult, as this requires experimentally forcing individuals to produce and display elaborate ornaments. We use this approach to test whether a sexually selected trait is physiologically costly to male superb fairy-wrens (Malurus cyaneus). Male fairy-wrens moult from brown to blue breeding plumage at different times of the year, and females strongly prefer the few males that are blue early, during winter. We used short-acting testosterone implants to stimulate males to produce 'early-blue' plumage and assessed costs during and after moult using a panel of physiological indices. Testosterone-implanted, T-males moulted in winter and produced blue plumage six weeks before control-implanted, C-males. T-males moulted while in lower body condition, had lower fat reserves, and were more likely to be parasitised by lice. However, we detected no negative effects on immune function, blood parasites, exposure to stressors, or survival. Juvenile males never naturally display early-blue plumage, but we found no evidence for increased costs paid by juvenile T-males. Instead, juvenile T-males moulted later than adult T-males, suggesting that age presents an absolute constraint on ornament exaggeration that cannot be fully overcome by testosterone treatment. Together, these small costs and large, age-related constraints may enforce signal honesty, and explain female preference for early-blue males.
Data from: Experimental study of shear and hydraulic bonding strength between casing and cement under complex temperature and pressure conditions
The cement sheath plays a vital role in preventing gas channelling. It is important to understand the interfacial bonding between the casing and cement sheath when the downhole temperature and pressure change. This paper demonstrates the results of an experimental study to investigate the effect of high-temperature and high-pressure (HTHP) and their variations on the cement sheath interfacial bonding strength (CSIBS). An experimental device was developed that is used to test the shear and hydraulic bonding strength with the method of uniaxial compression and gas channelling. The results show that both temperature and pressure have a significant influence on the CSIBS. As the curing temperature increases with a constant curing time or as the curing time increases with a constant curing temperature, the CSIBS first increases and then converges to a stable value. The casing roughness has a crucial effect on the shear bonding strength but little effect on the hydraulic bonding strength. Though the CSIBS decreases obviously with the decrease in temperature, it undergoes little change when the temperature first increases and then recovers to the initial value. When the internal casing pressure decreases to a certain value or first increases to a certain value followed by recovery to the initial state, the hydraulic bonding strength tends to be 0 MPa, which means that the interface undergoes debonding between the casing and cement.
Experimental data for the publication: "Evaluating scintillator performance in time-resolved, hard X-ray studies at synchrotron light sources"
<p>In accordance with the expectations outlined in <em><strong>Clarifications of EPSRC expectations on research data management</strong></em> (09/10/14) this data has been made publicly available to complement the open access publication "Evaluating scintillator performance in time-resolved, hard X-ray studies at synchrotron light sources". </p> <p>There are six data sets, corresponding to the six experimental data sets presented in the article. In each data set, which may be identified by their file names and reference to the article, the 1st column is the RF trigger - to - ICCD exposure delay in [ns], and the second column in the intensity recorded on the ICCD in [counts]. This intensity accounts for any online and offline processing outlined in the article, such as on-CCD exposures, dark frame correction etc. </p>
Experimental and simulation results of cure-induced strains for a cure study of an conventional epoxy resin
<p>Datasets of a number of case studies were investigated experimentally in an unconstrained setup. monitoring the temperature development and cure-induced shrinkage of an epoxy thermoset. Simulations using a 2D finite element thermomechanical model are used to elaborate on the thermal behaviour as well as the cure-induced strains seen experimentally for the cases provided. </p> <p>Please cite this folder of shared data and scripts alongside the original publication: <a href="https://doi.org/10.3390/polym16172435">doi.org/10.3390/polym16172435</a></p> <p>Cure cases published:</p> <p>C1 - [40_L]80_L</p> <p>C2 - [50_L]80_L</p> <p>C3 - [50_M]80_M</p> <p>C4 - [50_S70_S]80_M</p> <p>C5 - [50_S60_M]80_M</p> <p>C6 - [50_S60_L]80_M</p> <p>C7 - [50_S30_S]80_M</p> <p>C8 - [50_S30_M]80_M</p> <p> </p> <p>Model file: 1D_CASH.cae - This file contains the model with FE mesh and BC</p> <p>Python script: CASH_1D.py - This file contains the scripting, linking the cure profile with the model and other modifications necessary. The model calls the immediately important state-dependent variables (SDV) to the .odb file. The script then analyses the results from relevant nodal values and saves as an '_FEA_data.csv' file. </p> <p>CKP2_Submit.sh - Shell script for submitting jobs on a remote cluster if necessary. </p> <p> </p>
Experimental Study on the Krauklis Wave Under Fluid Flow
<p>This data set contains the code and data for the "Experimental Study on the Krauklis Wave Under Fluid Flow" and is reffered to the paper submitted in the Journal of Geophysical Research: Solid Earth named "Possibility of Fluid Flow Characterization via a Geophysical Signal: Experimental Study on the Krauklis Wave Under Fluid Flow".</p>
Supporting molecular simulations data for "A combined molecular dynamics and experimental study of two-step process enabling low-temperature formation of phase-pure α-FAPbI3"
<p>Supplementary data for "A combined molecular dynamics and experimental study of two-step process enabling low-temperature formation of phase-pure α-FAPbI3: <a href="https://doi.org/10.1126/sciadv.abe3326">10.1126/sciadv.abe3326</a>"</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.