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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (ChIP-seq)
GEO Series GSE185880. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Higher-order inter-chromosomal hubs shape 3-dimensional genome organization in the nucleus
GEO Series GSE114242. Homo sapiens; Mus musculus. 20 samples. Type: Other.
Wash regulates lamin-dependent nuclear genome organization
GEO Series GSE59854. Drosophila melanogaster. 15 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Global chromatin domain organization of the Drosophila genome
GEO Series GSE10219. Drosophila melanogaster. 43 samples. Type: Genome binding/occupancy profiling by array.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [ChIP-seq]
GEO Series GSE155149. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo [CELseq]
GEO Series GSE273151. Mus musculus. 1 samples. Type: Other.
Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (ChIP-Seq)
GEO Series GSE69422. Arabidopsis thaliana. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes [RNA-seq]
GEO Series GSE126950. Drosophila melanogaster. 9 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes
GEO Series GSE244952. Mus musculus. 25 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [RNA-Seq]
GEO Series GSE143718. Oryza sativa. 16 samples. Type: Expression profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation
GEO Series GSE185470. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Chromosomal translocations are guided by the spatial organization of the genome
GEO Series GSE35519. Mus musculus. 7 samples. Type: Other.
STAG2 mutations and 3D genome organization, chromatin loops, and polycomb signaling in glioblastoma multiforme
GEO Series GSE240343. Homo sapiens. 20 samples. Type: Other; Expression profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons [RNA-Seq]
GEO Series GSE244285. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells
GEO Series GSE227750. Mus musculus. 150 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
A Constitutive Heterochromatic Region Shapes Genome Organization and Impacts Gene Expression in Neurospora crassa
GEO Series GSE269235. Neurospora crassa. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [ChIP-Seq, RNA-seq, Med-Seq]
GEO Series GSE154008. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories (Wheat Hi-ChIP)
GEO Series GSE133883. Triticum aestivum. 2 samples. Type: Other.
Whole organism lineage tracing by combinatorial and cumulative genome editing
GEO Series GSE81713. Homo sapiens; Danio rerio. 136 samples. Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing.
Anti-cancer drugs curaxins target the 3D genome organization [ChIP-seq]
GEO Series GSE122462. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.