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152 results for “gigantism”
Supplementary material 1 from: Bartolucci F, Domina G, Andreatta S, Argenti C, Astuti G, Ballelli S, Ballestrin S, Banfi E, Barberis D, Bernardo L, Bertolli A, Bonali F, Bonini F, Bruschi T, Buccomino G, Caldarella O, Cancellieri L, Caputo P, Conti F, Crisanti A, Del Guacchio E, Falcinelli F, Festi F, Ferri V, Filibeck G, Galasso G, Gestri G, Gigante D, Gubellini L, Gottschlich G, Guarino R, Hofmann N, Király G, Laghi P, Lazzeri V, Lonati M, Luchino F, Lupoletti J, Mei G, Merli M, Pagitz K, Paura B, Pennesi R, Perrino EV, Pica A, Pierini B, Pinzani L, Pittarello M, Praleskouskaya S, Prosser F, Roma-Marzio F, Santi F, Saiani D, Sebellin A, Soldano A, Spilli T, Stinca A, Terzi M, Tiburtini M, Tomasi G, Venanzoni R, Lastrucci L (2022) Notulae to the Italian native vascular flora: 13. Italian Botanist 13: 67-84. https://doi.org/10.3897/italianbotanist.13.86403
Supplementary data
Figure 6 in A new gigantic carnivore (Carnivora, Amphicyonidae) from the late middle Miocene of France
Figure 6 Body mass and diet distribution of the amphicyonids during the Miocene biozones. The horizontal dashed lines refer to the biotic events discussed in the text. The biostratigraphic framework follows Hilgen, Lourens & van Dam (2012). Full-size DOI: 10.7717/peerj.13457/fig-6
Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels - additional data
<p>This repository stores additional data files for the article Rozenberg, Kaczmarczyk, Matzov, Vierock et al (2022) "<a href="https://doi.org/10.1038/s41594-022-00783-x">Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels</a>".</p> <p>The files included are as follows:</p> <ul> <li>Inputs.zip - all input files to <a href="https://github.com/BejaLab/RRB">the workflow</a> (also available there)</li> <li>Species phylogenies: <ul> <li>Chlorophyte_orthogroups.zip, Haptophyte_orthogroups.zip, Dinoflagellate_orthogroups.zip - zip files with the orthogroups used in species phylogeny. Each folder corresponds to an orthogroup (busco orthogroups for chlorophytes and dinoflagellate, proteinortho orthogroups for haptophytes): <ul> <li>mafft.faa - mafft alignment</li> <li>trimal.faa - trimal trimmed alignment</li> <li>iqtree.treefile and iqtree.log - iqtree tree and log file</li> <li>treeshrink.treefile - treeshrink pruned tree</li> </ul> </li> </ul> </li> <li>Structural_alignment.zip includes structural alignments of the bestrhodopsin's rhodopsin and bestrophin domains with reference sequences: <ul> <li>rhodopsins.aln and bestrophins.aln- raw alignments from t_coffee</li> <li>rhodopsins_modified.fasta and bestrophins_modified.fasta - curated alignments</li> <li>rhodopsins.gff and bestrophins.gff - secondary structure features for the sequences</li> </ul> </li> <li>Global phylogeny of bestrophins and rhodopsins: <ul> <li>Bestrophins_global_sequences.zip - sequence data for the bestrophin global phylogeny: <ul> <li>uniref50.txt - uniref50 tabular data matching bestrophins (Pfam PF01062)</li> <li>ur50_long.cdhit, ur50_long.cdhit.clstr - cdhit clustering (50% identity)</li> <li>ur50_trim.faa - filtered and trimmed alignment used as input to iqtree</li> </ul> </li> <li>Bestrophins_global_phylogeny.zip - global bestrophin phylogeny. Subfolders corresponding to different runs with names corresponding to the seed values, each containing iqtree output files, in particular the newick ur50.treefile files.</li> <li>Rhodopsins_global_phylogeny.fasta, Rhodopsins_global_phylogeny.fasta.trimmed - alignment of rhodopsin sequences and its trimmed version as used for rhodopsin bestrophin phylogeny</li> <li>Rhodopsins_global_phylogeny.zip - global rhodopsin phylogeny. Subfolders corresponding to different runs with names corresponding to the seed values, each containing iqtree output files, in particular the newick rhodopsins.treefile files</li> <li>Rhodopsins_global_phylogeny_interproscan.zip - results of interproscan analysis of the rhodopsin sequences used for global phylogeny</li> </ul> </li> </ul>
Fermín Arrudi. El Gigante de Sallent de Gallego
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FIGURE 1. Sampling localities. A in Two species of Edwardsia having gigantic nematocysts, E. aff. tuberculata and E. alternobomen sp. nov. (Cnidaria; Anthozoa; Actiniaria; Edwardsiidae) from Japan
FIGURE 1. Sampling localities. A: Edwardsia aff. tuberculata; B: E. alternobomen sp. nov.
Fig. 4 in Role of temperature and carbonate system variability on a host-parasite system: Implications for the gigantism hypothesis
Fig. 4. (A) Growth and (B) metabolic rates of parasitized (gray bars) and nonparasitized (white bars) of P. purpuratus from central site (Quintay), subject to 12 and 18 ̊C. Bars indicate ± 1 standard error. Asterisk indicates significant differences between parasitism condition (p <0.001).
Fig. 2 in Role of temperature and carbonate system variability on a host-parasite system: Implications for the gigantism hypothesis
Fig. 2. Total shell length of adults parasitized (gray bars) and non-parasitized (white bars) individuals of P. purpuratus from central (Quintay) and southern populations (Concepción). Bars indicate ± 1 standard error. Asterisk indicates significant differences between parasitism condition (p <0.001).
Fig. 3 in Role of temperature and carbonate system variability on a host-parasite system: Implications for the gigantism hypothesis
Fig. 3. Least square means (LSM), the predicted value of the response variable at the mean value of the covariate (Shell Length) in ANCOVA. Responses are (A) total weight, (B) soft tissue weight, (C) shell weight, (D) volume, (E) CaCO3, and (D) LSM of the shell surface of P. purpuratus from central (Quintay) and southern populations (Concepción). Gray bars represent parasitized individuals and white bars, non-parasitized individuals. Asterisk indicates significant differences between parasitism condition, and letter indicates significant differences between sites (p <0.001).
Figure 4 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 4 - The mound of the free-living Formica polyctena colony built on the outlet of the ventilation pipe; the source of the bunker 'colony'. Photo taken on 24.07.2015 (Wojciech Stephan).
Figure 8 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 8 - View from the bunker corridor over the space with the Formica polyctena 'colony'; in the foreground, a vast ant 'cemetery'. Photo taken on 19.01.2016 after reopening the repaired mound for a second search of offspring (Wojciech Stephan).
Figure 7 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 7 - Formica polyctena workers active on their mound surface in winter, keeping nest entrances open. Photo taken on 11.01.2015 (Wojciech Stephan).
Figure 1 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 1 - Partly blocked entrance to the bunker system. In the background, pine-spruce forest overgrowing the hillock built to camouflage the structure. Photo taken on 17.07.2014 (Wojciech Stephan).
Figure 6 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 6 - The mound of Formica polyctena's bunker 'colony' in close-up. In the background, against the wall, an ant 'cemetery' is visible. Photo taken on 24.07.2015 (Wojciech Stephan).
Figure 5 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 5 - Bottom sight of the ventilation pipe outlet. Photo taken on 21.02.2016 (Wojciech Stephan).
Figure 2 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 2 - The earthen mound inhabited by the Formica polyctena 'colony' in the bunker. Photo taken on 11.01.2015 (Wojciech Stephan).
Figure 3 from: Czechowski W, Rutkowski T, Stephan W, Vepsäläinen K (2016) Living beyond the limits of survival: wood ants trapped in a gigantic pitfall. Journal of Hymenoptera Research 51: 227-239. https://doi.org/10.3897/jhr.51.9096
Figure 3 - The upper part of the bunker space with the Formica polyctena 'nest'. In the middle of the ceiling, the input of the ventilation pipe. Ants climbing walls (and hardly reaching the ceiling) en masse within and outside the room are visible (especially well on the door frame). Photo taken on 24.07.2015 (Wojciech Stephan).
Fig. 2 in Gigantic Anemone Species in the Deep 'Churaumi'- Description of a New Species of the Genus Telmatactis (Cnidaria: Anthozoa: Actiniaria: Metridioidea), Telmatactis profundigigantica sp. nov.
Fig. 2. External morphology of the holotype (NSMT-Co 1820) of Telmatactis profundigigantica sp. nov. A, Living polyp of T. profundigigantica sp. nov.; B, oral view of the specimen; C, aboral view (basal disc is damaged); D, enlarged view of a double-headed tentacle. Bold scale bars indicate 5 cm and a narrow bar 1 cm. Abbreviations: Acr, acrosphere; Bd, basal disc; Mo, mouth; Te, tentacle.
Data from: LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
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Co-transcriptional splicing facilitates transcription of gigantic genes
GEO Series GSE268126. Drosophila melanogaster. 9 samples. Type: Expression profiling by high throughput sequencing.
Pituitary Gigantism ArrayCGH
GEO Series GSE226354. Homo sapiens. 1 samples. Type: Genome variation profiling by genome tiling array.
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