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Fig. 13 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 13. Apodrosus viridium. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

Fig. 21 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 21. DIVA reconstruction of ancestral areas for the species of Apodrosus and the most closely related Anypotactus (under the command "maxareas=2"; 17 splitting events). The optimized areas are displayed at the right end of each branch; joint ancestral areas are linked with a comma and alternative optimizations are separated with a forward slash.

Fig. 18 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 18. Occurrences of Apodrosus species in (A) the Bahamas (Grand Bahama and Andros Island) and (B) Hispaniola, Mona Island, and the Turks and Caicos Islands.

Fig. 7 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 7. Apodrosus andersoni. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

Fig. 10 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 10. Apodrosus eximius. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

Fig. 6 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 6. Apodrosus artus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively. This figure is published in colour in the online version of this journal, which can be accessed via http://www.brill/ise

Fig. 8 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 8. Apodrosus earinusparsus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

Fig. 5 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 5. Apodrosus wolcotti, female terminalia. (A) sternum VIII; (B) and (C) coxites in dorsal and lateral view, respectively; (D) spermatheca.

Fig. 2 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 2. (A) Apodrosus epipolevatus, head, ventral view; (B) A. argentatus, mandibles with deciduous processes attached; (C) A. wolcotti, right maxilla, ventral view; (D) A. wolcotti, labial prementum, ventral view. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

Fig. 23. Preferred area cladogram for Apodrosus, selected among six alternative cladograms produced under assumption 2 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 23. Preferred area cladogram for Apodrosus, selected among six alternative cladograms produced under assumption 2 with component analysis, with inferred ancestral areas mapped on the main internal branch. Area labels as in Fig. 21. See text for further detail.

Fig. 12 in Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)

Fig. 12. Apodrosus mammuthus. (A) habitus, dorsal view; (B) head, frontal view; (C) habitus, lateral view; (D) habitus, ventral view; (E) and (F) aedeagus in dorsal and lateral view, respectively; (G) spermatheca. This figure is published in colour in the online version of this journal, which can be accessed via http:// www.brill/ise

opencc-zeroDec 2016View details →

Data from: Multilocus genetic diversity and historical biogeography of the endemic wall lizard from Ibiza and Formentera, Podarcis pityusensis (Squamata: Lacertidae)

Two monophyletic sister species of wall lizards inhabit the two main groups of Balearic Islands: Podarcis lilfordi from islets and small islands around Mallorca and Menorca and Podarcis pityusensis from Ibiza, Formentera and associated islets. Genetic diversity within the endangered P. lilfordi has been well characterized, but P. pityusensis has not been studied in depth. Here, 2430 bp of mtDNA and 15 microsatellite loci were analysed from P. pityusensis populations from across its natural range. Two main genetic groupings were identified, although geographical structuring differed slightly between the mtDNA and the nuclear loci. In general, individuals from islets/islands adjacent to the main island of Ibiza were genetically distinct from those from Formentera and the associated Freus islands for both mtDNA and the nuclear loci. However, most individuals from the island of Ibiza were grouped with neighbouring islets/islands for nuclear loci, but with Formentera and Freus islands for the mitochondrial locus. A time-calibrated Bayesian tree was constructed for the principal mitochondrial lineages within the Balearics, using the multispecies coalescent model, and provided statistical support for divergence of the two main P. pityusensis lineages 0.111–0.295 Ma. This suggests a mid-late Pleistocene intraspecific divergence, compared with an early Pleistocene divergence in P. lilfordi, and postdates some major increases in sea level between 0.4 and 0.6 Ma, which may have flooded Formentera. The program IMa2 provided a posterior divergence time of 0.089–0.221 Ma, which was similar to the multispecies coalescent tree estimate. More significantly, it indicated low but asymmetric effective gene copy migration rates, with higher migration from Formentera to Ibiza populations. Our findings suggest that much of the present-day diversity may have originated from a late Pleistocene colonization of one island group from the other, followed by allopatric divergence of these populations. Subsequent gene flow between these insular groups seems likely to be explained by recent human introductions. Two evolutionary significant units can be defined for P. pityusensis but these units would need to exclude the populations that have been the subjects of recent admixture.

opencc-zeroDec 2014View details →

Data from: Historical biogeography using species geographical ranges

Spatial variation in biodiversity is the result of complex interactions between evolutionary history and ecological factors. Methods in historical biogeography combine phylogenetic information with current species locations to infer the evolutionary history of a clade through space and time. A major limitation of most methods for historical biogeographic inference is the requirement of single locations for terminal lineages, reducing contemporary species geographical ranges to a point in two-dimensional space. In reality, geographic ranges usually show complex geographic patterns, irregular shapes, or discontinuities. In this article, we describe a method for phylogeographic analysis using polygonal species geographic ranges of arbitrary complexity. By integrating the geographic diversification process across species ranges, we provide a method to infer the geographic location of ancestors in a Bayesian framework. By modeling migration conditioned on a phylogenetic tree, this approach permits reconstructing the geographic location of ancestors through time. We apply this new method to the diversification of two neotropical bird genera, Trumpeters (Psophia) and Cinclodes ovenbirds. We demonstrate the usefulness of our method (called rase) in phylogeographic reconstruction of species ancestral locations and contrast our results with previous methods that compel researchers to reduce the distribution of species to one point in space. We discuss model extensions to enable a more general, spatially explicit framework for historical biogeographic analysis.

opencc-zeroDec 2017View details →

Data from: Phylogeny, macroevolutionary trends and historical biogeography of sloths: insights from a Bayesian morphological clock analysis

Sloths, like other xenarthrans, are an extremely interesting group of mammals that, after a long history of evolution and diversification in South America, became established on islands in the Caribbean and later reached North America during the Great American Biotic Interchange. In all three regions they were part of the impressive Pleistocene megafauna. Most taxa became extinct and only two small, distantly related tree-dwelling genera survived. Here we incorporate several recently described genera of sloths into an assembled morphological data supermatrix and apply Bayesian inference, using phylogenetic and morphological clock methods, to 64 sloth genera. Thus, we investigate the evolution of the group in terms of the timing of divergence of different lineages and their diversity, morphological disparity and biogeographical history. The phylogeny obtained supports the existence of the commonly recognized clades for the group. Our results provide divergence time estimates for the major clades within Folivora that could not be dated with molecular methods. Lineage diversity shows an early increase, reaching a peak in the Early Miocene followed by a major drop at the end of the Santacrucian (Early Miocene). A second peak in the Late Miocene was also followed by a major drop at the end of the Huayquerian (Late Miocene). Both events show differential impact at the family level. After that, a slight Plio-Pleistocene decline was observed before the marked drop with the extinction at the end of the Pleistocene. Phenotypic evolutionary rates were high during the early history of the clade, mainly associated with Mylodontidae, but rapidly decreased to lower values around 25 Ma, whereas Megalonychidae have lower values at the beginning followed by a steady increase, peaking during the Late Miocene and the Pliocene. Morphological disparity showed a similar trend, with an early increase, followed by a slowly increasing phase through the Late Oligocene and Early Miocene, and ending with another increase beginning at the middle of the Miocene. Biogeographic analysis showed southern South America as the most probable area of origin of the clade and the main region in which the early diversification events took place. Both Megatheriinae and Nothrotheriinae basal nodes were strongly correlated with Andean uplift events, whereas the early history of Mylodontidae is closely associated with southern South America and also shows an early occupation of the northern regions. Within Megalonychidae, our results show Choloepus as a descendant of an island dispersing ancestor and a probable re-ingression to South America by a clade that originated in Central or North America.

opencc-zeroDec 2013View details →

Data from: Range-wide analysis of genetic structure in a widespread, highly mobile species (Odocoileus hemionus) reveals the importance of historical biogeography

Highly mobile species that thrive in a wide range of habitats are expected to show little genetic differentiation across their range. A limited but growing number of studies have revealed that patterns of broad-scale genetic differentiation can and do emerge in vagile, continuously distributed species. However, these patterns are complex and often shaped by both historical and ecological factors. Comprehensive surveys of genetic variation at a broad scale and at high resolution are useful for detecting cryptic spatial genetic structure, and for investigating the relative roles of historical and ecological processes in structuring widespread, highly mobile species. In this study, we analyzed 10 microsatellite loci from over 1,900 samples collected across the full range of mule deer (Odocoileus hemionus), one of the most widely distributed and abundant of all large mammal species in North America. Through both individual- and population-based analyses we found evidence for three main genetic lineages, one corresponding to the 'mule deer' morphological type and two to the 'black-tailed deer' type. Historical biogeographic events likely are the primary drivers of genetic divergence in this species; boundaries of the three lineages correspond well with predictions based on Pleistocene glacial cycles and substructure within each lineage demonstrates island vicariance. However, across large geographic areas, including the entire mule deer lineage, we found that genetic variation fit an isolation-by-distance pattern rather than discrete clusters. A lack of genetic structure across wide geographic areas of the continental west indicates that ecological processes have not resulted in restrictions to gene flow sufficient for spatial genetic structure to emerge. Our results have important implications for our understanding of evolutionary mechanisms of divergence, as well as for taxonomy, conservation, and management.

opencc-zeroDec 2011View details →

Data from: A maximum likelihood approach to generate hypotheses on the evolution and historical biogeography in the Lower Volga Valley regions (southwest Russia)

The evolution of the diverse flora in the Lower Volga Valley (LVV) (southwest Russia) is complex due to the composite geomorphology and tectonic history of the Caspian Sea and adjacent areas. In the absence of phylogenetic studies and temporal information, we implemented a maximum likelihood (ML) approach and stochastic character mapping reconstruction aiming at recovering historical signals from species occurrence data. A taxon-area matrix of 13 floristic areas and 1018 extant species was constructed and analyzed with RAxML and Mesquite. Additionally, we simulated scenarios with numbers of hypothetical extinct taxa from an unknown palaeoflora that occupied the areas before the dramatic transgression and regression events that have occurred from the Pleistocene to the present day. The flora occurring strictly along the river valley and delta appear to be younger than that of adjacent steppes and desert-like regions, regardless of the chronology of transgression and regression events that led to the geomorphological formation of the LVV. This result is also supported when hypothetical extinct taxa are included in the analyses. The history of each species was inferred by using a stochastic character mapping reconstruction method as implemented in Mesquite. Individual histories appear to be independent from one another and have been shaped by repeated dispersal and extinction events. These reconstructions provide testable hypotheses for more in-depth investigations of their population structure and dynamics.

opencc-zeroDec 2014View details →

Data from: Historical biogeography resolves the origins of endemic Arabian toad lineages (Anura: Bufonidae): evidence for ancient vicariance and dispersal events with the Horn of Africa and South Asia

Background: The Arabian Peninsula is home to a unique fauna that has assembled and evolved throughout the course of major geophysical events, including the separation of the Arabian Plate from Africa and subsequent collision with Eurasia. Opportunities for faunal exchanges with particular continents occurred in temporally distinct periods, and the presence of African, Western Eurasian, and South Asian derived taxa on the Arabian Peninsula signifies the complexity of these historical biogeographic events. The six true toad species (family Bufonidae) endemic to Arabian Peninsula present a considerable taxonomic and biogeographic challenge because they are part of a global bufonid radiation, including several genera surrounding the Arabian Peninsula, and difficult to discriminate morphologically. As they could be derived from African, Western Eurasian, or South Asian toad groups, elucidating their evolutionary relationships has important implications for historical biogeography. Here, we analyze a global molecular data set of 243 bufonid lineages, with an emphasis on new sampling from the Horn of Africa, Western Eurasia, South Asia, and the Arabian Peninsula, to reconstruct the evolutionary relationships of the Arabian species. We produce a robust time-calibrated phylogeny to infer the biogeographic history of this group on and around the Arabian Peninsula. Results: Our phylogenetic analyses indicate two of the endemic Arabian toad species, "Bufo" tihamicus and "Bufo" arabicus, evolved independently within the African genus Amietophrynus. We confirm the Arabian species Duttaphrynus dhufarensis is of South Asian origin, but do not find evidence for the Asian genus Duttaphrynus being present in the Horn of Africa, discrediting a previously proposed Asian bufonid dispersal event to Africa. We also do not find evidence of the African genus Amietophrynus occurring in South Asia, suggesting that unlike many other vertebrate taxa, toads have not used the Arabian Peninsula as a stepping-stone for trans-continental dispersal. Our divergence dating estimates strongly suggest the formation of the Red Sea drove simultaneous divergences between two of the Arabian species (A. tihamicus comb. nov. and A. arabicus comb. nov.) and their xclosest mainland African relatives in the Early Miocene. We estimate the divergence of D. dhufarensis with its closest South Asian relatives occurred in the mid to Late Miocene, suggesting the temporary or permanent land connections between the Arabian plate and Eurasia facilitated dispersal of this lineage to the Arabian Peninsula. Conclusions: The Arabian bufonid assemblage, despite being comparatively depauperate with respect to surrounding continents, exemplifies the faunal pattern of the Arabian Peninsula, namely being a complex admixture of African, Western Eurasian, and South Asian elements. The historical biogeographic patterns exhibited by Arabian toads and their allies are concordant with studies of other vertebrate taxa, building support for the role of major geological events in driving simultaneous vicariance and dispersal events around the Arabian Peninsula. Although many taxa or groups exhibiting disjunct Afro-Arabian distributions appear to have dispersed more recently from the Horn of Africa via a southern land bridge or overwater dispersal, both Amietophrynus tihamicus and A. arabicus likely represent true African relicts resulting from vicariance associated with the Red Sea formation, a pattern that so far is rare among the vertebrate species investigated.

opennotspecifiedDec 2003View details →

FIGURE 32 in Crozetia Davies (Diptera: Simuliidae): redescription of Cr. crozetensis, Cr. seguyi, number of larval instars, phylogenetic relationships and historical biogeography

FIGURE 32. Phylogenetic position of Crozetia based on morphology. Characterstates 1 21 are as discussed by Currie and Grimaldi (2000); characterstates 22 24 are also from Currie & Grimaldi (loc. cit.), but are reoptimized in view of discussion in text.

opennotspecifiedDec 2003View details →

FIGURE 31 in Crozetia Davies (Diptera: Simuliidae): redescription of Cr. crozetensis, Cr. seguyi, number of larval instars, phylogenetic relationships and historical biogeography

FIGURE 31. Histogram of frequency of larval head widths showing probable instars of Crozetia seguyi. Outliers to the extreme right Cr. crozetensis last instar.