Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
855
datasets available to search
ShareScore release 0.9.0
Dataset results
855 results for “model system”
Fig. 3 in Outcome of within-host competition demonstrates that parasite virulence doesn't equal success in a myxozoan model system
Fig. 3. Parasite copy number, as a measure of parasite competition in mixed-genotype treatments, in a) gill tissue sampled at 7d (t7), b) gill tissue sampled at 14d (t14) c) intestinal tissue sampled at 7d, and d) intestinal tissue sampled at 14d. Black bars denote genotype-I only, white denote genotype-II only, and grey denote mixedgenotype treatments. Inset striped grey bars represent total genotype I copy numbers, based on the proportion of genotype I in sequenced DNA samples (genotype II comprises the remainderthe solid grey bar). Letters indicate treatments that differed (Tukey's HSD tests, α = 0.05). Total number of genotype-I (black circles) and genotype-II (white circles) myxospores produced per actinospore, as a measure of parasite success in fish overlaid on parasite copy number in intestinal tissue sampled at 14d.
Fig. 2 in Outcome of within-host competition demonstrates that parasite virulence doesn't equal success in a myxozoan model system
Fig. 2. Median day to death, as a measure of parasite virulence, in treatment groups. Black bars denote genotype-I only, white denote genotype-II only, and grey denote mixed-genotype treatments. Letters indicate treatments that differed (Tukey's HSD tests, α = 0.05).
Fig. 1 in Outcome of within-host competition demonstrates that parasite virulence doesn't equal success in a myxozoan model system
Fig. 1. Experimental schematic and timeline. Timeline begins at t-3 when density of parasites in polychaete cultures (inset a) was estimated in replicate water samples to calculate dose administered on t0 and t6. Specific-pathogen-free (SPF) well water ("W") was used as a negative control and a mock exposure t0 and t6 in treatments that received no parasites on those exposure dates "W"- denotes water, "I: denotes genotype-I and "II" denotes genotype-II (inset b). * denote treatments used for cytokine and immunoglobulin assays (b).
Data: Testing the mating system model of parasite complex life cycle evolution reveals demographically driven mixed mating
<p>Abstract: Many parasite species use multiple host species to complete development; however, empirical tests of models that seek to understand factors impacting evolutionary changes or maintenance of host number in parasite life cycles are scarce. Specifically, Brown et al.’s (2001) mating system model, which posits multi-host life cycles are an adaptation to prevent inbreeding in hermaphroditic parasites and thus, preclude inbreeding depression, remains untested. The model assumes loss of a host results in parasite inbreeding and predicts host loss can only evolve if there is no parasite inbreeding depression. <a name="_Hlk169780726"></a>We provide the first empirical tests of this model using a novel approach we developed for assessing inbreeding depression from field-collected, parasite samples. The method compares genetically-based, selfing-rate estimates to a demographic-based selfing rate, which was derived from the closed mating system experienced by endoparasites. Results from the hermaphroditic trematode <em>Alloglossidium renale</em>, which has a derived 2-host life cycle, supported both the assumption and prediction of the mating system model as this highly inbred species had no indication of inbreeding depression. Additionally, comparisons of genetic and demographic selfing rates revealed <a name="_Hlk169781073"></a>a mixed mating system that could be explained completely by the parasite’s demography, i.e., its infection intensities.</p>
Surrogate waveform model data for black hole binary systems computed in point-particle black hole perturbation theory
<p>This repository contains all publicly available surrogate data for gravitational waveforms produced within the point-particle black hole perturbation theory framework and calibrated to numerical relativity simulations performed with the Spectral Einstein Code (SpEC). </p> <p>Several surrogate models are currently available in this catalog:</p> <ol> <li><strong>BHPTNRSur2dq1e3</strong>, for aligned spin black hole binary systems with mass-ratios varying from 3 to 1000 and spins from −0.8≤χ1≤0.8 on the larger black hole. This surrogate model is trained on waveform data generated by point-particle black hole perturbation theory (ppBHPT) with calibration to numerical relativity (NR) data. The waveforms include all spin-weighted spherical harmonic modes up to ℓ=4 except the (4,1) and m=0 modes. Model details can be found in <a href="https://arxiv.org/abs/2407.18319">Rink et al. 2024</a>. This data file is used to evaluate the surrogate model with either stand-alone Python code hosted by the <a href="https://bhptoolkit.org/BHPTNRSurrogate/">Black Hole Perturbation Toolkit</a> (Jupyter notebook <a href="https://github.com/BlackHolePerturbationToolkit/BHPTNRSurrogate/blob/main/tutorials/BHPTNRSur2dq1e3.ipynb">tutorial</a>) or the GWSurrogate Python package, which can be found on <a href="https://pypi.python.org/pypi/gwsurrogate/">PyPI</a> or <a href="https://anaconda.org/conda-forge/gwsurrogate">conda-forge</a>.</li> <li><strong>BHPTNRSur1dq1e4</strong>, an updated version of the <strong>EMRISur1dq1e4 </strong>model described below. The updated version includes better calibration to NR, a smoother transition to plunge model, and more harmonic modes. Model details can be found in <a href="https://arxiv.org/abs/2204.01972">Islam et al. 2022</a>. This data file is used to evaluate the surrogate model with either stand-alone Python code hosted by the <a href="https://bhptoolkit.org/BHPTNRSurrogate/">Black Hole Perturbation Toolkit</a> (Jupyter notebook <a href="https://github.com/BlackHolePerturbationToolkit/BHPTNRSurrogate/tree/main/tutorials/BHPTNRSur1dq1e4">tutorial</a>) or the GWSurrogate Python package, which can be found on <a href="https://pypi.python.org/pypi/gwsurrogate/">PyPI</a> or <a href="https://anaconda.org/conda-forge/gwsurrogate">conda-forge</a>.</li> <li><strong>EMRISur1dq1e4</strong>, for non-spinning black hole binary systems with mass-ratios varying from 3 to 10000. This surrogate model is trained on waveform data generated by point-particle black hole perturbation theory (ppBHPT), with the total mass rescaling parameter tuned to NR simulations. Available modes are [(2,2), (2,1), (3,3), (3,2), (3,1), (4,4), (4,3), (4,2), (5,5), (5,4), (5,3)]. The m<0 modes are deduced from the m>0 modes. Model details can be found in <a href="https://arxiv.org/abs/1910.10473">Rifat et al. 2019</a>. This data file is used to evaluate the surrogate model with either stand-alone Python code hosted by the <a href="http://github.com/BlackHolePerturbationToolkit/EMRISurrogate">Black Hole Perturbation Toolkit</a> (Jupyter notebook <a href="https://github.com/BlackHolePerturbationToolkit/EMRISurrogate/blob/master/EMRISur1dq1e4.ipynb">tutorial</a>) or the GWSurrogate Python package (Jupyter notebook <a href="https://github.com/sxs-collaboration/gwsurrogate/blob/master/tutorial/notebooks/nonspinning_nr_emri.ipynb">tutorial</a>), which can be found on <a href="https://pypi.python.org/pypi/gwsurrogate/">PyPI</a>.</li> </ol>
Datasets, trained models and supporting results for machine learning tensorial properties of atomic systems via XPaiNN model.
Open the record for dataset details and reuse information.
Eutrophication indicators in the Baltic Sea 1970-2100 and nutrient loads to three coastal systems. BALTSEM model simulations and observations.
<p>Dataset and model code accompanying manuscript: </p> <p>Ehrnsten, E. Humborg C., Gustafsson, E. and Gustafsson B. G. 2024. Disaster avoided: current state of the Baltic Sea without human intervention to reduce nutrient loads. Resubmitted to Limnology & Oceanography Letters 2024-09-13. </p> <p> </p> <p>This repository contains the following files:</p> <p> </p> <p>1_Data_description.pdf</p> <p>Description of data sets and details on model forcing and data collection methods.</p> <p> </p> <p>Eutrophication_indicators1970-2021_BALTSEM_and_observations.xlsx</p> <p>Eutrophication indicators in the Baltic Sea: BALTSEM model simulation output from real load and no reduction scenarios as well as observations 1970-2021.</p> <p> </p> <p>BALTSEM_output_future_1970-2100.xlsx</p> <p>BALTSEM model simulation output 1970-2021 with observed nutrient loads (Real loads scenario) and statistics of 100 model runs 2022-2100 with present (2021) nutrient loads. The 100 runs represent statistical variations in forcing and boundary conditions to account for uncertainty in future weather and sea level conditions.</p> <p> </p> <p>NPloads_BS_M_C.xlsx</p> <p>Nitrogen and phosphorus loads from the Baltic Sea, Mississippi and Changjiang catchments 1950-2021 collected from several published sources.</p> <p> </p> <p>baltsem9.5_carbon.tar.gz</p> <p>Copressed folder with model code for BALTSEM 9.5 as well as forcing data used in the simulations. Information on folder contents and a user guide to run the model simuations can be found in the file BALTSEMGettingStartedCarbon.pdf</p>
Replication Package for "PyTraceBERT: Python Traceback-based Language Model for Detecting Compatibility Issues in Deep Learning Systems"
<p>This package contains the traceback data, pre-trained models, and static word embeddings used in the paper, PyTraceBERT: Python Traceback-based Language Model for Detecting Compatibility Issues in Deep Learning Systems.</p>
Supplemental material for: Software System Testing assisted by Large Language Models: An Exploratory Study
<p>This is the supplemental material of the paper titled as “Software System Testing Assisted by Large Language Models: An Exploratory Study” presented at the 36th International Conference on Testing Software and Systems.</p> <p>It contains the raw execution data generated by both models, GPT-4o and GPT-4omini, during the exploratory study. The supplementary material includes the following files:</p> <ul> <li><em>GPT-4ominiRQ1-2ExecutionData.zip</em>: contains the JSON outputs from the OpenAI API for the GPT-4o mini model. Each output is labeled according to the research question number and the corresponding timestamp (for RQ1) or the requested test case (for RQ2), all provided in plain text format.</li> <li><em>GPT-4oRQ1-2ExecutionData.zip</em>: contains the JSON outputs from the OpenAI API for the GPT-4o model. Like the previous file, each output is named in plain text format based on the research question number and timestamp (for RQ1) or the requested test case (for RQ2).</li> </ul> <p>To cite this work: </p> <p>C. Augusto, J. Morán, A. Bertolino, C. de la Riva and J. Tuya, “S<em>oftware System Testing assisted by Large Language Models: An Exploratory Study</em>”, in <em>Testing Software and Systems</em> (pp. 239–255). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-80889-0_17</p>
Winter Precipitation-Type Models for "Evidential Deep Learning: Enhancing Predictive Uncertainty Estimation for Earth System Science Applications"
<p>This contains trained model weights, scalers, and evaluation metrics for the winter precipitation-type models trained as part of the paper "Evidential Deep Learning: Enhancing Predictive Uncertainty Estimation for Earth System Science Applications". </p>
SeasFire Cube: A Global Dataset for Seasonal Fire Modeling in the Earth System
<p>The <strong>SeasFire Cube</strong> is a scientific datacube for seasonal fire forecasting around the <strong>globe</strong>. Apart from seasonal fire forecasting, which is the aim of the SeasFire project, the datacube can be used for several other tasks. For example, it can be used to model teleconnections and memory effects in the earth system. Additionally, it can be used to model emissions from wildfires and the evolution of wildfire regimes.<br> <br> It has been created in the context of the <a href="https://seasfire.hua.gr/">SeasFire project</a>, which deals with "<em>Earth System Deep Learning for Seasonal Fire Forecasting</em>" and <strong>is funded by the European Space Agency (ESA) </strong> in the context of ESA Future EO-1 Science for Society Call.<br> <br> It contains <strong>21 years</strong> of data (2001-2021) in an <strong>8-days</strong> time resolution and <strong>0.25 degrees grid</strong> resolution. It has a diverse range of seasonal fire drivers. It expands from atmospheric and climatological ones to vegetation variables, socioeconomic and the target variables related to wildfires such as burned areas, fire radiative power, and wildfire-related CO2 emissions.</p> Datacube properties <table><tbody><tr> <th> <p><strong>Feature</strong></p> </th> <th> <p><strong>Value</strong></p> </th> </tr> </tbody><tbody> <tr> <td> <p>Spatial Coverage</p> </td> <td> <p>Global</p> </td> </tr> <tr> <td> <p>Temporal Coverage</p> </td> <td> <p>2001 to 2021</p> </td> </tr> <tr> <td> <p>Spatial Resolution</p> </td> <td> <p>0.25 deg x 0.25 deg</p> </td> </tr> <tr> <td> <p>Temporal Resolution</p> </td> <td> <p>8 days</p> </td> </tr> <tr> <td> <p>Number of Variables</p> </td> <td> <p>54</p> </td> </tr> <tr> <td> <p>Tutorial Link </p> </td> <td> <p><a href="https://github.com/SeasFire/seasfire-datacube">https://github.com/SeasFire/seasfire-datacube</a></p> </td> </tr> </tbody> </table> <table> <tbody><tr> <th>Full name</th> <th>DataArray name</th> <th>Unit</th> <th>Contact *</th> </tr> </tbody><tbody> <tr> <th>Dataset: <a href="https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-pressure-levels?tab=overview">ERA5 Meteo Reanalysis Data</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Mean sea level pressure</th> <td>mslp</td> <td>Pa</td> <td>NOA</td> </tr> <tr> <th>Total precipitation</th> <td>tp</td> <td>m</td> <td>MPI</td> </tr> <tr> <th>Relative humidity</th> <td>rel_hum</td> <td>%</td> <td>MPI</td> </tr> <tr> <th>Vapor Pressure Deficit</th> <td>vpd</td> <td>hPa</td> <td>MPI</td> </tr> <tr> <th>Sea Surface Temperature</th> <td>sst</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Skin temperature</th> <td>skt</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Wind speed at 10 meters</th> <td>ws10</td> <td>m*s-2</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Mean</th> <td>t2m_mean</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Min</th> <td>t2m_min</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Temperature at 2 meters - Max</th> <td>t2m_max</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Surface net solar radiation</th> <td>ssr</td> <td>MJ m-2</td> <td>MPI</td> </tr> <tr> <th>Surface solar radiation downwards</th> <td>ssrd</td> <td>MJ m-2</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 1</th> <td>swvl1</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th> <table> <tbody> <tr> <th>Volumetric soil water level 2</th> </tr> </tbody> </table> </th> <td>swvl2</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 3</th> <td>swvl3</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Volumetric soil water level 4</th> <td>swvl4</td> <td>m3/m3</td> <td>MPI</td> </tr> <tr> <th>Land-Sea mask</th> <td>lsm</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>Dataset: Copernicus <p><a href="http://cds.climate.copernicus.eu/cdsapp#!/dataset/cems-fire-historical?tab=overview">CEMS</a></p> </th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Drought Code Maximum</th> <td>drought_code_max</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Drought Code Average</th> <td>drought_code_mean</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Fire Weather Index Maximum</th> <td>fwi_max</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Fire Weather Index Average</th> <td>fwi_mean</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://confluence.ecmwf.int/display/CKB/CAMS%3A+Global+Fire+Assimilation+System+%28GFAS%29+data+documentation">CAMS: Global Fire Assimilation System (GFAS)</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Carbon dioxide emissions from wildfires</th> <td>cams_co2fire</td> <td>kg/m²</td> <td>NOA</td> </tr> <tr> <th>Fire radiative power</th> <td>cams_frpfire</td> <td>W/m²</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://climate.esa.int/en/projects/fire/data/">FireCCI - European Space Agency’s Climate Change Initiative</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Burned Areas from Fire Climate Change Initiative (FCCI)</th> <td>fcci_ba</td> <td>ha</td> <td>NOA</td> </tr> <tr> <th>Valid mask of FCCI burned areas</th> <td>fcci_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th><br> Fraction of burnable area</th> <td>fcci_fraction_of_burnable_area</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Number of patches</th> <td>fcci_number_of_patches</td> <td>N</td> <td>NOA</td> </tr> <tr> <th>Fraction of observed area</th> <td>fcci_fraction_of_observed_area</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Dataset: Nasa MODIS <a href="https://lpdaac.usgs.gov/products/mod11c1v006/">MOD11C1</a>, <a href="https://lpdaac.usgs.gov/products/mod13c1v006/">MOD13C1</a>, <a href="https://lpdaac.usgs.gov/products/mcd15a2hv006/">MCD15A2</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Land Surface temperature at day</th> <td>lst_day</td> <td>K</td> <td>MPI</td> </tr> <tr> <th>Leaf Area Index</th> <td>lai</td> <td>m²/m²</td> <td>MPI</td> </tr> <tr> <th>Normalized Difference Vegetation Index</th> <td>ndvi</td> <td>unitless</td> <td>MPI</td> </tr> <tr> <th>Dataset: Nasa SEDAC <a href="https://sedac.ciesin.columbia.edu/data/set/gpw-v4-population-density-adjusted-to-2015-unwpp-country-totals-rev11">Gridded Population of the World (GPW), v4</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Population density</th> <td>pop_dens</td> <td>persons per square kilometers</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://www.globalfiredata.org/data.html">Global Fire Emissions Database (GFED)</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Burned Areas from GFED (large fires only)</th> <td>gfed_ba</td> <td>hectares (ha)</td> <td>MPI</td> </tr> <tr> <th>Valid mask of GFED burned areas</th> <td>gfed_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>GFED basis regions</th> <td>gfed_region</td> <td>N</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="http://gwis.jrc.ec.europa.eu/apps/country.profile/downloads">Global Wildfire Information System (GWIS)</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Burned Areas from GWIS</th> <td>gwis_ba</td> <td>ha</td> <td>NOA</td> </tr> <tr> <th>Valid mask of GWIS burned areas</th> <td>gwis_ba_valid_mask</td> <td>0-1</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://psl.noaa.gov/data/climateindices/list/">NOAA Climate Indices</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Arctic Oscillation Index</th> <td>oci_ao</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Western Pacific Index</th> <td>oci_wp</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Pacific North American Index</th> <td>oci_pna</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>North Atlantic Oscillation</th> <td>oci_nao</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Southern Oscillation Index</th> <td>oci_soi</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Global Mean Land/Ocean Temperature</th> <td>oci_gmsst</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Pacific Decadal Oscillation</th> <td>oci_pdo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Eastern Asia/Western Russia</th> <td>oci_ea</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>East Pacific/North Pacific Oscillation</th> <td>oci_epo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Nino 3.4 Anomaly</th> <td>oci_nino_34_anom</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Bivariate ENSO Timeseries</th> <td>oci_censo</td> <td>unitless</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://www.esa-landcover-cci.org/">ESA CCI</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Land Cover Class 0 - No data</th> <td>lccs_class_0</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 1 - Agriculture</th> <td>lccs_class_1</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 2 - Forest</th> <td>lccs_class_2</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 3 - Grassland</th> <td>lccs_class_3</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 4 - Wetlands</th> <td>lccs_class_4</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 5 - Settlement</th> <td>lccs_class_5</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 6 - Shrubland</th> <td>lccs_class_6</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 7 - Sparse vegetation, bare areas, permanent snow and ice</th> <td>lccs_class_7</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Land Cover Class 8 - Water Bodies</th> <td>lccs_class_8</td> <td>%</td> <td>NOA</td> </tr> <tr> <th>Dataset: <a href="https://ecoregions.appspot.com/">Biomes</a></th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Dataset: Calculated</th> <td> </td> <td> </td> <td> </td> </tr> <tr> <th>Grid Area in square meters</th> <td>area</td> <td>m²</td> <td>NOA</td> </tr> </tbody> </table> <p>*The datacube specifications (temporal, spatial resolution, chunk size) have been set up by the Max Planck Institut (MPI) team. For the variables that the contact is MPI, Lazaro Alonso (lalonso <at> bgc-jena.mpg.de) has led the efforts to collect and process them. For the variables that the contact is NOA, Ilektra Karasante (ile.karasante <at> noa.gr) has led the efforts to collect and process them.</p>
Data from: Building on 150 years of knowledge: the freshwater isopod Asellus aquaticus as an integrative eco-evolutionary model system
<p><strong>Introduction</strong></p> <p>This is a literature database with reference information of all papers that use the freshwater isopod <em>Asellus aquaticus</em>; published between the years 1867 and 2020. This database is intended as a starting point for scientists interested in conducting research on and with this organism. The database is currently only available as a single CSV file; future versions may be made available through a more frequently updated SQL database. The database includes specific information about the subject area and content of each paper, as well as bibliographic information. This repository is associated with the paper "Building on 150 years of knowledge: the freshwater isopod<em> Asellus aquaticus</em> as an integrative eco-evolutionary model system", published in Frontiers in Ecology and Evolution.</p> <p><strong>Details on Methods from the electronic supplement:</strong></p> <p>We used the we online search tools of Web of Science (WOS; Clarivate analytics) by searching for the term "asellus aquaticus" in six relevant databases (BIOSIS, CABI, FSTA, Medline, WOS Core Collection and Zoological Records). The database was accessed with a University License (Lund University). We manually downloaded the results and combined them to a single CSV file in Excel (Microsoft). All further processing was done in the statistical programming language R, version 4.0.2 (R Core Team 2020).</p> <p>From the 1238 obtained records we discarded three papers that were published after the year 2020 to work with completed years only. We used the subject areas assigned by WOS to provide an overview of the fields of science in which A. aquaticus has been most studied. Each paper had between one and ten subject areas assigned by WOS (2845 assignments to 1235 papers, meaning 2.3 assignments per paper, on average). To represent these multiple assignments in relation to the actual number of papers per year, we calculated "fractional assignments" by adding up all assignments to a field per year, divided by the total number of assignments in that year, and then multiplied by the number of papers. For example, if there were 12 assignments to "toxicology" in 1993, and 133 assignments in 1993, but only 21 papers published, "toxicology" would get a score of 1.9 papers in 1993 (as calculated by = (12/133)*21). In Figure 1, we represent these "fractional assignments" in the top panel, and the total number of assignments in the lower panel.</p> <p><strong>Caption for figure (1) in publication:</strong></p> <p>FIGURE 1 | Over 150 years of research on and with Asellus aquaticus. The figure summarizes published scientific literature on A. aquaticus. We conducted a quantitative literature survey with the search tools of Web of Science (WOS; Clarivate analytics) by searching for the term "asellus aquaticus" in six databases (i.e., BIOSIS, CABI, FSTA, Medline, WOS Core Collection, and Zoological Records). We found 1235 records, published between 1867 and 2020. (A) The graph shows the number of publications per year within a given subject area, as designated by WOS. (B) The graph shows the total number of publications assigned to a specific subject area. The top 10 fields account for 72.58% of all publications, and are indicated by color coding in A and B (multiple assignments are possible, summing up to 2845 assignments). The inset in B shows a wordcloud with the 100 most used keywords from all A. aquaticus’ publications. Furthermore, we compiled all records with relevant information (e.g., title, keywords, research areas, and abstract) to a single file which is available online. More details can be found in the Supplementary Material.</p>
A review of systems modelling for local sustainability
<p>This repository provides the data used in: Moallemi, E. A., Bertone, E., Eker, S., Gao, L., Szetey, K., Taylor, N., & Bryan, B. A. (2021). A review of systems modelling for local sustainability. <em>Environmental Research Letters</em>. </p>
Model weights for COIPS system
<p>This dataset is publish by the research "<em>A Deep Learning-based Quality Assessment and Segmentation System with a Large-scale Benchmark Dataset for Optical Coherence Tomographic Angiography Image</em>"</p> <p>Detail:</p> <p>This is the <strong>model weights</strong> for the automated computer-aided OCTA image processing system (COIPS). GitHub: <a href="https://github.com/shanzha09/COIPS">https://github.com/shanzha09/COIPS</a></p> <p>These datasets are public available, if you use the dataset or our system in your research, please <strong>cite</strong> our paper: <em><code>A Deep Learning-based Quality Assessment and Segmentation System with a Large-scale Benchmark Dataset for Optical Coherence Tomographic Angiography Image</code></em>.</p> <p>arXiv:<a href="https://arxiv.org/abs/2107.10476v1">https://arxiv.org/abs/2107.10476v1</a></p>
Models for JGR-SE paper: Azimuthal anisotropy tomography of the Southeast Asia subduction system
<p>3-D models of isotropic Vp and azimuthal anisotropy tomography beneath the Southeast Asia subduction system.</p>
Data input for the RegMex model experiment on the power system and flexible sector coupling
<p>This file provides the input data used in the power system flexibility model experiment performed within the RegMex project. Comprehensive information about the project can be found in the project report [Lechtenböhmer2018] (in German, see link in the file). In the experiment performed with the data documented here, three scenarios were considered, labelled "Import", "Decentralized" and "Offshore". This file contains the input for all scenarios. All further information on the model and scenario configuration is available from the project report. Many technology parameter have been derived as own assumptions within previous projects, relying on different sources. Details can be found in the cited PhD and masters theses. In the experiment, Germany was modelled with 18 regions reflecting the transmission grid operator zones (see map in the file).</p>
Dataset for: Using the quasi-chemical model beyond the quadruplet approximation: Density and Viscosity Models for Molten Salt Fuel Systems
<p>Contains data plotted in the figures of the manuscript with the same title (submitted, 2021). </p>
Data for the paper: Earth System Model Parameter Adjustment Using a Green's Functions Approach
<p>This dataset contains model codes and scripts used to generate the results of the paper submitted to Geoscientific Model Development journal</p>
Dataset part one to the publication "CAL-1 as Cellular Model System to Study CCR7-Guided Human Dendritic Cell Migration"
<p>This study was supported in parts by research funding from the Swiss National Science Foundation (grant number 310030_189144), the Thurgauische Stiftung für Wissenschaft und Forschung, and the State Secretariat for Education, Research and Innovation to DFL.</p>
A new sampling capability for uncertainty quantification in the Ice-sheet and Sea-level System Model v4.19 using Gaussian Markov random fields -- Datasets and results
<p>Data archives for test experiments (Section 3) and Pine Island Glacier application (Section 4) from the manuscript "Kevin Bulthuis and Eric Larour, A new sampling capability for uncertainty quantification in the Ice-sheet and Sea-Level System Model v4.19 using Gaussian Markov random fields"</p> <p>Source code is available at https://doi.org/10.5281/zenodo.5532775.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.