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234 results for “molecular characterisation”
FIGURE 7. 18S in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 7. 18S phylogenetic tree of bipaliine geoplanids. Maximum likelihood phylogenetic tree based on 15 partial 18S genes, using the TVM+I+G4 model of evolution. The tree with the best likelihood is shown, and ML bootstrap support values are indicated. The subfamilies within the Geoplanidae (Rhynchodeminae, Geoplaninae and Bipaliinae) are indicated. Based on the matrix and method in Justine et al. (2022) with the addition of the new sequence of Bipalium admarginatum.
FIGURE 8 in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 8. Phylogenetic tree of geoplanids based on nine sequences of elongation factor 1-alpha (EF1-α), including five new; only the part of the tree containing the Bipaliinae is shown. Maximum likelihood phylogenetic tree based on 9 sequences, using the GTR+I+G4 model of evolution. All OQ sequences are our own and new.
FIGURE 6 in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 6. Maximum likelihood phylogenetic tree obtained from concatenated amino-acid sequences of the mitochondrial proteins of Bipalium admarginatum and other flatworms. The tree represents both Maximum likelihood and Bayesian inference phylogenies, performed using mtZOA+I+G4 and CPREV+I+G4 models of evolution, respectively. The tree with the best likelihood is shown, and bootstrap values are indicated. The BI tree had an identical topology, posterior probabilities are indicated on the right as decimal values. Subfamilies of Geoplanidae are indicated on the right. Based on the matrix and method used in Gastineau et al. (2022) with addition of the new sequence of B. admarginatum.
FIGURE 5 in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 5. Sequence motifs obtained by aligning with WebLogo3 the tRNA-Thr genes annotated in the mitogenomes of Diversibipalium multilineatum, Bipalium kewense, Diversibipalium mayottensis, Bipalium vagum, Obama nungara and Amaga expatria with the suspected corresponding sequences of Humbertium covidum and Bipalium admarginatum. The height of each nucleotide indicates the conservation at that position. The blue box shows the conserved sequence of the anticodon.
FIGURE 4 in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 4. Bipalium admarginatum, map of mitochondrial genome. The mitogenome codes for 12 conserved protein-coding genes, 21 tRNA and 2 rRNA.
FIGURE 3. Bipalium admarginatum, preserved specimens. A in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 3. Bipalium admarginatum, preserved specimens. A, specimen MNHN JL354, undamaged; B-D, specimen MNHN JL355; B, undamaged; C, partially showing ventral surface; D, damaged, showing ventral surface and position of mouth and gonopore. A, B, photographs taken in 2019 vs. C, D, photographs taken in 2023, note that artefactual yellow colour seen in the earlier photographs has vanished. Photos by Jean-Lou Justine.
FIGURE 2. Bipalium admarginatum, live specimens photographed under artificial light. A in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 2. Bipalium admarginatum, live specimens photographed under artificial light. A, specimen MNHN JL354; B, Specimen MNHN JL355. Photos by George Verdon.
FIGURE 1 in Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome
FIGURE 1. Bipalium admarginatum, live specimens photographed in the field under natural light. A, specimen not collected, photographed 16-08-2019. B, specimen MNHN JL354 (a part of this specimen was used for the molecular analysis). Unscaled. Photos by George Verdon.
Fig. 7. The 10 001 in Morphological and molecular characterisation of Enchodelus babakicus n. sp. and E. macrodorus Thorne, 1939 (Nematoda: Nordiidae) from Iran
Fig. 7. The 10 001st Bayesian tree inferred from near full 18S rDNA under GTR + I + G model (lnL = 4710.6816; freqA = 0.2789; freqC = 0.2144; freqG = 0.2584; freqT = 0.2482; R(a) = 1.853; R(b) = 5.7493; R(c) = 3.595; R(d) = 0.3164; R(e) = 11.9272; R(f) = 1; Pinva = 0.7165; Shape = 0.6844). Posterior probability values exceeding 50% are given on appropriate clades.
Fig. 1. Enchodelus babakicus n in Morphological and molecular characterisation of Enchodelus babakicus n. sp. and E. macrodorus Thorne, 1939 (Nematoda: Nordiidae) from Iran
Fig. 1. Enchodelus babakicus n. sp. A-C: Female (holotype). A: Anterior end; B: Vagina; C: Tail. D-F: Male. D: Anterior end; E: Guiding system; F: Posterior end; G, H: Entire body of male and female; I: Female tail variation.
Fig. 2. Enchodelus babakicus n in Morphological and molecular characterisation of Enchodelus babakicus n. sp. and E. macrodorus Thorne, 1939 (Nematoda: Nordiidae) from Iran
Fig. 2. Enchodelus babakicus n. sp. Juveniles. A-D: Anterior end of J1-J4; E-G: Primordium of J2-J4; H-K: Tails of J1-J4, respectively.
Characterising Metastatic Penile Cancer Using Molecular Imaging - Hybrid MRI-PET [MRI-PET]
ClinicalTrials.gov study NCT02104063. IPD Sharing: Not stated. Countries: 1. Publications: 16.
Feasibility of a Molecular Characterisation Approach to Treatment
ClinicalTrials.gov study NCT02112357. IPD Sharing: Not stated. Countries: 1. Publications: 2.
The Role of Plant-Based Omega-3 Fatty Acids and Molecular Characterisation in Individuals with Cardiovascular(CVD) Risk
ClinicalTrials.gov study NCT05882266. IPD Sharing: NO. Countries: 1. Publications: 2.
Data from: Molecular characterisation of trophic ecology within an island radiation of insect herbivores (Curculionidae: Entiminae: Cratopus).
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Figure 7 from: Hlebec D, Sivec I, Podnar M, Skejo J, Kučinić M (2021) Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperla popijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). ZooKeys 1078: 85-106. https://doi.org/10.3897/zookeys.1078.66382
Figure 7 Colour heat map showing inter- and intraspecific uncorrected p-distances of the mitochondrial cytochrome oxidase subunit I (COI) barcode region. Isoperla popijaci sp. nov. and Isoperla PL appear as highly divergent. Intraspecific p-distances are outlined by the black line.
Figure 2 from: Hlebec D, Sivec I, Podnar M, Skejo J, Kučinić M (2021) Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperla popijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). ZooKeys 1078: 85-106. https://doi.org/10.3897/zookeys.1078.66382
Figure 2 Morphology of Isoperla popijaci sp. nov. A head and pronotum in dorsal view (adult female PT) B terminalia in ventral view (adult female PT) C terminalia in ventral view (adult male HT) D head and pronotum in dorsal view (larval PT) E abdomen in dorsal view and detail of a distal segment of a cercus (larval PT) F right maxilla in dorsal view (larval PT) G penial armature (adult male HT). Scale bars: 1 mm (A–D); 0.5 mm (E–G).
Figure 6 from: Hlebec D, Sivec I, Podnar M, Skejo J, Kučinić M (2021) Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperla popijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). ZooKeys 1078: 85-106. https://doi.org/10.3897/zookeys.1078.66382
Figure 6 Maximum Likelihood cladogram, based on the analysis of the COI haplotypes of Isoperla species. Numbers at the nodes indicate Neighbour-Joining (NJ), Maximum Likelihood (ML) bootstrap support values (BS) and Bayesian posterior probabilities (BPP), respectively. The results of species delimitations are represented with the vertical bars, from left to right, indicate the OTUs inferred by bPTP, ABGD and mPTP. "Isoperla PL" indicates additional separate lineage obtained in this study. Terminal codes present BOLD/GenBank Process ID, as in Table 1.
Figure 3 from: Hlebec D, Sivec I, Podnar M, Skejo J, Kučinić M (2021) Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperla popijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). ZooKeys 1078: 85-106. https://doi.org/10.3897/zookeys.1078.66382
Figure 3 Egg of Isoperla popijaci sp.nov. A whole egg, lateral view B detail of hatching line, lateral view
Figure 5 from: Hlebec D, Sivec I, Podnar M, Skejo J, Kučinić M (2021) Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperla popijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). ZooKeys 1078: 85-106. https://doi.org/10.3897/zookeys.1078.66382
Figure 5 Type locality of the Popijač's Yellow Sally, Isoperla popijaci sp. nov.: Ševerova Cave in Croatia A and B photographs in wet phase C, D photographs in dry phase E map (blue circle indicates type locality).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.