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FIGURE 2. Statistical parsimony haplotype network constructed from 621 in Description of two new species of Rhamphus related to R. oxyacanthae (Curculionidae, Curculioninae, Rhamphini) from Italy based on a morphological study supported by molecular data
FIGURE 2. Statistical parsimony haplotype network constructed from 621 bp of the mtCOI gene of Rhamphus oxyacanthae in Italy (GenBank accession number MW879276- MW879285). Circles sizes are proportional to haplotype frequency (for details see supplementary S1).
FIGURE 21. Strict consensus tree obtained from the 6 most parsimonious trees obtained from a in A radiation of hydrobiid snails in the caves and streams at Precipitous Bluff southwest Tasmania, Australia (Mollusca: Caenogastropoda: Rissooidea: Hydrobiidae s.l.) ,
FIGURE 21. Strict consensus tree obtained from the 6 most parsimonious trees obtained from a cladistic analysis of the data in Table 13. The unambiguous character changes are listed on each branch (see Table 14 for list of characters). Bootstrap values of more than 50% are included next to the relevant branches on the left.
FIGURE 1. Maximum parsimony tree constructed under a 7 in Taxonomic status of Brucepattersonius albinasus (Rodentia: Sigmodontinae)
FIGURE 1. Maximum parsimony tree constructed under a 7:1 ts:tv ratio scheme, with six haplotypes of B. griserufescens, the holotype of B. albinasus and two haplotypes from GenBank: B. iheringi and B. soricinus. Tree length = 555, CI = 0.9225, RI = 0.8673, RC = 0.8001. Numbers above the branches are bootstrap values (1000 / 500 replicates from MP / ML analyses).
FIGURE 2 in Biogeographic area relationships in Venezuela: A Parsimony analysis of Culicidae-Phytotelmata distribution in National Parks
FIGURE 2. The most parsimonious cladogram (Length=101 steps) obtained with implicit enumeration, showing the characters (mosquito species; Table IV) that were a synapomorphy (black circles) or a homoplasy (white circles). Numbers above and below branches indicate bootstrap and jackknife support respectively (1000 replications).
FIGURE 1 in Biogeographic area relationships in Venezuela: A Parsimony analysis of Culicidae-Phytotelmata distribution in National Parks
FIGURE 1. Map of Venezuela showing where immature mosquitoes were sampled from phytotelmata habitats in National Parks and Protected Areas, and the biogeographical areas deducted from the PAE cladogram. Numbers on figure are collecting locations: 1=HUACHAMAKARI TEPUI, 2=PERIJA, 3=GRAN SABANA, 4=AUYAN TEPUI, 5=RORAIMA-KUKENAN TEPUI, 6=GUANAY TEPUI, 7=YUTAJE TEPUI, 8=TAMA, 9=DINIRA, 10=SIERRA NEVADA "A", 11=SIERRA NEVADA "B", 12=CERRO COPEY, 13=CERRO SANTA ANA, 14=SIERRA DE SAN LUIS, 15=RANCHO GRANDE, 16=GUATOPO
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50 in Molecular systematics of Malagasy poison frogs in the Mantella betsileo and M. laevigata species groups
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50% majority-rule consensus tree of 65700 equally most parsimonious trees. Mantella bernhardi was defined as outgroup. Specimens with identical haplotypes were merged; numbers in brackets after names of taxa give the number of specimens with the same haplotype. Numbers at nodes are bootstrap values in percent from a Maximum Parsimony bootstrap analysis with 250 replicates. Asterisks denote posterior probabilities from a partitioned Bayesian analysis: (*)>90%; *>95%; **>99%.
FIGURE 9. Single most parsimonious tree during a in Reticulitermes malletei (Isoptera: Rhinotermitidae): a valid Nearctic subterranean termite from Eastern North America
FIGURE 9. Single most parsimonious tree during a branch and bound search using PAUP* (Swofford 2001). Bootstrap values for 1,000 replicates are listed above the branches supported at =50%.
FIGURE 4. Parsimony cladogram inferred from ITS1 in New combinations in Asiatic Oxybasis (Amaranthaceae s.l.): evidence from morphological, carpological and molecular data
FIGURE 4. Parsimony cladogram inferred from ITS1 nucleotide sequences from Oxybasis sp., Chenopodiastrum murale, C. hybridum and C. coronopus. Bootstrap consensus tree built by Maximum Parsimony method. Bootstrap values higher than 70% are shown. The tree was rooted with Polygonum aviculare.
FIGURE 1. Maximum parsimony phylogram inferred from partial 5.8S in Systematic analyses of Ophiocordyceps ramosissimum sp. nov., a new species from a larvae of Hepialidae in China
FIGURE 1. Maximum parsimony phylogram inferred from partial 5.8S ITS, nrSSU, EF-1α, RPB1 sequence data. Bootstrap values above the branches are from 1,000 replicates. The tree is rooted with Glomerella cingulata. Type species are marked with an asterisk.
FIGURE 2. Individual hypothetical area cladograms and matrix creation through BuM 2.0. A. Individual area cladogram with a redundant Area E. B. Individual area cladogram with a redundant Area D. C. Individual area cladogram with a in BuM 2.0: Software for online generation of matrices for Brooks Parsimony Analysis
FIGURE 2. Individual hypothetical area cladograms and matrix creation through BuM 2.0. A. Individual area cladogram with a redundant Area E. B. Individual area cladogram with a redundant Area D. C. Individual area cladogram with a MAST (D#E). D. Combined MRP-matrix after BuM 2.0 (option Modified BPA); og: outgroup. E. General area cladogram after the parsimony analysis of the combined matrix. The resulting pattern converges with the actual pattern of fragmentation of ancestral Area 0.
FIGURE 1 in BuM 2.0: Software for online generation of matrices for Brooks Parsimony Analysis
FIGURE 1. Hypothetical scenario showing the sequence of breakups of an ancestral Area 0, and the corresponding area cladogram depicting the actual relationships among the current landmasses.
FIGURE 1. Topology showing the most parsimonious tree obtained from a heuristic search with 1,000 in A new species of Microthyrium from Yunnan, China
FIGURE 1. Topology showing the most parsimonious tree obtained from a heuristic search with 1,000 random taxon additions of the combined dataset of SSU and LSU sequences alignment using PAUP v. 4.0b10. The scale bar shows 10 changes. Bootstrap support values for maximum parsimony (MP) and maximum likelihood (ML) greater than 50% above the nodes. The values below the nodes are Bayesian posterior probabilities above 0.95. Hyphen ("-") indicates a value lower than 50% (BS) or 0.90 (PP). The original isolate numbers are noted after the species names. The tree is rooted to Schismatomma decolorans.
FIGURE 1. The most parsimonious trees obtained from a heuristic search with 1000 in Phyllosticta species from banana (Musa sp.) in Chongqing and Guizhou Provinces, China
FIGURE 1. The most parsimonious trees obtained from a heuristic search with 1000 random taxon additions of the LSU sequences using PAUP v. 4.0b10. The scale bar shows 5 changes. Bootstrap support values for maximum parsimony (MP) and Bayesian posterior probabilities above 0.90are shown. A hyphens (–) indicates the value lower than 50% (BS) or 0.90 (PP). The tree is rooted to Botryosphaeria dothidea. Ex-type/ex-epitype isolates are marked by an asterisk *. Novel sequences are in boldface.
Figure 3. Ninety-five per cent maximum parsimony networks obtained for the 12 in Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)
Figure 3. Ninety-five per cent maximum parsimony networks obtained for the 12 haplotypes in Proedromys liangshanensis. Circle sizes are proportional to haplotype frequencies.
FIGURE 3. The strict consensus tree from parsimony analysis for the combined 16S and RAG1-AmpF1 in Maluti Mystery: A systematic review of Amietia vertebralis (Hewitt, 1927) and Strongylopus hymenopus (Boulenger, 1920) (Anura: Pyxicephalidae)
FIGURE 3. The strict consensus tree from parsimony analysis for the combined 16S and RAG1-AmpF1 dataset with Pyxicephalus adspersus as the outgroup. Bootstrap values are shown at the major nodes. Branch lengths are proportional to the number of unambiguous changes in the original sequence data. Abbreviations of localities for sequenced samples are as follows: M = Mohlaka, B = Bafali, D = Senqu, Q = Qabane, S = Tsatsana, T = Tugela, V = Vemvane, J = Sani, * = Genbank sequence. Note that the two Amietia angolensis sequences from Genbank emerge from the tree as divergent lineages. This may indicate cryptic diversity or simply misidentification of these phenotypically diverse and difficult to identify frogs.
FIGURE 8. Single most parsimonious tree with a in Systematics of the Etheostoma cinereum (Teleostei: Percidae) species complex (subgenus Allohistium)
FIGURE 8. Single most parsimonious tree with a length of 72 steps (CI = 0.96, RI = 0.91) generated by analysis of Recombination Activation Gene 1 (RAG1) sequence data. Bootstrap and decay support is listed above and below each internode, respectively. An asterisk indicates nodes recovered with posterior probability values>95% in a Bayesian analysis with an identical topology.
Figure 5. Agreement subtree cladogram obtained with the Ratchet algorithm for parsimonious analyses using the complete morphological matrix without gamete-related characters. Values above branches are bootstrap supports after 1000 in High level of phenotypic homoplasy amongst eutardigrades (Tardigrada) based on morphological and total evidence phylogenetic analyses
Figure 5. Agreement subtree cladogram obtained with the Ratchet algorithm for parsimonious analyses using the complete morphological matrix without gamete-related characters. Values above branches are bootstrap supports after 1000 replicates; values under branches are Bremer relative supports.
Figure 5. Parsimony network obtained with TCS for the 18S rRNA information from Echiniscus species. A in Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada, Heterotardigrada)
Figure 5. Parsimony network obtained with TCS for the 18S rRNA information from Echiniscus species. A photo with the cuticular design for each species is provided. E. merokensis SP, Spanish Echiniscus merokensis merokensis. E. merokensis Tar759 SUE, subspecies Echiniscus merokensis suecicus. The three supported groups found among the Echiniscus species, based on cuticle design, are identified with dotted squares, and named as I, II, and III.
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 in Phylogenetic analysis of the Pantomorus-Naupactus complex (Coleoptera: Curculionidae: Entiminae) from North and Central America
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 morphological characters coded as additive. Bootstrap values over 50% below the corresponding branches.
FIGURE 1. Most parsimonious morphological tree under equal weights, with 17 in Phylogenetic analysis of the Pantomorus-Naupactus complex (Coleoptera: Curculionidae: Entiminae) from North and Central America
FIGURE 1. Most parsimonious morphological tree under equal weights, with 17 morphological characters coded as additive. Bremer support values over 3 are given above each corresponding branch and bootstrap values over 50% are below the branches.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.