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Dataset for Publication "Seasonality of isoprenoid emissions from a primary rainforest in central Amazonia"
<p>This is the dataset presented in:</p> <p>Alves, E. G., Jardine, K., Tota, J., Jardine, A., Yãnez-Serrano, A. M., Karl, T., Tavares, J., Nelson, B., Gu, D., Stavrakou, T., Martin, S., Artaxo, P., Manzi, A., and Guenther, A.: Seasonality of isoprenoid emissions from a primary rainforest in central Amazonia, Atmos. Chem. Phys., 16, 3903–3925, https://doi.org/10.5194/acp-16-3903-2016, 2016.</p>
Fig. 5. Sample-based rarefaction curve with 95 in Crepuscular and nocturnal hawkmoths (Lepidoptera: Sphingidae) from a fragment of Atlantic rainforest in the state of São Paulo, southeastern Brazil
Fig. 5. Sample-based rarefaction curve with 95% confidence interval and results of the richness estimators (triangle: Jackknife 1; X: Jackknife 2; open circle: ICE; square: Chao 2).
Fig. 4 in Crepuscular and nocturnal hawkmoths (Lepidoptera: Sphingidae) from a fragment of Atlantic rainforest in the state of São Paulo, southeastern Brazil
Fig. 4. Sphingidae richness (A) and abundance (B) by month of sampling. Line represents monthly mean temperatures.
Impacts of rainforest degradation on the diets of the insectivorous bats of Sabah
<b>Description: </b><p>The work was carried out within Sabah, at the SAFE project, Danum Valley and Maliau basin. Bats were captured by deploying 6 harp traps per night, during field seasons taking place in 2015, 2016 and 2017. Bat guano samples were collected by placing individual bats into cloth bags, and then releasing them after 12 hours. Any guano in the bottom of the bag was then transferred into 95% ethanol and stored at -20. DNA was extracted from the faecal samples using a Qiagen Stool Mini kit, and then amplified using the ZBJ-ArtF1c ZBJ-ArtR2c primers, and sequencing the DNA on an Illumina MiSeq.</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/182"><b>Impacts of rainforest degradation on the diets of the insectivorous bats of Sabah</b></a></p><p><b>Funding: </b>These data were collected as part of research funded by: </p><ul><li>NERC (Standard grant, NE/K016407/1)</li><li>Royal Society (Standard grant, RG130793)</li><li>Bat Conservation International (Standard grant)</li></ul><p>This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.</p><p></p><p><b>Permits: </b>These data were collected under permit from the following authorities:</p><ul><li>Sabah Biodiversity Centre (Research licence JKM/MBS.1000-2/2 JLD.4 (46))</li></ul><p></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=3247465">here</a></p><p><b>Files: </b>This dataset consists of 3 files: Bat_SAFE_data_metadata.xlsx, interaction_network.csv, sequences_95.fasta</p><p><b>Bat_SAFE_data_metadata.xlsx</b></p><p>This file contains dataset metadata and 1 data tables:</p><ol><li><p><b>data</b> (described in worksheet Data)</p><p>Description: measurements collected</p><p>Number of fields: 21</p><p>Number of data rows: 3292</p><p>Fields: </p><ul><li><b>TrapName</b>: The trap ID which the bats were captured in (Field type: ID)</li><li><b>Lat</b>: Latitude of trap (Field type: Latitude)</li><li><b>Long</b>: Longitude of trap (Field type: Longitude)</li><li><b>Elevation</b>: Elevation of trap (Field type: Numeric)</li><li><b>Bat_no</b>: Bat ID (Field type: ID)</li><li><b>Date</b>: Date of capture (Field type: Date)</li><li><b>Faeces_no1</b>: Tube number used to store faecal sample. Pairs up with column names of interaction matrix (Field type: ID)</li><li><b>Faeces_no2</b>: Number of any additional faeces (Field type: ID)</li><li><b>Biopsy_Dave</b>: Tube used to store wing biopsy (Field type: ID)</li><li><b>Block</b>: If sampling occurred within the SAFE landscape, this is the block it occurred within (Field type: ID)</li><li><b>Fragment</b>: If sampling occurred within the SAFE landscape, this is the fragment size it occurred within (Field type: ID)</li><li><b>Site</b>: The site within Sabah sampling occurred at (Field type: ID)</li><li><b>Species</b>: The bat species ID (Field type: Taxa)</li><li><b>Sex</b>: Male or Female (Field type: Categorical trait)</li><li><b>Age</b>: Was the bat an adult or juvenile (Field type: Categorical trait)</li><li><b>Forearm</b>: The forearm length of the bat (Field type: Numeric trait)</li><li><b>Weight</b>: The weight of the bat (Field type: Numeric Trait)</li><li><b>Reproductive_condition</b>: If a female bat, if the bat was Non-Reproductive, PRegnant, LActating or Post-Lactating (Field type: Categorical trait)</li><li><b>Parasite</b>: Tube used to store any ectoparasites obtained (Field type: ID)</li><li><b>Time</b>: If the bat was captured in evening or morning (Field type: Categorical)</li><li><b>Tag</b>: Band ID, if used (Field type: ID)</li></ul></li></ol><p><b>interaction_network.csv</b></p><p>Description: A network of operational taxonomic units found within the guano of bats captured in Sabah. The column names refer to the bat guano id, as found in the columns 'Faeces_no1' and 'Faeces_no2' in the fieldwork data, and the rownames refer to the OTU of the prey, which is paired to the names of the OTUs in the fasta file.</p><p><b>sequences_95.fasta</b></p><p>Description: A fasta file of prey OTUs found in bat guano, generated using 95% similarity for clustering. The sequence names correspond with the rownames of the file interaction_network.csv</p><p><b>Date range: </b>2015-02-16 to 2017-07-21</p><p><b>Latitudinal extent: </b>4.5000 to 5.0933</p><p><b>Longitudinal extent: </b>116.7500 to 117.8380</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div>Animalia<br> - Chordata<br> -  - Mammalia<br> -  -  - Chiroptera<br> -  -  -  - Emballonuridae<br> -  -  -  -  - <i>Emballonura</i><br> -  -  -  -  -  - <i>Emballonura alecto</i><br> -  -  -  -  -  - <i>Emballonura monticola</i><br> -  -  -  - Hipposideridae<br> -  -  -  -  - <i>Hipposideros</i><br> -  -  -  -  -  - <i>Hipposideros ater</i><br> -  -  -  -  -  - <i>Hipposideros bicolor</i><br> -  -  -  -  -  - <i>Hipposideros cervinus</i><br> -  -  -  -  -  - <i>Hipposideros diadema</i><br> -  -  -  -  -  - <i>Hipposideros doriae</i><br> -  -  -  -  -  - <i>Hipposideros dyacorum</i><br> -  -  -  -  -  - <i>Hipposideros galeritus</i><br> -  -  -  -  -  - <i>Hipposideros ridleyi</i><br> -  -  -  - Megadermatidae<br> -  -  -  -  - <i>Megaderma</i><br> -  -  -  -  -  - <i>Megaderma spasma</i><br> -  -  -  - Nycteridae<br> -  -  -  -  - <i>Nycteris</i><br> -  -  -  -  -  - <i>Nycteris tragata</i><br> -  -  -  - Pteropodidae<br> -  -  -  -  - <i>Balionycteris</i><br> -  -  -  -  -  - <i>Balionycteris maculata</i><br> -  -  -  -  - <i>Macroglossus</i><br> -  -  -  -  -  - <i>Macroglossus minimus</i><br> -  -  -  -  - <i>Megaerops</i><br> -  -  -  -  -  - <i>Megaerops wetmorei</i><br> -  -  -  - Rhinolophidae<br> -  -  -  -  - <i>Rhinolophus</i><br> -  -  -  -  -  - <i>Rhinolophus acuminatus</i><br> -  -  -  -  -  - <i>Rhinolophus affinis</i><br> -  -  -  -  -  - <i>Rhinolophus borneensis</i><br> -  -  -  -  -  - <i>Rhinolophus creaghi</i><br> -  -  -  -  -  - <i>Rhinolophus luctus</i><br> -  -  -  -  -  - <i>Rhinolophus sedulus</i><br> -  -  -  -  -  - <i>Rhinolophus trifoliatus</i><br> -  -  -  - Vespertilionidae<br> -  -  -  -  - <i>Harpiocephalus</i><br> -  -  -  -  -  - <i>Harpiocephalus harpia</i><br> -  -  -  -  - <i>Hesperoptenus</i><br> -  -  -  -  -  - <i>Hesperoptenus blanfordi</i><br> -  -  -  -  - <i>Kerivoula</i><br> -  -  -  -  -  - <i>Kerivoula hardwickii</i><br> -  -  -  -  -  - <i>Kerivoula intermedia</i><br> -  -  -  -  -  - <i>Kerivoula lenis</i><br> -  -  -  -  -  - <i>Kerivoula minuta</i><br> -  -  -  -  -  - <i>Kerivoula papillosa</i><br> -  -  -  -  -  - <i>Kerivoula pellucida</i><br> -  -  -  -  -  - <i>Kerivoula whiteheadi</i><br> -  -  -  -  - <i>Murina</i><br> -  -  -  -  -  - <i>Murina aenea</i><br> -  -  -  -  -  - <i>Murina cyclotis</i><br> -  -  -  -  -  - <i>Murina rozendaali</i><br> -  -  -  -  -  - <i>Murina suilla</i><br> -  -  -  -  - <i>Myotis</i><br> -  -  -  -  -  - <i>Myotis muricola</i><br> -  -  -  -  -  - <i>Myotis ridleyi</i><br> -  -  -  -  - <i>Phoniscus</i><br> -  -  -  -  -  - <i>Phoniscus atrox</i><br> -  -  -  -  - <i>Pipistrellus</i><br> -  -  -  -  -  - <i>Pipistrellus javanicus</i><br> -  -  -  -  -  - <i>Pipistrellus tenuis</i><br> -  -  -  -  - <i>Scotophilus</i><br> -  -  -  -  -  - <i>Scotophilus kuhlii</i><br></div><p></p>
Figure 4 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 4 Habitus of collected species of Megalomus Rambur, 1842 (Neuroptera, Hemerobiidae) and their geographical distribution in Neotropics; red circles = previous records, red stars = new records. A-B, M. impudicus (Gerstaecker, 1888). C-D, M. rafaeli Penny & Monserrat, 1985. E-F, M. ricoi Monserrat, 1997.
Figure 10 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 10 Species distributions of Hemerobiidae (Neuroptera) along altitudinal gradient in five areas in the Atlantic rainforest of São Paulo state, Brazil, collected between October 2009 and December 2011. asl = above sea level, PEI = Parque Estadual Intervales, PEMD = Parque Estadual Morro do Diabo, PESM/NSV = Parque Estadual da Serra do Mar, Núcleo Santa Virgínia, PESM/NP = Parque Estadual da Serra do Mar, Núcleo Picinguaba and EEJI = Estação Ecológica Juréia-Itatins.
Figure 1 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 1 Map of Brazil with the original extension of the Atlantic rainforest biome in black color and map of the São Paulo state with the collection sites. PEI = Parque Estadual Intervales, PEMD = Parque Estadual Morro do Diabo, PESM/NSV = Parque Estadual da Serra do Mar, Núcleo Santa Virgínia, PESM/NP = Parque Estadual da Serra do Mar, Núcleo Picinguaba and EEJI = Estação Ecológica Juréia-Itatins. Image sources: www.wwf.org.br and Google Earth.
Figure 2 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 2 Habitus of collected species of Hemerobius Linnaeus, 1758 (Neuroptera, Hemerobiidae) and their geographical distribution in Neotropics; red circles = previous records, red stars = new records. A-B, H. cubanus Banks, 1930. C-D, H. edui Monserrat, 1991. E-F, H. gaitoi Monserrat, 1996.
Figure 6 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 6 Habitus of collected species of Sympherobius Banks, 1904 (Neuroptera, Hemerobiidae) and their geographical distribution in Neotropics; red circles = previous records, red stars = new records. A-B, S. ariasi Penny & Monserrat, 1985. C-D, S. mirandus (Navás, 1920).
Figure 8 in Diversity and temporal variation of brown lacewings (Neuroptera, Hemerobiidae) from Atlantic rainforest areas in southeastern Brazil
Figure 8 Genera of Hemerobiidae (Neuroptera) collected monthly with Malaise traps in five areas of Atlantic rainforest of São Paulo State, Brazil, between October 2009 and December 2011. A, Nusalala Navás, 1913. B, Hemerobius Linnaeus, 1758. C, Megalomus Rambur, 1842. D, Notiobiella Banks, 1909. E, Sympherobius Banks, 1904.
Fig. 1 in Metapolybia araujoi, a new species of swarming social wasp from the Brazilian Amazon rainforest (Vespidae: Polistinae)
Fig. 1. Metapolybia araujoi Somavilla & Andena new species: (A) dorsal view; (B) lateral view; (C) metasoma in lateral view; (D) head front view; (E) anterior and posterior wings. Scale bar = 01 mm. Figures by Agnièle Touret-Alby © MNHN.
Figs. 1–7 in First report of two species of scarab beetles (Coleoptera, Scarabaeidae) inside nests of Azteca cf. chartifex Forel (Hymenoptera, Formicidae) in Brazilian Amazonian Rainforest
Figs. 1–7. Azteca cf. chartifex nest and its associated myrmecophile beetles. 1, Nest, sectioned at its third lower part, which was searched for myrmecophiles. 2, Upclose view of upper nest part, with no sight of large galleries. 3, Large gallery on the collected nest piece, in which one beetle was found. 4, Phileurus carinatus declivis, dorsal view. 5, Phileurus carinatus declivis, ventral view. 6, Cyclidius elongatus, dorsal view. 7, Cyclidius elongatus, ventral view.
Figure 5 in Impact of rainforest conversion into monoculture plantation systems on pseudoscorpion density, diversity and trophic niches
Figure 5. Stable isotope values of pseudoscorpion species in different land-use systems; means with standard deviation. Dashed horizontal lines represent estimated trophic level boundaries; trophic level 1 (plant material) not shown. Decomposers feeding on detritus (trophic level 2) were assumed to be enriched in 15N by 1.7 ‰ compared to leaf litter, each following trophic level was assumed to span 3.4 ‰ (Post 2002; Potapov et al. 2019a). For abbreviations see Table 1.
Figure 3 in Impact of rainforest conversion into monoculture plantation systems on pseudoscorpion density, diversity and trophic niches
Figure 3. Bootstrap species accumulation curve based on the number of adult individuals in the studied land-use systems.
Figure 4 in Impact of rainforest conversion into monoculture plantation systems on pseudoscorpion density, diversity and trophic niches
Figure 4. Venn diagram of the species composition in the three land-use systems studied (rainforest, rubber, oil palm) in the Bukit Duabelas (left) and Harapan landscape (right). Landscape-specific species are underlined in red. The riparian-specific species in Harapan is underlined in cyan. For abbreviations see Table 1.
Figure 2 in Impact of rainforest conversion into monoculture plantation systems on pseudoscorpion density, diversity and trophic niches
Figure 2. Density of pseudoscorpions in litter and soil of the three land-use systems studied (rainforest, rubber, oil palm) in the Bukit Duabelas and Harapan landscape. Each data point represents one sampling plot (three pooled subplot samples). Only non-riparian sites are shown.
Figure 1 in Impact of rainforest conversion into monoculture plantation systems on pseudoscorpion density, diversity and trophic niches
Figure 1. Four species of pseudoscorpions found at the study sites. From left to right: Atemnidae sp.1, Lagynochthonius sp.1, Atemnidae sp.2, Hya minuta.
Figure 6 in Monthly variation of leaf litter Collembola in the tropical rainforest of Los Tuxtlas, Veracruz, Mexico
Figure 6. Relationship between precipitation, mean monthly temperature and abudance of collembola in pitfull traps for 2015.
Figure 2 in Monthly variation of leaf litter Collembola in the tropical rainforest of Los Tuxtlas, Veracruz, Mexico
Figure 2. Abudances and percentages of Collembola families collected in pitfall traps at Los Tuxtlas Tropical Biology Station, Veracruz, Mexico.
Figures 1-4 in Record of the dung beetle Canthon lucreciae Halffter & Halffter, 2009 (Coleoptera: Scarabaeinae) feeding on a millipede in a tropical rainforest
Figures 1-4. Canthon lucreciae feeding on an individual of the millipede Messicobolus magnificus. 1. Attacking directly on the wound opening. 2. Ventral part of the millipede showing diplosegments with mutilated legs (arrow). 3. Beetles attacking different ventral parts of the millipede. 4. Adult of C. lucreciae, dorsal habitus. / Canthon lucreciae alimentándose de un individuo del milpiés Messicobolus magnificus. 1. Atacando directamente en la abertura de la herida.2. Parte ventral del milpiés mostrando diplosegmentos con patas mutiladas (flecha). 3. Escarabajos atacando diferentes partes ventrales del milpiés. 4. Adulto de C. lucreciae, hábito dorsal.
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Allen Brain Atlas
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