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130
datasets available to search
ShareScore release 0.7.1
Dataset results
130 results for “whole-genome sequencing”
Whole-genome mapping of 5-hydroxymethylcytosine at single-base resolution by double-stranded DNA deamination sequencing
GEO Series GSE275113. Mus musculus. 3 samples. Type: Methylation profiling by high throughput sequencing.
Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data
GEO Series GSE77961. Mus musculus. 16 samples. Type: Methylation profiling by high throughput sequencing.
Aggregated variant data from whole-genome sequenced tinnitus patients (TIGER)
<p>Aggregated variant data obtained from tinnitus patients from Sweden.</p> <p>Uploaded datasets are storage in annotated csv files. Annotation was performed using VEP (v106), including population frequencies for each variant from gnomAD, non-finnish Europeans from gnomAD, and swedish population from SweGen project. Pathogenicity scores from CADD are also annotated for each variant. Variants from genes found to be enriched in a gene burden analysis can be found in this aggregated dataset.</p> <p><strong>agg.tiger.csv</strong> - TIGER cohort is composed by 97 swedish whole-genome sequenced constant tinnitus patients.</p> <p><strong>agg.jaguar.csv</strong> - JAGUAR cohort is composed by 147 swedish whole-exome sequenced tinnitus patients .</p> <p><strong>agg.sevtin.csv</strong> - SEVTIN cohort is a subcohort from TIGER, with 34 WGS patients seggregating severe tinnitus phenotype.</p> <p><strong>agg.controls.csv</strong> - Controls is a swedish population cohort composed by 151 whole-exome sequenced swedish individuals.</p>
Whole-genome bisulfite sequencing (WGBS) for LKB1 overexpressing and NNMT knockdown A549 cells
GEO Series GSE307897. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
Whole-genome bisulfite sequencing (WGBS) of Medicago truncatula developmental and mature embryos at four seed developmental stages produced at optimal (20°C) or heat stress conditions (26°C).
GEO Series GSE201335. Medicago truncatula. 24 samples. Type: Methylation profiling by high throughput sequencing.
Whole-genome sequencing of Extrachromosomal circular DNA (eccDNA) of cerebrospinal fluid of Medulloblastoma
GEO Series GSE205178. Homo sapiens. 9 samples. Type: Other.
High concordance between SNPs identified by the porcine 60K BeadChip genotyping array (Illumina) and the whole-genome sequencing
GEO Series GSE123327. Sus scrofa. 10 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Whole-genome bisulfite sequencing anaysis of PSCs
GEO Series GSE195691. Homo sapiens. 2 samples. Type: Methylation profiling by high throughput sequencing.
Profiling of DNA Methylation during RANKL Induced Osteoclastogenesis using Whole-Genome Bisulfite Sequencing
GEO Series GSE133515. Mus musculus. 3 samples. Type: Methylation profiling by high throughput sequencing.
Whole-genome sequencing of chromatin in Hacat cells overexpressing WT1
GEO Series GSE142992. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.