Find research datasets worth reusing

Data from: Spike-triggered covariance analysis reveals phenomenological diversity of contrast adaptation in the retina

When visual contrast changes, retinal ganglion cells adapt by adjusting their sensitivity as well as their temporal filtering characteristics. The latter has classically been described by contrast-induced gain changes that depend on temporal frequency. Here, we explored a new perspective on contrast-induced changes in temporal filtering by using spike-triggered covariance analysis to extract multiple parallel temporal filters for individual ganglion cells. Based on multielectrode-array recordings from ganglion cells in the isolated salamander retina, we found that contrast adaptation of temporal filtering can largely be captured by contrast-invariant sets of filters with contrast-dependent weights. Moreover, differences among the ganglion cells in the filter sets and their contrast-dependent contributions allowed us to phenomenologically distinguish three types of filter changes. The first type is characterized by newly emerging features at higher contrast, which can be reproduced by computational models that contain response-triggered gain-control mechanisms. The second type follows from stronger adaptation in the Off pathway as compared to the On pathway in On-Off-type ganglion cells. Finally, we found that, in a subset of neurons, contrast-induced filter changes are governed by particularly strong spike-timing dynamics, in particular by pronounced stimulus-dependent latency shifts that can be observed in these cells. Together, our results show that the contrast dependence of temporal filtering in retinal ganglion cells has a multifaceted phenomenology and that a multi-filter analysis can provide a useful basis for capturing the underlying signal-processing dynamics.

opencc-zeroDec 2015View details →

Data from: Data for evaluation of fast kurtosis imaging, b-value optimization and exploration of diffusion MRI contrast

Here we describe and provide diffusion magnetic resonance imaging (dMRI) data that was acquired in neural tissue and a physical phantom. Data acquired in biological tissue includes: fixed rat brain (acquired at 9.4T) and spinal cord (acquired at 16.4T) and in normal human brain (acquired at 3T). This data was recently used for evaluation of diffusion kurtosis imaging (DKI) contrasts and for comparison to diffusion tensor imaging (DTI) parameter contrast. The data has also been used to optimize b-values for ex vivo and in vivo fast kurtosis imaging. The remaining data was obtained in a physical phantom with three orthogonal fiber orientations (fresh asparagus stems) for exploration of the kurtosis fractional anisotropy. However, the data may have broader interest and, collectively, may form the basis for image contrast exploration and simulations based on a wide range of dMRI analysis strategies.

Data from: When homoplasy is not homoplasy: dissecting trait evolution by contrasting composite and reductive coding

The conceptualization and coding of characters is a difficult issue in phylogenetic systematics, no matter which inference method is used when reconstructing phylogenetic trees or if the characters are just mapped onto a specific tree. Complex characters are groups of features that can be divided into simpler hierarchical characters (reductive coding), although the implied hierarchical relational information may change depending on the type of coding (composite vs reductive). Up to now, there is no common agreement to either code characters as complex or simple. Phylogeneticists have discussed which coding method is best, but have not incorporated the heuristic process of reciprocal illumination to evaluate the coding. Composite coding allows to test 1) if several characters were linked resulting in a structure described as a complex character or trait, or 2) if independently evolving characters resulted in the configuration incorrectly interpreted as a complex character. We propose that complex characters or character states should be decomposed iteratively into simpler characters when the original homology hypothesis is not corroborated by a phylogenetic analysis, and the character or character state is retrieved as homoplastic. We tested this approach using the case of fruit types within subfamily Cinchonoideae (Rubiaceae). The iterative reductive coding of characters associated to drupes allowed us to unthread fruit evolution within Cinchonoideae. Our results show that drupes and berries are not homologous. As a consequence, a more precise ontology for the Cinchonoideae drupes is required.

Data from: Adaptive strategies in nocturnally migrating insects and songbirds: contrasting responses to wind

1. Animals that use flight as their mode of transportation must cope with the fact that their migration and orientation performance is strongly affected by the flow of the medium they are moving in, i.e. by the winds. Different strategies can be used to mitigate the negative effects and benefit from the positive effects of a moving flow. The strategies an animal can use will be constrained by the relationship between the speed of the flow and the speed of the animal's own propulsion in relation to the surrounding air. 2. Here we analyse entomological and ornithological radar data from north-western Europe to investigate how two different nocturnal migrant taxa, the noctuid moth Autographa gamma and songbirds, deal with wind by analysing variation in resulting flight directions in relation to the wind-dependent angle between the animal's heading and track direction. 3. Our results, from fixed locations along the migratory journey, reveal different global strategies used by moths and songbirds during their migratory journeys. As expected, nocturnally migrating moths experienced a greater degree of wind drift than nocturnally migrating songbirds, but both groups were more affected by wind in autumn than in spring. 4. The songbirds' strategies involve elements of both drift and compensation, providing some benefits from wind in combination with destination and time control. In contrast, moths expose themselves to a significantly higher degree of drift in order to obtain strong wind assistance, surpassing the songbirds in mean ground speed, at the cost of a comparatively lower spatiotemporal migratory precision. 5. Moths and songbirds show contrasting but adaptive responses to migrating through a moving flow, which are fine-tuned to the respective flight capabilities of each group in relation to the wind currents they travel within.

opencc-zeroDec 2015View details →

Data from: The evolution of colour pattern complexity: selection for conspicuousness favours contrasting within-body colour combinations in lizards

Many animals display complex colour patterns that comprise several adjacent, often contrasting colour patches. Combining patches of complementary colours increases the overall conspicuousness of the complex pattern, enhancing signal detection. Therefore, selection for conspicuousness may act not only on the design of single colour patches, but also on their combination. Contrasting long- and short-wavelength colour patches are located on the ventral and lateral surfaces of many lacertid lizards. As the combination of long- and short-wavelength-based colours generates local chromatic contrast, we hypothesized that selection may favour the co-occurrence of lateral and ventral contrasting patches, resulting in complex colour patterns that maximize the overall conspicuousness of the signal. To test this hypothesis, we performed a comparative phylogenetic study using a categorical colour classification based on spectral data and descriptive information on lacertid coloration collected from the literature. Our results demonstrate that conspicuous ventral (long-wavelength-based) and lateral (short-wavelength-based) colour patches co-occur throughout the lacertid phylogeny more often than expected by chance, especially in the subfamily Lacertini. These results suggest that selection promotes the evolution of the complex pattern rather than the acquisition of a single conspicuous colour patch, possibly due to the increased conspicuousness caused by the combination of colours with contrasting spectral properties.

Data from: Contrasting gene expression programs correspond with predator-induced phenotypic plasticity within and across-generations in Daphnia

Research has shown that a change in environmental conditions can alter the expression of traits during development (i.e., 'within-generation phenotypic plasticity') as well as induce heritable phenotypic responses that persist for multiple generations (i.e., 'transgenerational plasticity'). It has long been assumed that shifts in gene expression are tightly linked to observed trait responses at the phenotypic level. Yet, the manner in which organisms couple within- and trans-generational plasticity at the molecular level is unclear. Here we tested the influence of fish predator chemical cues on patterns of gene expression within- and across-generations using a clone of Daphnia ambigua that is known to exhibit strong transgenerational plasticity but weak within-generation plasticity. Daphnia were reared in the presence of predator cues in generation 1 and shifts in gene expression were tracked across two additional asexual experimental generations that lacked exposure to predator cues. Initial exposure to predator cues in generation 1 was linked to ~50 responsive genes but such shifts were 3-4x larger in later generations. Differentially expressed genes included those involved in reproduction, exoskeleton structure, and digestion; major shifts in expression of genes encoding ribosomal proteins were also identified. Furthermore, shifts within the first generation and transgenerational shifts in gene expression were largely distinct in terms of the genes that were differentially expressed. Such results argue that the gene expression programs involved in within- versus trans-generation plasticity are fundamentally different. Our study provides new key insights into the plasticity of gene expression and how it relates to phenotypic plasticity in nature.

Data from: Interaction between stimulus contrast and pre-saccadic crowding

Objects that are briefly flashed around the time of saccades are mislocalized. Previously, robust interactions between saccadic perceptual distortions and stimulus contrast have been reported. It is also known that crowding depends on the contrast of the target and flankers. Here, we investigated how stimulus contrast and crowding interact with pre-saccadic perception. We asked observers to report the orientation of a tilted Gabor presented in the periphery, with or without four flanking vertically oriented Gabors. Observers performed the task either following a saccade or while maintaining fixation. Contrasts of the target and flankers were independently set to either high or low, with equal probability. In both the fixation and saccade conditions, the flanked conditions resulted in worse discrimination performance—the crowding effect. In the unflanked saccade trials, performance significantly decreased with target-to-saccade onset for low-contrast targets but not for high-contrast targets. In the presence of flankers, impending saccades reduced performance only for low-contrast, but not for high-contrast flankers. Interestingly, average performance in the fixation and saccade conditions was mostly similar in all contrast conditions. Moreover, the magnitude of crowding was influenced by saccades only when the target had high contrast and the flankers had low contrasts. Overall, our results are consistent with modulation of perisaccadic spatial localization by contrast and saccadic suppression, but at odds with a recent report of pre-saccadic release of crowding.

Data from: Contrasting the roles of section length and instream habitat enhancement for river restoration success: a field study on 20 European restoration projects

1. Restoration of river hydromorphology often has limited detected effects on river biota. One frequently discussed reason is that the restored river length is insufficient to allow populations to develop and give the room for geomorphologic processes to occur. 2. We investigated ten pairs of restored river sections of which one was a large project involving a long, intensively restored river section and one represented a smaller restoration effort. The restoration effect was quantified by comparing each restored river section to an upstream non-restored section. We sampled the following response variables: habitat composition in the river and its floodplain, three aquatic organism groups (aquatic macrophytes, benthic invertebrates and fish), two floodplain-inhabiting organism groups (floodplain vegetation, ground beetles), as well as food web composition and land–water interactions reflected by stable isotopes. 3. For each response variable, we compared the difference in dissimilarity of the restored and nearby non-restored section between the larger and the smaller restoration projects. In a second step, we regrouped the pairs and compared restored sections with large changes in substrate composition to those with small changes. 4. When comparing all restored to all non-restored sections, ground beetles were most strongly responding to restoration, followed by fish, floodplain vegetation, benthic invertebrates and aquatic macrophytes. Aquatic habitats and stable isotope signatures responded less strongly. 5. When grouping the restored sections by project size, there was no difference in the response to restoration between the projects targeting long and short river sections with regard to any of the measured response variables except nitrogen isotopic composition. In contrast, when grouping the restored sections by substrate composition, the responses of fish, benthic invertebrates, aquatic macrophytes, floodplain vegetation and nitrogen isotopic composition were greater in sections with larger changes in substrate composition as compared to those with smaller changes. 6. Synthesis and applications. The effects of hydromorphological restoration measures on aquatic and floodplain biota strongly depend on the creation of habitat for aquatic organisms, which were limited or not present prior to restoration. These positive effects on habitats are not necessarily related to the restored river length. Therefore, we recommend a focus on habitat enhancement in river restoration projects.

opencc-zeroDec 2010View details →

Data from: Heterozygosity and survival in blue tits (Cyanistes caeruleus): contrasting effects of presumably functional and neutral loci

The relationship between genetic diversity and fitness has important implications in evolutionary and conservation biology. This relationship has been widely investigated at the individual level in studies of heterozygosity-fitness correlations (HFC). General effects due to inbreeding and/or local effects at single loci have been used as explanations of HFC, but the debate about the causes of HFC in open, natural populations is still ongoing. Study designs that control for variation in the inbreeding level of the individuals, and knowledge on the function and location of the markers used to measure heterozygosity, are fundamental to understand the causes of HFC. Here we investigated correlations between individual heterozygosity and estimates of survival at different life-history stages in an open population of blue tits (Cyanistes caeruleus). For survival at the embryo, nestling and fledgling stage we used a full-sibling approach, i.e. we controlled for the level of inbreeding. We genotyped 1496 individuals with 79 microsatellites distributed across 25 chromosomes in another passerine and classified either as potentially functional (58 loci) or neutral (21 loci). We found different effects of standardized multilocus heterozygosity (SH): SHfunctional had a negative effect on the probability of hatching and local recruitment of females, whereas SHneutral had a positive effect on adult survival. The negative effects of functional loci are better explained by local effects, whereas the positive effects of neutral markers could reflect inbreeding effects in the population. Our results highlight the importance of considering the characteristics of the markers used in HFC studies and confirm the mixed effects of heterozygosity in different contexts (e.g. sex and life-history stage).

Data from: Quantification and optimization of ADF-STEM image contrast for beam sensitive materials

Many functional materials are difficult to analyze by Scanning Transmission Electron Microscopy (STEM) on account of their beam sensitivity and low contrast between different phases. The problem becomes even more severe when thick specimens need to be investigated, a situation that is common for materials that are ordered from the nanometer to micrometer length scales or when performing dynamic experiments in a TEM liquid cell. Here we report a method to optimize annular dark-field (ADF) STEM imaging conditions and detector geometries for thick and beam-sensitive low-contrast specimen using the example of a carbon nanotube/polymer nanocomposite. We carried-out Monte Carlo simulations as well as quantitative ADF-STEM imaging experiments to predict and verify optimum contrast conditions. The presented method is general, can be easily adapted to other beam-sensitive and/or low-contrast materials, as shown for a polymer vesicle within a TEM liquid-cell, and can act as an expert guide on whether an experiment is feasible and to determine the best imaging conditions.

Data from: Contrasting effects of nutrient enrichment on below-ground biomass in coastal wetlands

Anthropogenically-enhanced nutrient availability is often cited among the most important drivers of altered ecosystem function and loss of services worldwide. Although the above-ground consequences of nutrient enrichment on plant growth patterns are numerous and well-documented, below-ground impacts are less clear but nonetheless critical from a global change perspective. In coastal wetlands, for example, plant-soil-nutrient dynamics directly affect the capacity to sequester carbon as soil organic matter, keep pace with sea level rise, and resist storm-induced erosion. Here, we investigate the effects of excess nutrient loading on below-ground plant growth in an oligohaline marsh fertilized for seven years with a factorial combination of nitrogen (N) and phosphorus (P). We used two common assessment procedures, the ingrowth and standing crop methods, to simultaneously quantify distinct aspects of below-ground plant growth: 1) below-ground biomass accumulation into unexploited open resource space, and 2) in situ, or maintenance, below-ground biomass of plants in equilibrium with their environment, respectively. Our objective was to determine if plant growth responses to nutrient enrichment differed depending on process and/or biomass component measured. We show that excess N concurrently increased live root biomass accumulation in ingrowth cores and reduced in situ live root standing crop. Similar, albeit non-significant, response trajectories were apparent for other below-ground biomass pools using both methods, excepting dead biomass and total standing crop. A review of previously published research supports our results and suggests that nutrient enrichment consistently has contrasting effects on below-ground plant growth depending on whether biomass accumulation or standing crop is measured, and that living biomass components are most responsive to enhanced nutrient availability. Synthesis. We conclude that eutrophic conditions can be both beneficial and detrimental to ecosystem function by either stimulating below-ground biomass accumulation in unexploited soil or reducing the below-ground standing crop required to sustain the nutritional needs of established plants in mature communities. Thus, nutrient enrichment may, in the short-term, contribute to soil organic matter (i.e., carbon) accumulation by increasing below-ground growth as plants exploit new resource space. Over the long-term, however, nutrient enrichment has the potential to negatively impact soil organic matter content as plants equilibrate to excess nutrient availability by down-regulating below-ground standing crop.

Data from: Contrasting heterozygosity-fitness correlations across life in a long-lived seabird

Selection is a central force underlying evolutionary change and can vary in strength and direction, for example across time and space. The fitness consequences of individual genetic diversity have often been investigated by testing for multi-locus heterozygosity-fitness correlations (HFCs), but few studies have been able to assess HFCs across life stages and in both sexes. Here, we test for HFCs using a 26-year longitudinal individual-based dataset from a large population of a long-lived seabird (the common tern, Sterna hirundo), where 7974 chicks and breeders of known age were genotyped at 15 microsatellite loci and sampled for life-history traits over the complete life cycle. Heterozygosity was not correlated with fledging or post-fledging prospecting probabilities, but was positively correlated with recruitment probability. For breeders, annual survival was not correlated with heterozygosity, but annual fledgling production was negatively correlated with heterozygosity in males and highest in intermediately heterozygous females. The contrasting HFCs among life stages and sexes indicate differential selective processes and emphasize the importance of assessing fitness consequences of traits over complete life histories.

opencc-zeroDec 2013View details →

Data from: Contrasting patterns of selection on the size and coloration of a female plumage ornament in common yellowthroats

Females often possess ornaments that appear smaller and duller than homologous traits in males. These ornaments may arise as nonfunctional by-products of sexual selection in males and cause negative viability or fecundity selection in females in proportion to the cost of their production and maintenance. Alternatively, female ornaments may function as signals of quality that are maintained by sexual or social selection. In a 4-year study of 83 female common yellowthroats (Geothlypis trichas) and their 222 young, we found strong viability and fecundity selection on the yellow bib, a carotenoid-based plumage ornament that is a target of sexual selection in males. Females with larger bibs were older, larger and more fecund than females with smaller bibs. However, bib size positively covaried with bib total brightness and carotenoid chroma, aspects of bib coloration that were under negative viability and fecundity selection. Females with more colourful bibs laid fewer eggs in their first clutch, were more likely to suffer total brood loss due to predation and were less likely to return to the study area. Selection against bib coloration limits the value of bib size as a quality indicator in females and may constrain the elaboration of bib attributes in males.

Data from: Marker development for phylogenomics: the case of Orobanchaceae, a plant family with contrasting nutritional modes

Phylogenomic approaches, employing next-generation sequencing (NGS) techniques, have revolutionized systematic and evolutionary biology. Target enrichment is an efficient and cost-effective method in phylogenomics and is becoming increasingly popular. Depending on availability and quality of reference data as well as on biological features of the study system, (semi-)automated identification of suitable markers will require specific bioinformatic pipelines. Here, we established a highly flexible bioinformatic pipeline, BaitsFinder, to identify putative orthologous single copy genes (SCGs) and to construct bait sequences in a single workflow. Additionally, this pipeline has been constructed to be able to cope with challenging data sets, such as the nutritionally heterogeneous plant family Orobanchaceae. To this end, we used transcriptome data of differing quality available for four Orobanchaceae species and, as reference, SCG data from monkeyflower (Erythranthe guttata, syn. Mimulus g.; 1,915 genes) and tomato (Solanum lycopersicum; 391 genes). Depending on whether gaps were permitted in initial blast searches of the four Orobanchaceae species against the reference, our pipeline identified 1,307 and 981 SCGs with average length of 994 bp and 775 bp, respectively. Automated bait sequence construction (using 2× tiling) resulted in 38,170 and 21,856 bait sequences, respectively. In comparison to the recently published MarkerMiner 1.0 pipeline BaitsFinder identified about 1.6 times as many SCGs (of at least 900 bp length). Skipping steps specific to analyses of Orobanchaceae, BaitsFinder was successfully used in a group of non-parasitic plants (three Asteraceae species and, as reference, SCG data from Arabidopsis thaliana based on previously compiled SCGs). Thus, BaitsFinder is expected to be broadly applicable in groups, where only transcriptomes or partial genome data of differing quality are available.

Data from: Validation of perfusion quantification with 3D gradient echo dynamic contrast-enhanced magnetic resonance imaging using a blood pool contrast agent in skeletal swine muscle

The purpose of our study was to validate perfusion quantification in a low-perfused tissue by dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) with shared k-space sampling using a blood pool contrast agent. Perfusion measurements were performed in a total of seven female pigs. An ultrasonic Doppler probe was attached to the right femoral artery to determine total flow in the hind leg musculature. The femoral artery was catheterized for continuous local administration of adenosine to increase blood flow up to four times the baseline level. Three different stable perfusion levels were induced. The MR protocol included a 3D gradient-echo sequence with a temporal resolution of approximately 1.5 seconds. Before each dynamic sequence, static MR images were acquired with flip angles of 5°, 10°, 20°, and 30°. Both static and dynamic images were used to generate relaxation rate and baseline magnetization maps with a flip angle method. 0.1 mL/kg body weight of blood pool contrast medium was injected via a central venous catheter at a flow rate of 5 mL/s. The right hind leg was segmented in 3D into medial, cranial, lateral, and pelvic thigh muscles, lower leg, bones, skin, and fat. The arterial input function (AIF) was measured in the aorta. Perfusion of the different anatomic regions was calculated using a one- and a two-compartment model with delay- and dispersion-corrected AIFs. The F-test for model comparison was used to decide whether to use the results of the one- or two-compartment model fit. Total flow was calculated by integrating volume-weighted perfusion values over the whole measured region. The resulting values of delay, dispersion, blood volume, mean transit time, and flow were all in physiologically and physically reasonable ranges. In 107 of 160 ROIs, the blood signal was separated, using a two-compartment model, into a capillary and an arteriolar signal contribution, decided by the F-test. Overall flow in hind leg muscles, as measured by the ultrasound probe, highly correlated with total flow determined by MRI, R = 0.89 and P = 10−7. Linear regression yielded a slope of 1.2 and a y-axis intercept of 259 mL/min. The mean total volume of the investigated muscle tissue corresponds to an offset perfusion of 4.7mL/(min ⋅ 100cm3). The DCE-MRI technique presented here uses a blood pool contrast medium in combination with a two-compartment tracer kinetic model and allows absolute quantification of low-perfused non-cerebral organs such as muscles.

opencc-zeroDec 2015View details →

Data from: It is lonely at the front: contrasting evolutionary trajectories in male and female invaders

Invasive species often exhibit rapid evolutionary changes, and can provide powerful insights into the selective forces shaping phenotypic traits that influence dispersal rates and/or sexual interactions. Invasions also may modify sexual dimorphism. We measured relative lengths of forelimbs and hindlimbs of more than 3000 field-caught adult cane toads (Rhinella marina) from 67 sites in Hawai'i and Australia (1–80 years post-colonization), along with 489 captive-bred individuals from multiple Australian sites raised in a 'common garden' (to examine heritability and reduce environmental influences on morphology). As cane toads spread from east to west across Australia, the ancestral condition (long limbs, especially in males) was modified. Limb length relative to body size was first reduced (perhaps owing to natural selection on locomotor ability), but then increased again (perhaps owing to spatial sorting) in the invasion vanguard. In contrast, the sex disparity in relative limb length has progressively decreased during the toads' Australian invasion. Offspring reared in a common environment exhibited similar geographical divergences in morphology as did wild-caught animals, suggesting a genetic basis to the changes. Limb dimensions showed significant heritability (2–17%), consistent with the possibility of an evolved response. Cane toad populations thus have undergone a major shift in sexual dimorphism in relative limb lengths during their brief (81 years) spread through tropical Australia.

Data from: Size and contrast increase the divertive effect of eyespots

Recent studies have shown that some eyespots of prey divert the strikes of predators, increasing the likelihood of prey escape. However, little is known about what makes eyespots effective divertive (deflective) prey marks. The size of eyespots varies much both between and even within taxa. Yet, whether size is important for the divertive function of eyespots is unknown. Furthermore, eyespots have often been described as highly contrasting, but the effects of contrast on the divertive function of eyespots has never been tested experimentally. Using artificial prey and the three-spined stickleback (Gasterosteus aculeatus) as a model for predator cognition and behaviour, we tested the importance of size as well as internal contrast for the divertive effect of eyespots. We independently increased the internal contrast and size of eyespots and found that both increased the divertive effect. The effect of size was significant over all four subsequent prey presentations, whereas the effect of contrast decreased after the initial presentations. These results suggest that the size and contrast of divertive marks are probably shaped by selection imposed by predation. We also discuss the involvement of predation in the seasonal and ontogenic plasticity of eyespots found in some taxa.

Data from: Trade-offs in juvenile growth potential vs. shade tolerance among subtropical rainforest trees on soils of contrasting fertility

Plant adaptation to gradients of light availability involves a well-studied functional trade-off, as does adaptation to gradients of nutrient availability. However, little is known about how these two major trade-offs interact, and thus, it remains unclear whether and how the nature of the growth–shade tolerance trade-off differs on soils of contrasting fertility. We asked whether juvenile growth–shade tolerance trade-offs differed in slope and elevation between tree assemblages on nutrient-rich basalt and nutrient-poor rhyolite soils in an Australian subtropical rain forest. We measured the growth of, and the range of light environments occupied by, juveniles (40–120 cm tall) of eight basalt specialists, six rhyolite specialists, and one generalist that was common on both substrates. In situ minimum light requirements were estimated from the 5th percentile of the distribution of naturally regenerated juveniles in relation to daily light transmittance. Stem growth was measured for 12–16 months across a wide range of light environments to estimate the light compensation point of growth of each species. Light compensation points of growth showed nearly a 1 : 1 correspondence with in situ minimum light requirements of species, indicating that whole-plant carbon balance is a key driver of ecological success in low light. Minimum light requirements were negatively correlated with relative growth rate in low light, but correlated positively with growth in high light. Soil type had no effect on either the slope or the elevation of this trade-off, all species aligning around a common growth–shade tolerance trade-off, but our results do show a wider range of growth rates and shade tolerance on the nutrient-rich basalt soil than on the nutrient-poor rhyolite. Our results suggest that adaptation to light availability involves fundamentally similar trade-offs on these two substrates of differing fertility. However, a wider range of growth rates and shade tolerance on the nutrient-rich basalt soil than on the nutrient-poor rhyolite may help to explain the higher species richness and greater structural complexity of forest stands on the former substrate.

opencc-zeroJun 2021View details →

Contrasting effects of tree origin and urbanization on invertebrate abundance and tree phenology

<p>The ongoing wide-scale introduction of non-native plants across the world may negatively influence native invertebrate fauna, due to a lack of co-evolved traits related to the novel plants, e.g. unique phytochemicals or shifted phenology. Non-native plants, specifically trees, are common in urban environments, areas that already pose novel habitats to plants and wildlife through a wide array of anthropogenic factors. For example, impervious surfaces contribute to increased ambient temperatures, the so-called urban heat island effect (UHI), which can affect local plant phenology. Yet, few studies have simultaneously studied the effects of urbanization and tree species origin on urban invertebrate communities. We measured the city-level UHI and phenology of nine native and seven non-native tree species in five city-centre parks in Southern Sweden, as well as four common native species in a rural control forest. We quantified the abundance of invertebrates on a subset of native and non-native tree species through shake-sampling, sticky-traps and frass collection. In the urban environment, non-native trees hosted significantly fewer invertebrates compared to native trees. Furthermore, the non-native trees had a delayed phenology compared to native species, while the peak of caterpillars associated with the subset of trees surveyed for this measure was significantly earlier compared to that of the native species studied. The effect of tree species origin on urban invertebrate abundance was of a greater magnitude (effect size) than the effect of urbanization on invertebrate abundance in native tree hosts. Hence, the results indicate that the impact of non-native vegetation may be a stronger driver of invertebrate declines in urban areas than other factors. As the effect of species origin on tree phenology was at a level comparable to the urban effect, increasing prevalence of non-native vegetation can potentially obscure effects of urbanization on phenology in large-scale studies, as well as induce mis-matches to invertebrate populations. Since parks harbour a large proportion of urban biodiversity, native trees play a crucial role in such habitats and should not be considered replaceable by non-native species in terms of conservation value. --</p>

Data from: UV bullseye contrast of Hemerocallis flowers attracts hawkmoths but not swallowtail butterflies

The colour and patterns of animal-pollinated flowers are known to have effects on pollinator attraction. In this study, the relative importance of flower colour and colour contrast patterns on pollinator attraction was examined in two pollinator groups, swallowtail butterflies and hawkmoths using two Hemerocallis species; butterfly-pollinated H. fulva and hawkmoth-pollinated H. citrina, having reddish and yellowish flowers in human vision, respectively. Flowers of both species have UV bullseye patterns, composed of UV-absorbing centres and UV-reflecting peripheries, known to function as a typical nectar guide, but UV reflectance was significantly more intense in the peripheries of H. citrina flowers than in those of H. fulva flowers. Comparison based on the visual systems of butterflies and hawkmoths showed that the colour contrast of the bullseye pattern in H. citrina was more intense than that in H. fulva. To evaluate the relative importance of flower colour and the colour contrast of bullseye pattern on pollinator attraction, we performed a series of observations using experimental arrays consisting of Hemerocallis species and their hybrids. As a result, swallowtail butterflies and crepuscular/nocturnal hawkmoths showed contrasting preferences for flower colour and patterns: butterflies preferred H. fulva-like coloured flower whereas the preference of hawkmoths was affected by the colour contrast of the bullseye pattern rather than flower colour. Both crepuscular and nocturnal hawkmoths consistently preferred flowers with stronger contrast of the UV bullseye pattern, whereas the preference of hawkmoths for flower colour was incoherent. Our finding suggests that hawkmoths can use UV-absorbing/reflecting bullseye patterns for foraging under light-limited environments and that the intensified bullseye contrast of H. citrina evolved as an adaptation to hawkmoths. Our results also showed the difference of visual systems between pollinators, which may have promoted floral divergence.