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Supplementary material 4 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Observed and expected heterozygosity:
Supplementary material 3 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Pearson's Chi-squared test for Hardy-Weinberg equilibrium:
Supplementary material 2 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Genotype accumulation curve:
Supplementary material 1 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Map of sampling locations:
Figure 5 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 5 - Discoloration: loss of red pigment from red-brown spots in E. dens-canis leaves. Time course of the discoloration in A adult plants (FLO and MNF), and B JUV plants.
Figure 3 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 3 - Leaf shape in new plants of E. dens-canis. Histograms of A mature non-flowering individuals (MNF) with oval (OV), shield-like (SH) and elongate (EL) leaf shapes, and B juvenile (JUV) plants with oval (OV), elongate (EL) and lanceolate (LA) leaf shapes.
Figure 4 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 4 - Different patterns of E. dens-canis leaves. A Silvery pictorial pattern (SLV-PC) characterized by red-brown (and later green) drawings on a grey-silvery background (Feb. 27, 2015) B Silvery-and-green chess-like leaves with red-brown spots (S&G-CH, Feb. 13, 2016) C Green-mottled leaves with red-brown spots (GRN-MO, Feb. 24th, 2016) D A rare rusty variant of SLV with red-brown leaves (Mt. Adone, 550 m of altitude, March 15, 2015) E A juvenile leaf with clear-silvery spots on green background (GRN-CS, April 11, 2015) F Juvenile lanceolate (JUV-LA) uniformly green (GRN-UN) leaf. Photos taken at Farneto (except D).
Figure 1 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 1 - Number of individuals of Erythronium dens-canis during spring 2015 in Farneto-C. The histograms show the number of flowering (FLO), mature non-flowering (MNF) and juvenile (JUV) plants. A New plants and B all plants.
Figure 2 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 2 - Survivorship of MNF E. dens-canis plants in March 2015. The three major cohorts are shown: Cohort 10 (in blue) with 94 new plants found on March 8th (week 10); Cohort 11 (in red) with 127 new plants found on March 12th (week 11); Cohort 12 (in green) with 82 new plants found on March 19th (week 12).
Figure 4 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 4 - Observed and expected mismatch distribution under the sudden expansions model of the control region haplotypes in J. grypotus.
Figure 3 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 3 - Minimum spanning network showing genetic relationship among mtDNA control region haplotypes in J. grypotus (Circles represent haplotypes with sizes proportional to their respective frequencies. Tick marks represent deduced numbers of nucleotide substitutions along each branch)
Figure 2 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 2 - Phylogenetic tree of control region haplotypes constructed using neighbor-joining algorithms of J. grypotus.
Figure 5 from: Zhao L, Yi D, Li C, Sun D, Xu H, Gao T (2017) Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences. ZooKeys 705: 143-158. https://doi.org/10.3897/zookeys.705.13001
Figure 5 - Bayesian skyline plots showing NefT (Nef=effective female population size; T=generation time) changes through time in J. grypotus populations. Black lines are median estimates of NefT; light lines represent the upper and lower 95% highest posterior density (HPD) limits of NefT.
THE ROLE OF THE DIGITAL ECONOMY ON THE LEVEL AND STRUCTURE OF EMPLOYMENT OF THE POPULATION
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Figure 2. – A in Landscape biogeography and population structuring of a facultatively amphidromous galaxiid fish, Galaxias brevipinnis
Figure 2. – A: Heat map of FST pairwise comparisons where red represents relatively high FST values approaching 0.15, while white and mauve represent numbers approaching closer to zero. Sites within the same catchment are denoted by a shared letter following site name. Sites located upstream of lakes are denoted by "Lake" prior to site name, whereas all other sites are located downstream of lakes. Coastal creeks and rivers that have no lake or larger catchment affiliation are denoted with "F". B: Scatter plot with trend lines of FST pairwise comparison values (n = 246 total comparisons) and riverine site distance (km), showing lake-lake (cross, dotted line), lake-coast (triangle, dashed line), and coast-coast (circle, solid line) comparisons.
Figure 1. – A in Landscape biogeography and population structuring of a facultatively amphidromous galaxiid fish, Galaxias brevipinnis
Figure 1. – A: Map of New Zealand indicating study regions; B-D: West Coast streams and lakes sampled for returning juvenile kōaro (Galaxias brevipinnis); E: Streams sampled around Lake Wakatipu; F: Streams sampled around Lake Wānaka. Genetic samples and otolith trace element signatures were obtained from fish collected from Buckler Burn, Stony Burn, 25 Mile Creek, 12 Mile Creek, Devil's Staircase Creek and 50 Mile Creek in L. Wakatipu (Panel E), and Alpha Burn, Waterfall Creek, Camp Creek, Boundary Creek, Wharf Creek in L. Wānaka (Panel F). Larval trawling was conducted near Reese River, Dart River Greenstone River, Buckler Burn in L. Wakatipu (panel E), and Makarora River, Matukituki River, Albert Burn and Boundary Creek in L. Wānaka (Panel F).
Figs. 1 A-C in Population structure of the endangered tree fern Cyathea praecincta (Cyatheaceae), endemic of the Brazilian Atlantic Forest
Figs. 1 A-C. Spatial distribution of Cyathea praecincta in an Atlantic Forest fragment in Northeastern Brazil. A. Total individuals sampled within 25m²; B. Spatial distribution of sterile C. praecincta individuals within 25m²; C. Spatial distribution of fertile of C. praecincta individuals within 25m². Ia= Aggregation index; the highly clustered pattern in the population is represented by the black patches.
FIGURE 4 in Dancing with the devil: courtship behaviour, mating evidences and population structure of the Mobula tarapacana (Myliobatiformes: Mobulidae) in a remote archipelago in the Equatorial Mid-Atlantic Ocean
FIGURE 4 | Mobula tarapacana observed in the Saint Peter and Saint Paul Archipelago. Left panelfemales with evidence of mating scars on pectoral fins. Right panel- males with evidences of mating on the claspers (swollen and/or abraded).
FIGURE 2 in Dancing with the devil: courtship behaviour, mating evidences and population structure of the Mobula tarapacana (Myliobatiformes: Mobulidae) in a remote archipelago in the Equatorial Mid-Atlantic Ocean
FIGURE 2 | Spot patterns used for photo identification of Mobula tarapacana in the Saint Peter and Saint Paul Archipelago (SPSPA).
FIGURE 1 in Dancing with the devil: courtship behaviour, mating evidences and population structure of the Mobula tarapacana (Myliobatiformes: Mobulidae) in a remote archipelago in the Equatorial Mid-Atlantic Ocean
FIGURE 1 | Geographical location of the Saint Peter and Saint Paul Archipelago (SPSPA; black triangle and inset) in the equatorial Atlantic Ocean. Red indicates Mobula tarapacana confirmed occurrences in the Atlantic Ocean (IUCN, 2019), while green squares are known occurrences in Brazilian waters.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.