Find research datasets worth reusing

Suppl. figures of otoliths of pelagic shorefish larvae captured over the Galapagos Rift for Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift

Supplementary figures of otoliths of pelagic shorefish larvae captured over the Galapagos Rift Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift in volume: Early Life History and Biology of Marine Fishes: Research inspired by the work of H Geoffrey Moser Figure Sup A1 Sagittal otolith of 5.9 mm SL Stegastes sp. fish larva (Pomacentridae) captured over the Galapagos Rift, age since hatching is 23 days.

De novo assembly of a long-read Amblyomma americanum genome (NCBI/Genbank deposited genome)

Genome assembly of Amblyomma americanum generated from PacBio HiFi sequencing of 50 individual female ticks. This repository contains the phased pseudo-haploid tick genome generated after assembly using Flye, phasing using Purge_Dups, and clean-up using custom python scripts generated in-house.  NCBI Bioproject: PRJNA932813

Suppl. figures of pelagic shorefish larvae captured over the Galapagos Rift for Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift

Supplementary figures of pelagic shorefish larvae captured over the Galapagos Rift Victor, B.C. (2023) Rapid long-distance multispecies transport of shorefish larvae to the oceanic tropical eastern Pacific, revealed by DNA-barcodes and otolith aging of larvae captured over the Galapagos Rift in volume: Early Life History and Biology of Marine Fishes: Research inspired by the work of H Geoffrey Moser Figure S1 Gobioid fish larvae captured over the Galapagos Rift. Figure S2 Labrid fish larvae captured over the Galapagos Rift. Figure S2. Pomacentrid fish larvae captured over the Galapagos Rift. Figure S4 Lythrypnus sp 5.4 mm SL fish larva captured over the Galapagos Rift. Figure S4a Lythrypnus sp 5.4 mm SL fish larva (head) captured over the Galapagos Rift. Figure S5 Abudefduf troschelii 7.3 mm SL fish larva captured over the Galapagos Rift. Figure S6 Chaetodon humeralis 8.9 mm SL fish larva captured over the Galapagos Rift. Figure S7 Gerreidae 10.6 mm SL fish larva captured over the Galapagos Rift. Figure S8 Neoniphon suborbitalis 6.8 mm SL fish larva captured over the Galapagos Rift. Figure S9 Ophioblennius steindachneri 10.6 mm SL fish larva captured over the Galapagos Rift. Figure S9a Ophioblennius steindachneri 10.6 mm SL fish larva (head) captured over the Galapagos Rift. Figure S9b Ophioblennius steindachneri 10.6 mm SL fish larva (ventral) captured over the Galapagos Rift. Figure Sup10 Sphoeroides lobatus 12.0 mm SL fish larva captured over the Galapagos Rift.

General relativistic precession and the long-term stability of the solar system: SimulationArchive dataset

We share the data for 1280 long-term solar system simulations used in <a href="https://doi.org/10.1093/mnras/stad719">Brown & Rein (2023)</a>. The simulations are zipped together consecutively in groups of 16 and saved in the <code>REBOUND</code> (3.18.1) SimulationArchive format. Please see the companion paper and <a href="https://doi.org/10.5281/zenodo.7753656">code</a> for details. Abstract The long-term evolution of the solar system is chaotic. In some cases, chaotic diffusion caused by an overlap of secular resonances can increase the eccentricity of planets when they enter into a linear secular resonance, driving the system to instability. Previous work has shown that including general relativistic contributions to the planets' precession frequency is crucial when modelling the solar system. It reduces the probability that the solar system destabilizes within 5 Gyr by a factor of 60. We run 1280 additional N-body simulations of the solar system spanning 12.5 Gyr where we allow the general relativistic precession rate to vary with time. We develop a simple, unified, Fokker-Planck advection-diffusion model that can reproduce the instability time of Mercury with, without, and with time-varying general relativistic precession. We show that while ignoring general relativistic precession does move Mercury's precession frequency closer to a resonance with Jupiter, this alone does not explain the increased instability rate. It is necessary that there is also a significant increase in the rate of diffusion. We find that the system responds smoothly to a change in the precession frequency: There is no critical general relativistic precession frequency below which the solar system becomes significantly more unstable. Our results show that the long-term evolution of the solar system is well described with an advection-diffusion model.

A Long-term Experimental Investigation on the Impact of Rainfall on Short 6G D-band Links

Data attached to Radio Science publication "A Long-term Experimental Investigation on the Impact of Rainfall  on Short 6G D-band Links"

The Long-term energy planning with highly detailed demand modelling for Egypt: an IOA-MAED-OSeMOSYS soft-linking approach

These files contain an updated model built for Egypt's power system as of 2023, with detailed demand simulation in 3 different scenarios; business as usual, high economic growth and industrial energy efficiency. Also, a multi region model built for Egypt, Sudan and Ethiopia power sector technologies for future cooperation scenarios.

Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO2 emissions

Dataset for manuscript entitled "Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO2 emissions."  Contains one spreadsheet file ("Ng et al 2023 Poison Ivy trait data.xlsx"). Note that metadata can be found in first tab.

opencc-by-4.0Jan 2022View details →

Advanced photochemical processes for the manufacture of nanopowders: an evaluation of long-term pilot plant operation

Dataset for the publication: Advanced photochemical processes for the manufacture of nanopowders: an evaluation of long-term pilot plant operation React. Chem. Eng., 2022, 7, 968–977 DOI: 10.1039/d1re00374g

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Assessment of the nesting population demography of loggerhead turtles (Caretta caretta) in La Roche Percée: first long-term monitoring in New Caledonia.

Population monitoring is essential to assess, manage and protect threatened species. Although the South Pacific loggerhead turtle subpopulation is classified as critically endangered by the IUCN, monitoring data are scarce. This study reports the results of the first long-term monitoring of the nesting population of loggerhead turtles held by Bwärä Tortues Marines on La Roche Percée beach, New Caledonia. From 2006 to 2020, Capture Mark Recapture was used to identify nesting individuals. Time and nesting success were recorded on site. A total of 452 different females were observed and tagged over 14 years. The number of different nesting individuals observed each year showed a significant increase along the timeframe of the study. A remigration interval of 3.34 years was observed and the overall nesting success was 59.02%. This study also reports the inter-nesting intervals, monthly and hourly variabilities in the visits at the nesting site. The conservation actions led by Bwärä Tortues Marines seem to be correlated with a higher nesting success. This study provides encouraging results and highlights the need to pursue the monitoring and conservation actions implemented by Bwärä Tortues Marines. Further management recommendations are also provided.

opencc-zeroApr 2023View details →

PREDICTING THE PERFORMANCE OF GREEN STORMWATER INFRASTRUCTURE USING MULTIVARIATE LONG SHORT-TERM MEMORY (LSTM) NEURAL NETWORK

The expected performance of Green Stormwater Infrastructure (GSI) is typically quantified through numerical models based on hydrologic parameters and physics-based equations. With numerical models, the choice of a spatio-temporal discretization scheme for the computational domain is a strenuous task that requires extensive calibration and potentially lab-based parameters and experimentation. The performance of GSI has high temporal dynamics due to natural, anthropogenic, and climatic processes that are not well represented by the traditional physics-based hydrologic models, which are calibrated against only a few historical observations and have a user-defined and constrained set of computational outcomes. Deep learning-based predictive models, such as Long Short-Term Memory (LSTM) neural networks, offer an exciting opportunity to quantify GSI performance, accounting for its highly dynamic and constantly evolving nature by leveraging advancements in observational data. A LSTM regression can overcome some of the limitations associated with traditional hydrological models to aid the development of a fully data-informed GSI performance predictor. To demonstrate the LSTM and traditional model outcomes, both methods were applied to a rain garden in Villanova, PA, USA. Specifically, a LSTM model was used to predict the recession of ponded water depth in the rain garden using five years of observed data.

opencc-zeroApr 2023View details →

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Data from: Long-term, not short-term, temperatures predict timing of egg-laying in European Starling (Sturnus vulgaris)

Temperature is thought to be an important supplemental cue used by female birds to time breeding. It is widely assumed that late spring temperatures, within ~1 month of egg-laying, are most predictive of laying date, consistent with the idea that temperature is used to fine-tune timing of breeding to year-specific local conditions at the time of laying. Here we show that a relatively broad, long-term, temperature window (Jan 2 – Apr 4, 92 days; r2 = 0.73) best predicted timing of egg-laying in European Starlings (Sturnus vulgaris). A "mid-winter" temperature window was also strongly correlated with laying date (r2 = 0.58) but there was no support for an influence of short-term temperatures immediately before egg-laying. We assessed the relationship between ambient temperature and timing of egg-laying using three complimentary approaches: a) an "unconstrained", exploratory analysis, b) a traditional sliding window approach, and c) specific, biologically-informed temperature windows. Our results contrast markedly with the widely held view, in the avian breeding phenology literature, that immediate, pre-breeding, temperatures best predict short-term variation in laying because they allow birds to fine-tune timing of breeding to local conditions around the time of egg-laying. This means that mechanisms that allow integration of long-term temperature information must exist in birds – perhaps most parsimoniously involving direct effects of temperature on growth of the bird's ectothermic insect prey– even though these are currently poorly characterized.

CubaPrec1: A 48 years long term gridded daily precipitation dataset at very high-resolution for Cuba.

CubaPrec1 is a new high-resolution gridded dataset for daily precipitation across Cuba from 1961-2008. The dataset was built using the information from the data series of 630 stations from the network operated by the National Institute of Water Resources. The original station data series were quality controlled using a spatial coherence process of the data, and the missing values were estimated on each day and location independently. Using the filled data series, a grid of 3 × 3 km spatial resolution was constructed by estimating daily precipitation and their corresponding uncertainties at each grid box. This new product represents a precise spatiotemporal distribution of precipitation in Cuba and provides a useful baseline for future studies in hydrology, climatology, and meteorology.

Assemblies for "Linear time complexity de novo long read genome assembly with GoldRush"

GoldRush is a de novo genome assembly algorithm with linear time complexity in the number of input long sequencing reads. We tested GoldRush on Oxford Nanopore Technologies datasets with different base error profiles describing the genomes of three human cell lines (NA24385, HG01243 and HG02055), Oryza sativa (rice), and Solanum lycopersicum (tomato). Here, we provide the assemblies for the GoldRush, Flye, Redbean and Shasta assemblies of these long read datasets.

opencc-by-4.0Feb 2023View details →

Dataset for the paper High durability and stability of 2D nanofluidic devices for long-term single-molecule sensing

Information regarding the Dataset, corresponding to the paper: “Thakur, M., Cai, N., Zhang, M. et al. High durability and stability of 2D nanofluidic devices for long-term single-molecule sensing. npj 2D Mater Appl 7, 11 (2023). https://doi.org/10.1038/s41699-023-00373-5” This folder contains the raw data and complete package of codes used to analyze, view, save, and plot data for the publication titled "High durability and stability of 2D nanofluidic devices for long-term single-molecule sensing". The code folder, "OpenNanopore-nanopore-tools", can be used to plot raw data which corresponds to the figures in the paper and supplementary information.

opencc-by-4.0Dec 2010View details →

Figs 4–7 in Aphasmaphleps, a new genus of long-legged flies from Senegal, with a key to the genera of Afrotropical Diaphorinae (Diptera: Dolichopodidae)

Figs 4–7. Details of A. bandia sp. n.: (4–6) Tarsi: (4) fore tarsus, (5) mid tarsus laterally, (6) mid tarsus dorsolaterally; (7) Hypopygium, left lateral aspect. Abbreviations: cer – cercus, ep – epandrium, epl – epandrial lobe, hyp – hypandrium, ph – phallus, pgt – postgonite, dsur, vsur – surstylus (dorsal and ventral lobes). Scale bars: 0.2 mm (Figs 4–6), 0.3 mm (Fig. 7).

opencc-by-4.0Dec 2010View details →

Figs 8, 9 in Aphasmaphleps, a new genus of long-legged flies from Senegal, with a key to the genera of Afrotropical Diaphorinae (Diptera: Dolichopodidae)

Figs 8, 9. Habitus of Falbouria acorensis (Parent, 1933) and its head, holotype. Scale bars: 1 mm (Fig. 8), 0.5 mm (Fig. 9).

opencc-by-4.0Dec 2010View details →

Figs 1−3. A in Aphasmaphleps, a new genus of long-legged flies from Senegal, with a key to the genera of Afrotropical Diaphorinae (Diptera: Dolichopodidae)

Figs 1−3. A. bandia sp. n.: (1) habitus, (2) wing, (3) head. Scale bars: 0.5 mm (Fig. 1), 0.2 mm (Figs 2, 3).

opencc-by-4.0Dec 2008View details →

Figs 8, 9 in Meuffelsia, a new genus of long-legged flies from South Africa, with a key to Afrotropical peloropeodine and allied genera (Diptera: Dolichopodidae)

Figs 8, 9. Meuffelsia manningi Grichanov, sp. n., hypopygium, left and right lateral aspects. Scale bar = 0.1 mm.

opencc-by-4.0Dec 2008View details →

Figs 2–6 in Meuffelsia, a new genus of long-legged flies from South Africa, with a key to Afrotropical peloropeodine and allied genera (Diptera: Dolichopodidae)

Figs 2–6. Details of Meuffelsia erasmusorum Grichanov, sp. n.: (2) antenna; (3) wing; (4) oviscapt, dorsal aspect; (5, 6) hypopygium, left and right lateral aspects. Scale bars: 0.5 mm in Fig. 3, otherwise 0.1 mm.