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6,234 results for “phenotypes”
Supplemental Material from: Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs
<p>Supplemental data from: <strong>Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs</strong></p>
Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs: Supplemental Material
<p>Supplemental Material from: Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs</p>
Supplemental Material from: Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs
<p>Supplemental Data from "Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes with Different Treatment Needs"</p>
Phenotypic landscape of schizophrenia-associated genes defines candidates and their shared functions - behavior data
<p>Processed behavior data for all zebrafish behavior runs included in manuscript. This includes data such as bouts / minute. The raw data used to generate this processed output is available upon request (too large for any public repository). These files can be used to generate all statistics and graphs using the script statsandgraphs.py (https://github.com/sthyme/ZFSchizophrenia/tree/master/BehaviorAnalysis). Each directory also contains scripts used, genotyping information, and output files for the statistical analyses presented in the manuscript.</p>
Supporting data and code for: Dissecting the transcriptomic basis of phenotypic evolution in the aquatic keystone grazer Daphnia: Part I
<p>Main codes for Dissecting the transcriptomic basis of phenotypic evolution in the aquatic keystone grazer Daphnia.</p>
High-throughput phenotyping of salt-stress responses of the selected Arabidopsis hormone mutants
<p>This data was collected using Hight Throughput Phenotyping machine (psi.cz) purchased by KAUST in January 2018. The plants were germinated and grown under 12/12 light/dark light regime, 22C, 60% humidity for two weeks. After two weeks, half of the plants were exposed to approximately 100 mM NaCl (protocol described in Awlia et al., 2016, Frontiers in Plant Sci, <a href="https://doi.org/10.3389/fpls.2016.01414">https://doi.org/10.3389/fpls.2016.01414</a>). The rosettes of the plants were subsequently phenotyped using the Thermal Camera, RGB, and Chlorophyll Fluorescence camera (in this order). Chlorophyll fluorescence was measured after 15 minutes of dark adaptation using the "LightCurve2" protocol. </p> <p>The description of the traits is available in the notebook available at <a href="https://github.com/mmjulkowska/PSI_notebook">https://github.com/mmjulkowska/PSI_notebook</a> </p>
FIGURE 5 in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 5. Plots of effective size trends through time generated by Vareff. The x-axis represents time to the past expressed as the product of the generation time (T) by the mutation rate. The y-axis represents the effective size expressed as the log10 of theta, where theta = 4Neu. For abbreviations, see Fig. 1.
FIGURE 1 in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 1. Geographic location of the 15 naturally occurring vernal pools sampled in Baja California, México. The main map
FIGURE 7 in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 7. Phenotypic traits variation between sexes of B. sandiegonensis individuals in Baja California, México. Asterisks indicates significant differences between sexes at the P<0.0001 level.
FIGURE 6 in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 6. Phenotypic trait variation of B. sandiegonensis individuals across the four geographic regions sampled in Baja California. Data with different uppercase letters are significantly different at the P<0.05 level, according to Tukey post-hoc tests. For abbreviations, see Fig. 1.
FIGURE 3. a in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 3. a, Bayesian phylogenetic tree of B. sandiegonensis based on analysis of mitochondrial COI sequences, showing the two major clades: Clade A and Clade B (sensu Bohonak 2005). The 31 samples obtained in this study are denoted by rectangles, with colors corresponding to the region of collection. The 54 sequences downloaded from GenBank lack colored rectangles, and all are from the northern portion of the species' range in the USA (GenBank accession numbers: FJ439689-FJ439743). The tree was rooted with Branchinecta lynchi (GenBank accession numbers HM568501-HM568505). Numbers on branches indicate Bayesian posterior probabilities ≥0.8. b, Median-joining haplotype network based on 568 bp of the mitochondrial COI sequences. Circle size is proportional to haplotype frequencies; line length is roughly proportional to the estimated number of steps between haplotypes. Each geographic region is represented in a different color. For abbreviations, see Fig. 1.
FIGURE 2 in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 2. Definition of the six morphometric traits measured on 232 individuals of B. sandiegonensis. Drawing modified from Fugate (1993) and morphometric features based on Timms (2012). a, total body length. b, thorax length. c, abdomen length. d, cercopod length. e, antennule length. f, right antenna length for males, and f1 for females.
FIGURE 4. a in Genetic and phenotypic diversity of Branchinecta sandiegonensis (Crustacea: Anostraca) in the vernal pools of Baja California, México
FIGURE 4. a, Principal components analysis of the individual genotypes, where the region was used as class factor for the analysis. Colors correspond to the region. b, Edwards genetic distance Dendrogram. The colors below names correspond to the region. c, plots of the genetic clusters inferred by STRUCTURE (K=2, 3, 4). Each vertical column represented an individual, and pools are indicated by the legend. For abbreviations, see Fig. 1.
Phenotypic Plasticity Structure of Metasequoia glyptostroboides (Taxodiaceae) Fine Adventitious Roots Adapt to Aquatic and Terrestrial Environments
<p>Supplement 1. Phellogen close to the remnant exodermis and under lysigenous primary phloem. Match to Fig. 2C, D, secondary xylem, vascular cambium (below arrowhead), phellogen (arrows), lysigenous primary phloem (black arrow), phloem aerenchyma, dilated parenchyma (*), phloem fibers, remnant exodermis (ex), staining: TBO; scale bars = 50 μm;</p> <p> </p> <p>Supplement 2. Phellogen under lysigenous primary phloem. Match to Fig. 2C, D, secondary xylem, vascular cambium (below arrow), phellogen (arrows), lysigenous primary phloem (black arrow), cortical aerenchyma, dilated parenchyma (*), phloem fibers, remnant exodermis (ex), staining: TBO; scale bars = 50 μm;</p>
Fig. 12 in Tracking the variability of phenotypic traits on a molecular phylogeny: an example from scolopendrid centipedes in peninsular India
Fig. 12 Leg pair exhibiting the transition between two tarsal spurs and one tarsal spur mapped onto phylogeny of Indian Digitipes
Fig. 7 in Tracking the variability of phenotypic traits on a molecular phylogeny: an example from scolopendrid centipedes in peninsular India
Fig. 7 Presence of pore field close to dorsal margin of the coxopleuron mapped onto phylogeny of Indian Digitipes
Fig. 6 in Tracking the variability of phenotypic traits on a molecular phylogeny: an example from scolopendrid centipedes in peninsular India
Fig. 6 Presence of complete longitudinal median ridge on the tergites mapped onto phylogeny of Indian Digitipes
Fig. 1 Digitipes from the Western Ghats, India. a, d, g, h D in Tracking the variability of phenotypic traits on a molecular phylogeny: an example from scolopendrid centipedes in peninsular India
Fig. 1 Digitipes from the Western Ghats, India. a, d, g, h D. coonoorensis; b, c D. barnabasi; e D. jonesii; f D. jangii. a character 1 (number of glabrous antennal articles), scale 0.5 mm; b character 5 (pore field close to dorsal margin of coxopleuron), scale 0.25 mm; c characters 2 (complete paramedian sutures), 3 (complete margination), and 4 (complete longitudinal median ridge on tergites), scale 1 mm; d character 6 (lateral spine on coxopleuron), scale 0.55 mm; e characters 8 (number of VM spines on prefemur) and 9 (number of VL spines on prefemur), scale 1 mm; f character 7 (number of DM spines on prefemur), scale 1 mm; g character 10 (transition from two to one tarsal spur), scale 0.5 mm; h character 11 (tarsal spur on leg 20), scale 1 mm
Fig. 3 in Phenotypic influences on the reproductive strategy of the facultative sexual rotifer Brachionus rubens (Monogononta)
Fig. 3 Percentage of sexual offspring as a function of their birth rank for three different treatments (food, temperature, and acclimation) and all combinations thereof. Bars in black represent significant deviations from the expected percentage of sexual offspring across a given treatment (continuous line) by falling outside the 95% confidence intervals of this value for that rank (dashed line; lower limit is zero if not visible)
Fig. 2 in Using haplotype networks, estimation of gene flow and phenotypic characters to understand species delimitation in fungi of a predominantly Antarctic Usnea group (Ascomycota, Parmeliaceae)
Fig. 2 Enlargement of the Usnea aurantiaco-atra group of the Bayesian inference (Fig. 1) depicting 101 taxa. Posterior probabilities ≥ 0.95 are visualized by bold branches. Colors match the sampling site colours in Fig. 4a. A! fertile specimen with apothecia, S! vegetative reproduction via soralia. Most important clades of the nested clade analysis (Fig. 4a,b) are plotted on the phylogenetic tree
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.