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PROCRAFT Final Meeting - Choice of restoration or renovation of WWII aircraft paintwork, illustrated by two case studies Bristol Bolingbroke and Messerschmitt 163B Komet by Thilo Bürgel, National Museum of Flight
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Linking diet switching to reproductive performance across populations of two Critically Endangered mammalian herbivores
<p>Data associated with Harvey Sky, N., Britnell, J., Antwis, R. <em>et al.</em> Linking diet switching to reproductive performance across populations of two critically endangered mammalian herbivores. <em>Commun Biol</em> <strong>7</strong>, 333 (2024). https://doi.org/10.1038/s42003-024-05983-3</p> <p>The data deposited here includes raw metabarcoding output fasta files and some processed metabarcoding and sample data in xslx files. We include a more detailed description of each file below.</p> <p>Data regarding Kenyan black rhino and Grevy’s zebra are treated as sensitive and confidential. There are therefore restrictions on the data that we can make available. Due to these confidentiality considerations, the sample data stored here does not include locations of sample collection within each reserve for either species, or the identity or breeding data for black rhino. It also only includes the final processed values for NDVI and rainfall. The remote sensing data is available from the repositories cited in the methods, but we cannot provide the shapefiles or other data used to calculate the final values for each sample. </p> <p><em><strong>Raw fasta files_plants.zip</strong></em></p> <p>A zipped folder containing the raw fasta files which were the output from the MiSeq sequencing of dietary plants in the faecal samples for both black rhino and Grevy's zebra. Within the zipped folder, the first part of the title of each fasta.gz file is the sample code (S1, S2, S3 etc), which allows you to cross reference these files with the sample data and processed sequencing data in the xslx files. Files with R1 in the title are foward reads, and R2 are reverse reads. </p> <p><em><strong>Raw fasta files_bacteria.zip</strong></em></p> <p>A zipped folder containing the raw fasta files which were the output from the MiSeq sequencing of microbiome bateria in the faecal samples for both black rhino and Grevy's zebra. Within the zipped folder, the first part of the title of each fasta.gz file is the sample code (S1, S2, S3 etc), which allows you to cross reference these files with the sample data and processed sequencing data in the xslx files. Files with R1 in the title are foward reads, and R2 are reverse reads. </p> <p><em><strong>Sample data and processed metabarcoding data_Black rhino.xlsx</strong></em></p> <p><em>Sample data tab</em></p> <p>The data that we are able to share that is associated with each black rhino sample.</p> <p>SampleID - The code used to identiy each sample which allows it be cross-referenced with other tabs and the fasta files. </p> <p>IndividualID - We are not able to share rhino names or other identifiers, but we have given each individual a unique number so that it can be seen which samples came from the same individuals. </p> <p>NDVI - Mean NDVI of each individual's area of utilisation in the 10-day period within which the sample was collected. The method used to calculate this is described in the methods of the article. </p> <p>Rainfall - Cumulative rainfall over the 30 days previous to sample collection for the 0.05 degree pixel under the sample. The method used to calculate this is described in the methods of the article. </p> <p>Season - Post is the post-rain sampling season June-July 2018. Pre is the pre-rain sampling season January-March 2019. </p> <p>Reserve - The reserve that the sample was collected on. </p> <p>Date - The date of sample collection. </p> <p>Dietary breadth - Shannon-Wiener index of dietary alpha diversity. The method used to calculate this is described in the methods of the article. NA signifies that the number of reads returned for that sample was under the threshold that signified sequencing failure for the dietary plant metabarcoding.</p> <p>Poaceae, Fabaceae, Ebenaceae - The relative abundance of each of these three dietary plant families that were the focus of our analyses. The method used to calculate these is described in the methods of the article. NA signifies that the number of reads returned for that sample was under the threshold that signified sequencing failure for the dietary plant metabarcoding.</p> <p><em>Bacteria numbers of reads</em></p> <p>The number of reads assigned to each bacterial ASV found in each sample. </p> <p><em>Bacteria sequences and reads</em></p> <p>The sequence of each ASV, and the taxa assigned to each sequence in the microbiome metabarcoding. The method for taxonomic assignment is described in the methods of the article. </p> <p><em>Plant numbers of reads</em></p> <p>The number of reads assigned to each dietary plant ASV found in each sample. </p> <p><em>Plant sequences and reads</em></p> <p>The sequence of each ASV, and the taxa assigned to each sequence in the dietary plant metabarcoding. The method for taxonomic assignment is described in the methods of the article. </p> <p> </p> <p><em><strong>Sample data and processed metabarcoding data_Grevy's zebra.xlsx</strong></em></p> <p><em>Sample data tab</em></p> <p>The data that we are able to share that is associated with each Grevy's zebra sample.</p> <p>Sample ID - The code used to identiy each sample which allows it be cross-referenced with other tabs and the fasta files. </p> <p>NDVI - Mean NDVI of each individual's area of utilisation in the 10-day period within which the sample was collected. The method used to calculate this is described in the methods of the article. </p> <p>Rainfall - Cumulative rainfall over the 30 days previous to sample collection for the 0.05 degree pixel under the sample. The method used to calculate this is described in the methods of the article. </p> <p>Reserve - The reserve that the sample was collected on. </p> <p>Season - Post is the post-rain sampling season July-August 2018. Pre is the pre-rain sampling season January-February 2019. </p> <p>Date - The date of sample collection. </p> <p>Dietary breadth - Shannon-Wiener index of dietary alpha diversity. The method used to calculate this is described in the methods of the article. </p> <p>Poaceae, Fabaceae - The relative abundance of each of these two dietary plant families that were the focus of our analyses. The method used to calculate these is described in the methods of the article. NA signifies that the number of reads returned for that sample was under the threshold that signified sequencing failure for the dietary plant metabarcoding.</p> <p>Indigofera - The relative abundance of each of this Fabaceae genus was included in our analyses. The method used to calculate these is described in the methods of the article. NA signifies that the number of reads returned for that sample was under the threshold that signified sequencing failure for the dietary plant metabarcoding.</p> <p><em>Bacteria numbers of reads</em></p> <p>The number of reads assigned to each bacterial ASV found in each sample. </p> <p><em>Bacteria sequences and reads</em></p> <p>The sequence of each ASV, and the taxa assigned to each sequence in the microbiome metabarcoding. The method for taxonomic assignment is described in the methods of the article. </p> <p><em>Plant numbers of reads</em></p> <p>The number of reads assigned to each dietary plant ASV found in each sample. </p> <p><em>Plant sequences and reads</em></p> <p>The sequence of each ASV, and the taxa assigned to each sequence in the dietary plant metabarcoding. The method for taxonomic assignment is described in the methods of the article. </p> <p> </p>
Fig. 3. Diplectanum timorcanthus n in Description of two new species of Diplectanum Diesing, 1858 (Monogenea: Diplectanidae) collected from Protonibea diacanthus (Lacep`ede, 1802) (Teleostei: Sciaenidae) from waters off northern Australia
Fig. 3. Diplectanum timorcanthus n. sp. A, Full body; C and E, Haptoral structures. Diplectanum diacanthi n. sp. B, Full body; D and F, Haptoral structures.
Fig. 2. Diplectanum timorcanthus n in Description of two new species of Diplectanum Diesing, 1858 (Monogenea: Diplectanidae) collected from Protonibea diacanthus (Lacep`ede, 1802) (Teleostei: Sciaenidae) from waters off northern Australia
Fig. 2. Diplectanum timorcanthus n. sp. characters of morphological significance. A, MCO; B, Squamodisc; C, Ventral Bar; D, Dorsal Bar; E, Ventral and Dorsal Anchors.
Fig. 5 in Two new Malthodes and a new Podistra from Eocene Baltic amber (Coleoptera, Cantharidae)
Fig. 5. Malthodes (Libertimalthodes) headsi sp. nov. INHSP-18001 in Baltic amber. Drawing of last urites (lateral view)
Figure 12. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 12. Amutatiola macroventosa n. gen. & n. sp.: a, spermatophore, holotype (MOV F80081) Spermatophore length, 3.55 mm (insets: i, close-up of oral cap; ii, close-up of cement body); b, Bursa copulatrix, paratype 1 (MOV F275293; black scale: 1 mm/division) (lflc: left funnel locking cartilage; lg: left gill); arrow points to the bursa copulatrix entrance.
Figure 2. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 2. Dextrasepiola taenia n. gen. & n. sp., female, paratype 1 (MOV F91359): a, dorsal view; b, ventral view; c, oral view of arm crown showing sucker arrangements of female.
Figure 5. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 5. Dextrasepiola taenia n. gen. & n. sp. (grids in background: 1 mm × 1 mm): a, spermatophore from the holotype (MOV F80458); b, close-up of cement body; c, bursa copulatrix, paratype 1 (MOV F31359; bc: bursa copulatrix; rg: right gill; rsf: right side of funnel); d, bursa copulatrix, juvenile (MOV F31360; bc: bursa copulatrix; lflc: left funnel locking cartilage; rflc: right funnel locking cartilage; rg: right gill); e, bursa copulatrix, paratype 3 (MOV F31361; bc: bursa copulatrix; lsf: left side of funnel; ms: mantle septum; rsf: right side of funnel); f, close-up of a portion of e, arrow points to opening of bursa copulatrix.
Figure 9. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 9. Amutatiola macroventosa n. gen. & n. sp. male, paratype 5 (MOV F158244). Oral views of arms (grids in background: 1 mm × 1 mm): a, right arm I; b, right arm II; c, right arm III; d, right arm IV; e, left arm I; f, left arm II; g, left arm III; h, left arm IV.
Figure 11. Amutatiola macroventosa n.gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 11. Amutatiola macroventosa n.gen. & n.sp. (grids in background: 1 mm × 1 mm): a, right tentacular club, male, paratype 5 (MOV F158244); b, photophores (p), male, paratype 5 (MOV F158244); c, lateral view of upper beak, female, paratype 1 (MOV F275293); d, lateral view of lower beak, female, paratype 1 (MOV F275293); e, top view of lower beak, female, paratype 1 (MOV F275293); f, radula, female, paratype 1 (MOV F275293).
Figure 10. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 10. Amutatiola macroventosa n. gen. & n. sp. Sucker ring dentition (grids in background: 1 mm × 1 mm): a, left arm IV of male, paratype 5 (F158244) showing normal (non-enlarged) suckers near arm tip; b, right arm III of male, paratype 5 (F158244) showing sucker ring of enlarged suckers; c, d, normal sucker of left arm II of male, paratype 5 (F158244); e, left arm I of male, paratype 5 (F158244) showing enlarged suckers; f, an enlarged sucker of e showing sucker ring; g, dorsal view of female (F275296) showing non-enlargement of suckers; h, ventral view of female (F275296) showing non-enlargement of suckers; i, arm crown of female (F275296) showing non-enlargement of suckers; j, close-up of a portion of an arm of i showing sucker ring dentition.
Figure 4. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 4. Dextrasepiola taenia n. gen. & n. sp. (grids in background: 1 mm × 1 mm): a, left tentacular club, female, paratype 3 (MOV F91361); b, inside mantle cavity: photophores (p), left gill (lg), male, holotype (MOVF80458); c, radula (paratype 1, MOV F91359); d, lateral view of upper beak (MOV F91361); e, lateral view of lower beak (MOV F91361); f, top view of lower beak (MOV F91361).
Figure 1. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 1. Dextrasepiola taenia n. gen. & n. sp., male: a, dorsal view, holotype (MOV F80458); b, ventral view (MOV F80458); c, lateral view (MOV F80458); d, hectocotylised arm (right arm I; MOV F80458); e, diagram of the hectocotylised arm showing tape-like modification, paratype 2 (MOV F74469; drawn by T. Okutani); f, inside mantle cavity, showing photophores (p) and other organs (MOV F80458); g, diagram of opened funnel and inside mantle cavity showing dorsal funnel organ (dfo), ventral funnel organ (vfo) and photophores (p; MOV F80458; drawn by T. Okutani).
Figure 7. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 7. Amutatiola macroventosa n. gen. & n. sp. male, paratype 7 (MOV F275295; grids in background: 1 mm × 1 mm): a, dorsal view; b, ventral view; c, arm crown showing arm sucker arrangement; d, lateral view.
Figure 3. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 3. Dextrasepiola taenia n. gen. & n. sp. male, paratype 2 (MOV F74469). Oral view of arms (grids in background: 1 mm × 1 mm): a, right arm I, arrow points to remnant of a tiny sucker; b, right arm II; c, right arm III; d, right arm IV; e, left arm I; f, left arm II; g, left arm III; h, left arm IV.
Figure 8. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 8. Amutatiola macroventosa n. gen. & n. sp.: a, dorsal view, female, paratype 1 (MOV F275293); b, ventral view, female, paratype 1 (MOV F275293); c, arm crown showing arm sucker arrangement, female, paratype 1 (MOV F275293); d, diagram of funnel locking cartilage, female, paratype 1 (MOV F275293; drawn by T. Okutani); e, diagram of funnel organs, male, paratype 3 (MOV F80083; drawn by T. Okutani).
Figure 13 in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 13. Distributional map of Dextrasepiola taenia n. gen. & n. sp. (blue) and Amutatiola macroventosa n. gen. & n. sp. (red).
Figure 6. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 6. Amutatiola macroventosa n. gen. & n. sp. male, holotype (MOV F80081): a, dorsal view; b, ventral view; c, lateral view; d, inside mantle cavity showing funnel locking cartilages, partial photophores; e, diagram of photophores (p; drawn by T. Okutani); f, arm crown showing arm sucker arrangement; g, diagram of arm crown showing sucker arrangement (drawn by T. Okutani); h, diagram of arm IV showing sucker arrangement (drawn by T. Okutani).
Figures 38–43 in Two further species groups and new species among Australian Hydrobiosella Tillyard: new species from south-eastern Australia (Trichoptera: Philopotamidae)
Figures 38–43. Hydrobiosella spp. Female genitalia (part segment VIII) in lateral view; 38, Hydrobiosella bandabanda sp. nov.; lateral; 38a, Hydrobiosella bandabanda sp. nov. (variant) lateral; 39, Hydrobiosella tiarka sp. nov.; lateral; 40, Hydrobiosella tarrong sp. nov.; lateral; 41 Hydrobiosella jirrima sp. nov.; lateral; 42, Hydrobiosella bifurca sp. nov.; lateral; 43, Hydrobiosella bos sp. nov
Figures 8–16 in Two further species groups and new species among Australian Hydrobiosella Tillyard: new species from south-eastern Australia (Trichoptera: Philopotamidae)
Figures 8–16. Hydrobiosella spp.; male genitalia in dorsal, lateral and part ventral views; 8–10, Hydrobiosella tarrong sp. nov.; 8, dorsal, 9, lateral, 10, ventral, mesodistal margin of segment IX; 11–13, Hydrobiosella jibbor sp. nov.; 11, dorsal; 12, lateral; 13, ventral, mesodistal margin of segment IX; 14–16, Hydrobiosella jirrima sp. nov.; 14, dorsal; 15, lateral; 16, ventral, mesodistal margin of segment IX.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.