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Biochar Technologies at the Energy-Food nexus in sub-Saharan Africa: A unique window for Climate-Smart Agriculture
<p>Dataset to support the publication</p>
The influence of nutrient enrichment on riverine food web function and stability
<p>Nutrient enrichment of rivers and lakes has been increasing rapidly over the past few decades, primarily because of agricultural intensification. Although nutrient enrichment is known to drive excessive algal and microbial growth, which can directly and indirectly change the ecological community composition, the resulting changes in food web emergent properties are poorly understood. We used ecological network analysis (ENA) to examine the emergent properties of 12 riverine food webs across a nutrient enrichment gradient in the Manawatu, New Zealand. We also derive Keystone Sensitivity Indices to explore whether nutrients change the trophic importance of species in a way that alters the resilience of the communities to further nutrient enrichment or floods. Nutrient enrichment resulted in communities composed of energy inefficient species with high community (excluding microbes) respiration. Community respiration was several times greater in enriched communities and this may drive hypoxic conditions even without concomitant changes in microbial respiration. Enriched communities exhibited weaker trophic cascades, which may yield greater robustness to energy flow loss. Interestingly, enriched communities were also more structurally and functionally affected by species sensitive to flow disturbance making these communities more vulnerable to floods. </p>
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008). in Muridae
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008).
Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015). in Muridae
Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015).
Deccan region, Madras, India. Genus Vandeleuria is masculine, so widely used specific name oleracea has been changed for gender agreement. Vandeleuria oleraceusis possibly a composite of species. Polytypic, but subspecific taxonomy requires reassessment. Distribution. Widespread in S Asia (India, Nepal, Bhutan, Bangladesh, and Sri Lan-ka), S China (W & S Yunnan), and mainland SE Asia N of the Isthmus of Kra. Descriptive notes. Head-body 68 mm, tail 105 mm, ear 13 mm, hindfoot 17 mm; weight 10 g. The Indomalayan Long-tailed Climbing Mouse is small, with flat nail on outer finger and outertoe; tail is slender, brown, twice as long as head-body length, and lacks distal tuft. Dorsal pelageis silky and salmon in color; venter is white, with fulvous hues. Habitat. Tall cane and tangled vines in primary and secondary forest such as bamboo forest, moist deciduous forest, temperate forests, montane wet zone, and disturbed secondary forests, and perhaps agricultural areas at elevations of 150-1500 m. Food and Feeding. Indomalayan [Long-tailed Climbing Mice eat fruits, buds, and flowers. Breeding. Litters of the Indomalayan Long-tailed Climbing Mouse have 3-6 young. Activity patterns. Indomalayan Long-tailed Climbing Mice are arboreal and nocturnal, although one individual was caught duringthe day. Movements, Home range and Social organization. Indomalayan Long-tailed Climbing Mice build nests in tall bushes or cane to rear their young. Status and Conservation. Classified as Least Concern on The IUCN Red Last (as V. olacea). The Indomalayan Long-tailed Climbing Mouse occurs in several habitats and a wide distribution that includes national parks. Further taxonomical studies are required to assess conservation status ofthis potentially diverse species complex. Bibliography. Corbet & Hill (1992), Dang Huy Huynh et al. (1994), Ellerman (1941), Marshall (1977b), Musser & Carleton (2005), Osgood (1932), Phillips (1980), Wang Yingxiang (2003). in Muridae
Deccan region, Madras, India. Genus Vandeleuria is masculine, so widely used specific name oleracea has been changed for gender agreement. Vandeleuria oleraceusis possibly a composite of species. Polytypic, but subspecific taxonomy requires reassessment. Distribution. Widespread in S Asia (India, Nepal, Bhutan, Bangladesh, and Sri Lan-ka), S China (W & S Yunnan), and mainland SE Asia N of the Isthmus of Kra. Descriptive notes. Head-body 68 mm, tail 105 mm, ear 13 mm, hindfoot 17 mm; weight 10 g. The Indomalayan Long-tailed Climbing Mouse is small, with flat nail on outer finger and outertoe; tail is slender, brown, twice as long as head-body length, and lacks distal tuft. Dorsal pelageis silky and salmon in color; venter is white, with fulvous hues. Habitat. Tall cane and tangled vines in primary and secondary forest such as bamboo forest, moist deciduous forest, temperate forests, montane wet zone, and disturbed secondary forests, and perhaps agricultural areas at elevations of 150-1500 m. Food and Feeding. Indomalayan [Long-tailed Climbing Mice eat fruits, buds, and flowers. Breeding. Litters of the Indomalayan Long-tailed Climbing Mouse have 3-6 young. Activity patterns. Indomalayan Long-tailed Climbing Mice are arboreal and nocturnal, although one individual was caught duringthe day. Movements, Home range and Social organization. Indomalayan Long-tailed Climbing Mice build nests in tall bushes or cane to rear their young. Status and Conservation. Classified as Least Concern on The IUCN Red Last (as V. olacea). The Indomalayan Long-tailed Climbing Mouse occurs in several habitats and a wide distribution that includes national parks. Further taxonomical studies are required to assess conservation status ofthis potentially diverse species complex. Bibliography. Corbet & Hill (1992), Dang Huy Huynh et al. (1994), Ellerman (1941), Marshall (1977b), Musser & Carleton (2005), Osgood (1932), Phillips (1980), Wang Yingxiang (2003).
Distribution. Now restricted to the Channel Country of SW Queensland and the Lake Eyre Basin in NE South Australia. Descriptive notes. Head-body 95-120 mm, tail 105-160 mm, ear 23-29 mm, hindfoot 32-37 mm; weight 30-50 g. The Fawn Hopping Mouse has body form typical of hopping mice, with very long hindfeet, long tail with distal brush of longer hairs, very long ears, and large protruberant eyes. Dorsal fur is of variable color, from pale pinkish fawn to gray; ventral fur white. Unlike most other hopping mice, it has no throat pouch, but males have a glandular area of naked skin on the chest. Habitat. Occurs in low shrublands and tussock grasslands on stony ("gibber") plains and claypans. Shows marked habitat segregation from the Dusky Hopping Mouse (N. fuscus), which is closely associated with sandy substrates. Food and Feeding. The Fawn Hopping Mouse is mostly granivorous, but also eats other plant material (stems, leaves) and occasionally invertebrates. It uses succulent, salt-adapted plants around edges of claypans as a source of water. Breeding. Reproduction is probably largely opportunistic and aseasonal, with high reproductive output from near-continuous breeding after periods of high rainfall; reported littersize is 1-5, most commonly three; gestation period 38-43 days for nonlactating females. Females may mature later than other hopping mice, with reproductive maturity reached at about six months. Activity patterns. Terrestrial and nocturnal. Fawn Hopping Mice shelter during day in burrow systems that are typically simpler and shallower than those of other hopping mice. Movements, Home range and Social organization. Fawn Hopping Mice generally live singly or in small groups; typically uncommon within range, but population density may increase by an order of magnitude following periods of high rainfall. Status and Conservation. Classified as Near Threatened on The IUCN Red List. The Fawn Hopping Mouse has shown marked decline in range (estimated at greater than 50%), and presumably population size, since European settlement of Australia. This is mostlikely due to predation by the introduced house cat and Red Fox (Vulpes vulpes), and to habitat degradation associated with pastoralism. Bibliography. Brazenor (1934), Burbidge et al. (2008), Finlayson (1939), Gould (1853), Jackson & Groves (2015), Murray et al. (1999), Ogilby (1892), Thomas (1921h), Van Dyck & Strahan (2008), Waite (1898), Watts & Aslin (1981), Woinarski et al. (2014), Wood Jones (1925). in Muridae
Distribution. Now restricted to the Channel Country of SW Queensland and the Lake Eyre Basin in NE South Australia. Descriptive notes. Head-body 95-120 mm, tail 105-160 mm, ear 23-29 mm, hindfoot 32-37 mm; weight 30-50 g. The Fawn Hopping Mouse has body form typical of hopping mice, with very long hindfeet, long tail with distal brush of longer hairs, very long ears, and large protruberant eyes. Dorsal fur is of variable color, from pale pinkish fawn to gray; ventral fur white. Unlike most other hopping mice, it has no throat pouch, but males have a glandular area of naked skin on the chest. Habitat. Occurs in low shrublands and tussock grasslands on stony ("gibber") plains and claypans. Shows marked habitat segregation from the Dusky Hopping Mouse (N. fuscus), which is closely associated with sandy substrates. Food and Feeding. The Fawn Hopping Mouse is mostly granivorous, but also eats other plant material (stems, leaves) and occasionally invertebrates. It uses succulent, salt-adapted plants around edges of claypans as a source of water. Breeding. Reproduction is probably largely opportunistic and aseasonal, with high reproductive output from near-continuous breeding after periods of high rainfall; reported littersize is 1-5, most commonly three; gestation period 38-43 days for nonlactating females. Females may mature later than other hopping mice, with reproductive maturity reached at about six months. Activity patterns. Terrestrial and nocturnal. Fawn Hopping Mice shelter during day in burrow systems that are typically simpler and shallower than those of other hopping mice. Movements, Home range and Social organization. Fawn Hopping Mice generally live singly or in small groups; typically uncommon within range, but population density may increase by an order of magnitude following periods of high rainfall. Status and Conservation. Classified as Near Threatened on The IUCN Red List. The Fawn Hopping Mouse has shown marked decline in range (estimated at greater than 50%), and presumably population size, since European settlement of Australia. This is mostlikely due to predation by the introduced house cat and Red Fox (Vulpes vulpes), and to habitat degradation associated with pastoralism. Bibliography. Brazenor (1934), Burbidge et al. (2008), Finlayson (1939), Gould (1853), Jackson & Groves (2015), Murray et al. (1999), Ogilby (1892), Thomas (1921h), Van Dyck & Strahan (2008), Waite (1898), Watts & Aslin (1981), Woinarski et al. (2014), Wood Jones (1925).
The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996). in Muridae
The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996).
Lophuromys stanley: is member of the L. flavopunctatus species complex and was named during partial revision of the L. aguilus species complex. It is characterized by craniometric and genetic character-istics; its skull proportions are similar to L. laticeps, and molecularly, it is similar to L. margarettae and L. zena (cytochrome-b). Lophuromys stanleyi is one of four endemic species in the Rwenzori Mountains diversity hotspot. Monotypic. Distribution. Rwenzori Mts, E DR Congo and SW Uganda. Descriptive notes. Head-body 113-126 mm, tail 40-80 mm, ear 16-19 mm, hindfoot 22-24 mm; weight 36-55 g. The Rwenzori Brush-furred Rat has a speckled pelage similar to other speciesin the L. flavopunctatus species complex. Tail is short, 50-60% of head-body length. Habitat. Poorly known, but type specimen was collected at an elevation of 3700 m. Food and Feeding. No information. Breeding. No information. Activity patterns. No information. in Muridae
Lophuromys stanley: is member of the L. flavopunctatus species complex and was named during partial revision of the L. aguilus species complex. It is characterized by craniometric and genetic character-istics; its skull proportions are similar to L. laticeps, and molecularly, it is similar to L. margarettae and L. zena (cytochrome-b). Lophuromys stanleyi is one of four endemic species in the Rwenzori Mountains diversity hotspot. Monotypic. Distribution. Rwenzori Mts, E DR Congo and SW Uganda. Descriptive notes. Head-body 113-126 mm, tail 40-80 mm, ear 16-19 mm, hindfoot 22-24 mm; weight 36-55 g. The Rwenzori Brush-furred Rat has a speckled pelage similar to other speciesin the L. flavopunctatus species complex. Tail is short, 50-60% of head-body length. Habitat. Poorly known, but type specimen was collected at an elevation of 3700 m. Food and Feeding. No information. Breeding. No information. Activity patterns. No information.
Lophuromys medicaudatus, L. woosnami, and L. luteogaster are in subgenus Kivumys and woosnami species group. Monotypic. Distribution. Endemic to the Albertine Rift, occurring around Lake Kivu in E DR Congo and Rwanda and SW Uganda (Bwindi). Descriptive notes. Head—body 92-112 mm, tail 73-95 mm, ear 15-19 mm, hindfoot 18-23 mm; weight 29-43 g. Similar to other species in subgenus Kivumys, the Western Rift Brush-furred Rat has unspeckled pelage, and tail ¢.85% of head-body length. Dorsum is uniform dark brown-olive, and venter is orange. Females have three pairs of mammae. Habitat. Mountain swamps and mountain forests at elevations of 1850-2500 m. Food and Feeding. The Western Rift Brush-furred Rat is omnivorous; diets contain 30-100% arthropods, mollusks, seeds, and fruits. Breeding. Female Western Rift Brush-furred Rats can have 1-2 embryos. Pregnant females were observed in February, April, and July. Activity patterns. The Western Rift Brush-furred Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Vulnerable on The IUCN Red List. The Western Rift Brush-furred Rat has never been found in modified secondary environment and is quite rare. Bibliography. Dieterlen (1976b, 1987 2013g), Kasangaki et al. (2003), Verheyen et al. (1996). in Muridae
Lophuromys medicaudatus, L. woosnami, and L. luteogaster are in subgenus Kivumys and woosnami species group. Monotypic. Distribution. Endemic to the Albertine Rift, occurring around Lake Kivu in E DR Congo and Rwanda and SW Uganda (Bwindi). Descriptive notes. Head—body 92-112 mm, tail 73-95 mm, ear 15-19 mm, hindfoot 18-23 mm; weight 29-43 g. Similar to other species in subgenus Kivumys, the Western Rift Brush-furred Rat has unspeckled pelage, and tail ¢.85% of head-body length. Dorsum is uniform dark brown-olive, and venter is orange. Females have three pairs of mammae. Habitat. Mountain swamps and mountain forests at elevations of 1850-2500 m. Food and Feeding. The Western Rift Brush-furred Rat is omnivorous; diets contain 30-100% arthropods, mollusks, seeds, and fruits. Breeding. Female Western Rift Brush-furred Rats can have 1-2 embryos. Pregnant females were observed in February, April, and July. Activity patterns. The Western Rift Brush-furred Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Vulnerable on The IUCN Red List. The Western Rift Brush-furred Rat has never been found in modified secondary environment and is quite rare. Bibliography. Dieterlen (1976b, 1987 2013g), Kasangaki et al. (2003), Verheyen et al. (1996).
Image Dataset for 'AI-enabled biosensing for rapid pathogen detection: from liquid food to agricultural water'
<p>This dataset is presented in the following publication. Please cite this publication if you use the dataset.</p> <p><em>Jiyoon Yi, Nicharee Wisuthiphaet, Pranav Raja, Nitin Nitin, J. Mason Earles. (2023). AI-enabled biosensing for rapid pathogen detection: from liquid food to agricultural water. Water Research, 120258. doi: <a href="https://doi.org/10.1016/j.watres.2023.120258">10.1016/j.watres.2023.120258</a></em></p>
Foraging on anthropogenic food predicts problem-solving skills in a seabird
<p>Species and populations with greater cognitive performance are more successful at adapting to changing habitats. Accordingly, urban species and populations often outperform their rural counterparts on problem-solving tests. Paradoxically, urban foraging also might be detrimental to the development and integrity of animals' brains because anthropogenic foods often lack essential nutrients such as the long-chain omega-3 fatty acids eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), which are important for cognitive performance in mammals and possibly birds. We tested whether urbanization or consumption of EPA and DHA are associated with problem-solving abilities in ring-billed gulls, a seabird that historically exploited marine environments rich in omega-3 fatty acids but now also thrives in urban centres. Using incubating adults nesting across a range of rural to urban colonies with equal access to the ocean, we tested whether urban gulls preferentially consumed anthropogenic food while rural nesters relied on marine organisms. As we expected individual variation in foraging habits within nesting location, we characterized each captured gulls' diet using stable isotope and fatty acid analyses of their red blood cells. To test their problem-solving abilities, we presented the sampled birds with a horizontal rendition of the string-pull test, a foraging puzzle often used in animal cognitive studies. The isotopic and fatty acid profiles of urban nesters indicated a diet comprising primarily anthropogenic food, whereas the profiles of rural nesters indicated a high reliance on marine organisms. Despite the gulls' degree of access to urban foraging habitat not predicting solving success, birds with biochemical profiles reflecting anthropogenic food (less DHA and a higher carbon-13 ratio in their red blood cells) had a greater probability of solving the string-pull test. These results suggest that experience foraging on anthropogenic food is the main explanatory factor leading to successful problem-solving, while regular consumption of omega-3s during incubation appears inconsequential.</p>
Essential amino acid requirements of granivorous and omnivorous songbirds and the provision of natural foods
<p>Wild birds must consume certain amounts of protein and an appropriate balance of amino acids while inhabiting environments where foods often differ in the quantity and quality of available protein. The requirements for amino acids are well documented for domestic bird species but are largely unknown for wild birds, which makes it impossible to reliably assess the nutritional adequacy of foods eaten by wild birds. We measured the maintenance requirements for three essential amino acids (lysine, methionine, and arginine) in two species of songbird, the omnivorous Hermit Thrush (<i>Catharus guttatus</i>) and granivorous White-throated Sparrow (<i>Zonotrichia albicollis</i>). Hermit Thrushes and White-throated Sparrows had similar requirements for lysine (20.02 and 19.95 mg/day, respectively) and methionine (12.3 and 10.85 mg/day, respectively), whereas thrushes had lower requirements for arginine (18.07 mg/day) compared to sparrows (34.5 mg/day). Consistent with previous studies, most birds fed diets with inadequate essential amino acid concentrations reduced food intake and fecal output, lost body mass, and had lower, but not negative nitrogen balance. However, we provide the first evidence that songbirds overcompensate when they consume diets very deficient in lysine. Available data on amino acid concentrations in natural foods suggests that most insects contain relatively high concentrations of all essential amino acids, seeds likely satisfy requirements of lysine and arginine but not methionine for Hermit Thrushes and White-throated Sparrows, whereas fruits generally contain inadequate amounts of all essential amino acids. Therefore, birds that eat mostly fruit may consume enough protein but likely must eat other types of foods to satisfy their essential amino acid requirements.</p>
FIGURE 3 in Mucor tofus, a new species isolated from Mao-tofu (a fermented soybean food) in China
FIGURE 3. Morphology of Mucor tofus sp. nov. a, b. Front and reverse of colony on PDA. c, d. Front and reverse of colony on SMA. e. Lateral view of tall sporangiophores. f‒l. Tall and lateral sporangiophores with sporangia. Note that tall sporangiophores are irregular swollen when young. m‒o. Details of lateral sporangia. p‒r. Columellae with or without collars. s. Sporangiospores. Scale bars: e‒i = 500 µm, j‒l = 200 µm, m‒r = 50 µm, s =20 µm.
FIGURE 2 in Mucor tofus, a new species isolated from Mao-tofu (a fermented soybean food) in China
FIGURE 2. Phylogenetic tree depicting the relationships of Mucor tofus sp. nov. and related species based on maximum likelihood (ML) analysis of LSU rDNA. Backusella grandis and B. lamprospota were used as outgroups. Support values of maximum likelihood bootstrap proportion (MLBP), maximum parsimony bootstrap support (MPBS) and Bayesian inference posterior probability (BPP) are shown along the branches. Dash (-) indicates nodes with MLBP<70%, MPBS<70% or BPP<0.95. New taxa are in red and ex-type isolates are in bold.
FIGURE 1 in Mucor tofus, a new species isolated from Mao-tofu (a fermented soybean food) in China
FIGURE 1. Phylogenetic tree depicting the relationships of Mucor tofus sp. nov. and related species based on the maximum likelihood (ML) analysis of rDNA ITS sequences. Backusella grandis and B. lamprospota were used as the outgroups. Support values of maximum likelihood bootstrap proportion (MLBP), maximum parsimony bootstrap support (MPBS) and Bayesian inference posterior probability (BPP) are shown along the branches. Dash (-) indicates nodes with MLBP<70%, MPBS<70% or BPP<0.95. New taxa are in red and extype isolates are in bold.
SCFA food allergy map
<p>Celldesigner format for SCFA food allergy map</p>
Data for: Fast adjustment of POLS to food quality
<p><span>The pace-of-life syndrome hypothesis provides a framework for the adaptive integration of behaviour, physiology and life history at between and within species. It suggests that behaviours involving a risk of death or injury should co-vary with a higher allocation to fast reproduction. Empirical support for this hypothesis is mixed, presumably because important influencing factors such as environmental variation, are usually neglected. By experimentally manipulating the food quality of wild mice living under semi-natural conditions for three generations, we show that individuals adjust their life history strategies and risk-taking behaviours as well as trait covariation (N<sub>individuals</sub> = </span><span>1442)</span><span>. These phenotypic differences are correlated to differences in transcriptomic gene expression of primarily metabolic processes in the liver while no changes in gene frequencies occurred. Our discussion emphasizes the need to integrate the role of environmental conditions and phenotypic plasticity in shaping relationships among behaviour, physiology and life-history in response to changing environmental conditions.</span></p>
Food Seal Food Saver - Dehydrator
A food dehydrator designed to be made of metal and absorb sunlight to heat and evaporate water from food. The fan at the back contributes to this process and is powered by a lead-acid battery which can be recharged using a hand-crank. A part of our food preservation system engineered to work during WW1. Source: Objaverse 1.0 / Sketchfab
Supplementary material 2 from: Cheng S, Chan K-M, Ishak S-F, Khoo V, Chew MY (2017) Elucidating food plants of the aggregative, synchronously flashing Southeast Asian firefly, Pteroptyx tener Olivier (Coleoptera, Lampyridae). BioRisk 12: 25-39. https://doi.org/10.3897/biorisk.12.14061
Supporting Information S2. Cytochrome oxidase subunit 1 sequence alignment : Data type: molecular data
Supplementary material 1 from: Sim IMW, Wilkinson NI, Scridel D, Anderson D, Roos S (2015) Food supplementation does not increase demographic rates in a passerine species of conservation concern. Nature Conservation 10: 25-43. https://doi.org/10.3897/natureconservation.10.4556
Supplementary Information: Explanation note: Details of the models predicting adult ring ouzel provisioning rate to nestlings, fledging success, brood size at fledging in successful nests, nestling BCI at fledging, within-brood variation in nestling BCI at fledging, and juvenile survival probability for up to 100 days post-fledging.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.