Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
11,105
datasets available to search
ShareScore release 0.9.0
Dataset results
11,105 results for “single cells”
Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells (mESC data)
GEO Series GSE123586. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Single cell transcriptome atlas of the Drosophila larval brain
GEO Series GSE134722. Drosophila melanogaster. 7 samples. Type: Expression profiling by high throughput sequencing.
Single-nucleus and single-cell RNA-sequencing of human pancreatic islets
GEO Series GSE207632. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA-seq revealed critical genetic programs of invasive fibroblasts for pulmonary fibrosis
GEO Series GSE137026. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell Transcriptomic Atlas of Human Hepatic ILCs Reveals the Enrichment of ILC2 in Liver Cancer
GEO Series GSE162616. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Hypersonic Levitation and Spinning: Paving the Way for Enhanced Single-Cell Analysis via Contactless Tissue Dissociation
GEO Series GSE290412. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Single cell methylation, RNA, and ATAC sequencing of ventral hippocampal brain tissue from inbred mouse strains
GEO Series GSE245367. Mus musculus. 24 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-Cell Gene Expression Analysis of First Trimester Placenta Samples Linked to Idiopathic Recurrent Pregnancy Loss
GEO Series GSE204723. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Characterizing pancreatic β-cell heterogeneity in the streptozotocin model by single-cell transcriptomic analysis
GEO Series GSE137909. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
Single-cell ATAC-Seq of cells recruited to regenerative portions of large skin wounds.
GEO Series GSE131600. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
GEO Series GSE243256. Danio rerio. 535 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations
GEO Series GSE252090. Homo sapiens. 23 samples. Type: Other.
Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities [scRNA-Seq]
GEO Series GSE276704. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Single cell resolution analysis of multi-tissue derived human iNKT cells reveals novel transcriptional paradigms
GEO Series GSE261557. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Single Nucleus RNAseq dissection of choroid plexus tumor cell heterogeneity
GEO Series GSE264154. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Integration of single-cell transcriptomes and biological function reveals distinct behavioral patterns in bone marrow endothelial cells [bulk RNA-seq]
GEO Series GSE206975. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Single-cell mRNA profiling reveals changes in solute carrier expression and a metabolic switch during zebrafish pronephros development
GEO Series GSE162031. Danio rerio. 56 samples. Type: Expression profiling by high throughput sequencing.
Single-cell 3D genome structure reveals distinct human pluripotent states (RNA-Seq)
GEO Series GSE260994. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Human naïve pluripotent stem cells exhibit X chromosome dampening and X-inactivation (single cell RNA-Seq)
GEO Series GSE87237. Homo sapiens. 288 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiles at the single cell level of CD8+ T cells from the spleens of LCMV-Armstrong or LCMV-Clone 13 infected mice
GEO Series GSE213470. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.