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Data from: Energy and lipid metabolism during direct and diapause development in a pierid butterfly
Diapause is a fundamental component of the life-cycle in the majority of insects living in environments characterized by strong seasonality. The present study addresses poorly understood associations and trade-offs between endogenous diapause duration, thermal sensitivity of development, energetic cost of development and cold tolerance. Diapause intensity, metabolic rate trajectories and lipid profiles of directly developing and diapausing animals were studied using pupae and adults of Pieris napi butterflies from a population for which endogenous diapause is well studied. Endogenous diapause was terminated after 3 months and termination required chilling. Metabolic and postdiapause development rates increased with diapause duration, while the metabolic cost of postdiapause development decreased, indicating that once diapause is terminated development proceeds at a low rate even at low temperature. Diapausing pupae had larger lipid stores than the directly developing pupae and lipids constituted the primary energy source during diapause. However, during diapause lipid stores did not decrease. Thus, despite lipid catabolism meeting the low energy costs of the diapausing pupae, primary lipid store utilization did not occur until the onset of growth and metamorphosis in spring. In line with this finding, diapausing pupae contained low amounts of mitochondria-derived cardiolipins, which suggests a low capacity for fatty acid β-oxidation. While ontogenic development had a large effect on lipid and fatty acid profiles, only small changes in these were seen during diapause. The data therefore indicate that the diapause lipidomic phenotype is built early, when pupae are still at high temperature, and retained until diapause post-diapause development.
Data from: Columnar cacti as sources of energy and protein for frugivorous bats in a semi-arid ecosystem
Columnar cacti constitute the dominant elements in the vegetation structure of arid and semi-arid New World ecosystems representing a plethora of food resources for vertebrate consumers. Previous stable isotope analysis in Central Mexico showed that columnar cacti are of low importance to build tissue for frugivorous bats. We used carbon stable isotope analysis of whole blood and breath samples collected from four species of frugivorous bats (Sturnira parvidens, Sturnira ludovici, Artibeus jamaicensis, and Artibeus intermedius) to reconstruct the importance of cactus plants in their diet. Breath samples were collected within 10 min (B10) of bat capture and ~12 h after capture (B720), representing the oxidation of recently ingested food and of body reserves, respectively. We expected that bats relied primarily on non-cactus food to construct tissues and fuel oxidative metabolism. Non-cactus food strongly predominated for tissue building, whereas oxidative metabolism was supported by a moderate preponderance of non-cactus food for B10 samples, and a moderate preponderance of cactus food or an equal contribution of both sources for B720 samples. Artibeus and Surnira species appear to cover a narrow part of the diet with cactus food, confirming that the incorporation of nutrients derived from these plants is not generalized among vertebrate consumers.
Data from: Regulation of reproductive processes with Dynamic Energy Budgets
1. Linking organismal level processes to underlying suborganismal mechanisms at the molecular, cellular and organ level constitutes a major challenge for predictive ecological risk assessments. This challenge can be addressed with the simple bioenergetic models in the family of Dynamic Energy Budget (DEB), which consist of a small number of state equations quantifying universal processes, such as feeding, maintenance, development, reproduction and growth. 2. Motivated by the need for process-based models to evaluate the impact of endocrine disruptors on ecologically relevant endpoints, this paper develops and evaluates two general modeling modules describing demand-driven feedback mechanisms within the DEB modeling framework exerted by gonads on the allocation of resources to production of reproductive matter. 3. These modules describe iteroparous, semelparous and batch-mode reproductive strategies. The modules have a generic form with both positive and negative feedback components; species and sex specific attributes of endocrine regulation can be added without changing the core of the modules. 4. We demonstrate that these modules successfully describe time-resolved measurements of wet weight of body, ovaries and liver, egg diameter and plasma content of vitellogenin and estradiol in rainbow trout (Oncorynchus mykiss) by fitting these models to published and new data, which require the estimation of less than two parameters per data type. 5. We illustrate the general applicability of the concept of demand-driven allocation of resources to reproduction by evaluating one of the modules with data on growth and seed production of an annual plant, the common bean (Phaseolis vulgaris).
Data from: Hummingbirds budget energy flexibly in response to changing resources
1. Managing energy stores in response to variable resource availability is a key component to individual fitness, yet because directly measuring energy budgets is difficult, daily energy management is rarely measured. 2. Hummingbirds' energy management is relatively simple to model compared to other endotherms because they have high mass-specific metabolic rates and store little fat. 3. We determined which aspects of the hummingbird daily energy budget (i.e. thermoregulation, daytime activity costs, nighttime costs) change at the individual level in response to environmental variation. 4. We found that daily energy expenditure varied three-fold in two populations of broad-billed hummingbirds (Cynanthus latirostris). 5. Our model indicated the energy budget was distributed in the following proportions: daytime activity, 59% (range 22-84%); thermoregulation, 23% (11 – 32%), basal metabolism, 7% (3 – 16%), and nighttime energy 17% (6 – 37%). Activity costs were higher at the hotter, homogeneous site and during the early-wet season at both sites. 6. Increased daily energy expenditure was related to decreased nectar availability, and not significantly related to temperature or bird mass. With climate change, the indirect energetic costs of shifting resources could have greater impacts on endotherm energy budgets than direct costs such as thermoregulation. Increased foraging and activity costs could decrease the energy available to birds for somatic repair and reproduction, potentially causing differential fitness across seasons and sites.
Data from: Genomic signatures of fine‐scale local selection in Atlantic salmon suggest involvement of sexual maturation, energy homeostasis, and immune defence‐related genes
Elucidating the genetic basis of adaptation to the local environment can improve our understanding of how the diversity of life has evolved. In this study we used a dense SNP array to identify candidate loci potentially underlying fine-scale local adaptation within a large Atlantic salmon (Salmo salar) population. By combining outlier, gene–environment association, and haplotype homozygosity analyses, we identified multiple regions of the genome with strong evidence for diversifying selection. Several of these candidate regions had previously been identified in other studies, demonstrating that the same loci could be adaptively important in Atlantic salmon at sub-drainage, regional and continental scales. Notably, we identified signals consistent with local selection around genes associated with variation in sexual maturation, energy homeostasis, and immune defence. These included the large-effect age-at-maturity gene vgll3, the known obesity gene mc4r, and major histocompatibility complex II. Most strikingly, we confirmed a genomic region on Ssa09 that was extremely differentiated among subpopulations, and that is also a candidate for local selection over the global range of Atlantic salmon. This region co-localized with a haplotype strongly associated with spawning ecotype in sockeye salmon (Oncorhynchus nerka), with circumstantial evidence that the same gene (six6) may be the selective target in both cases. The phenotypic effect of this region in Atlantic salmon remains cryptic, although allelic variation is related to upstream catchment area and co-varies with timing of the return spawning migration. Our results further inform management of Atlantic salmon and open multiple avenues for future research.
Data from: Ecological relevance of energy metabolism: transcriptional responses in energy sensing and expenditure to thermal and osmotic stresses in an intertidal limpet
For rocky intertidal species that experience changes in a number of potential stressors seasonally and during the tidal cycle, sensing cellular energy status and modulating it adaptively may be crucial for responding to stressor effects. However, the responses of energy metabolism of intertidal species to multiple sublethal stressors are still unclear. Here, we examined gene expression profiles of biomarkers related to sensing of cellular energy status and regulation of catabolism and energy expenditure in a mid-intertidal limpet Cellana toreuma for elucidating the species' cellular energy responses stresses from high temperature, desiccation and rainfall. Expression levels of genes encoding metabolic regulators [two subunits of AMP-activated protein kinase, ampkα, ampkβ; Fu gene inhibition axis formation, axin; two sirtuins, NAD-dependent deacetylase sirtuin-1 (sirt1); NAD-dependent deacetylase sirtuin-5 (sirt5)], metabolic enzymes (hexokinase, hk; pyruvate kinase, pk; isocitrate dehydrogenase, idh) and heat shock protein 70 (hsp70) were quantified in specimens exposed to different temperatures and aerial/freshwater spray conditions. Based on the gene expression patterns, all individuals could be divided into three groups with divergent cellular energy status, indicating that the selected target genes are appropriate indicators of cellular metabolism. The divergent gene expression patterns indicated a sequence in which individuals from group 1, group 2 and group 3 were faced with increasing energy stress. The frequency distributions of individuals in the three groups were different among different time points and treatments, indicating that high temperature, desiccation, and rainfall, singly or in combination, could cause energy stress. Compared to the high percentage (100%) of individuals placed in the highest-stress group (group 3), after 2 h of freshwater spray at 18 °C, the lower percentage (77·8%) of individuals in group 3 after 2 h of freshwater spray at 30 °C indicated the existence of interactive effects of high temperature and rain; high temperature resulted in a lower response of cellular energy metabolism to rainfall. Sublethal environmental stresses from single stressors such as temperature or osmotic challenges can lead to cellular energy stress. Interactions among stressors may lead to a complex overall effect on cellular energy status in intertidal species.
Data from: Linking size spectrum, energy flux and trophic multifunctionality in soil food webs of tropical land-use systems
1. Many ecosystem functions depend on the structure of food webs, which heavily relies on the body size spectrum of the community. Despite that, little is known on how the size spectrum of soil animals responds to agricultural practices in tropical land-use systems and how these responses affect ecosystem functioning. 2. We studied land-use induced changes in belowground communities in tropical lowland ecosystems in Sumatra (Jambi province, Indonesia), a hotspot of tropical rainforest conversion to rubber and oil palm plantations. The study included ca. 30,000 measured individuals from 33 high-order taxa of meso- and macrofauna spanning eight orders of magnitude in body mass. Using individual body masses we calculated the metabolism of trophic guilds and used food-web models to calculate energy fluxes and infer ecosystem functions, such as decomposition, herbivory, primary and intraguild predation. 3. Land-use change was associated with reduced abundance and taxonomic diversity of soil invertebrates, but strong increase in total biomass and moderate changes in total energy flux. These changes were due to increased biomass of large-sized decomposers in soil, in particular earthworms, with their share in community metabolism increasing from 11% in rainforest to 59-76% in jungle rubber, and rubber and oil palm plantations. Decomposition, i.e. the energy flux to decomposers, stayed unchanged, but herbivory, primary and intraguild predation decreased by an order of magnitude in plantation systems. Intraguild predation was very important, being responsible for 38% of the energy flux in rainforest according to our model. 4. Conversion of rainforest into monoculture plantations is associated by an uneven loss of size classes and trophic levels of soil invertebrates resulting in sequestration of energy in large-sized primary consumers and restricted flux of energy to higher trophic levels. Pronounced differences between rainforest and jungle rubber reflect sensitivity of rainforest soil animal communities to moderate land-use changes. Soil communities in plantation systems sustained high total energy flux despite reduced biodiversity. The high energy flux into large decomposers but low energy fluxes to other trophic guilds suggests that trophic multifunctionality of belowground communities is compromised in plantation systems.
Data from: Kin effects on energy allocation in group-living ground squirrels
The social environment has potent effects on individual phenotype and fitness in group-living species. We asked whether the presence of kin might act on energy allocation, a central aspect of life-history variation. Using a 22-year data set on reproductive and somatic allocations in Columbian ground squirrels (Urocitellus columbianus), we tested the effects of co-breeding and non-breeding kin on the fitness and energy allocation balance between reproduction and personal body condition of individual females. Greater numbers of co-breeding kin had a positive effect on the number of offspring weaned, through the mechanism of altering energy allocation patterns. On average, females with higher numbers of co-breeding kin did not increase energy income but biased energy allocation towards reproduction. Co-breeding female kin ground squirrels maintain close nest burrows, likely providing a social buffer against territorial invasions from non-kin ground squirrels. Lower aggressiveness, lower risks of infanticide from female kin and greater protection of territorial boundaries may allow individual females to derive net fitness benefits via their energy allocation strategies. We demonstrated the importance of kin effects on a fundamental life-history trade-off.
Data from: Accelerometers can measure total and activity-specific energy expenditure in free-ranging marine mammals only if linked to time-activity budgets
Energy expenditure is an important component of foraging ecology, but is extremely difficult to estimate in free-ranging animals and depends on how animals partition their time between different activities during foraging. Acceleration data have emerged as a new way to determine energy expenditure at a fine scale but this needs to be tested and validated in wild animals. This study investigated whether vectorial dynamic body acceleration (VeDBA) could accurately predict the energy expended by marine predators during a full foraging trip. We also aimed to determine whether the accuracy of predictions of energy expenditure derived from acceleration increased when partitioned by different types of at-sea activities (i.e. diving, transiting, resting and surface activities). To do so, we equipped 20 lactating northern (Callorhinus ursinus) and 20 lactating Antarctic fur seals (Arctocephalus gazella) with GPS, time-depth recorders and tri-axial accelerometers and obtained estimates of field metabolic rates using the doubly labelled water (DLW) method. VeDBA was derived from tri-axial acceleration, and at-sea activities (diving, transiting, resting and surface activities) were determined using dive depth, tri-axial acceleration and travelling speed. We found that VeDBA did not accurately predict the total energy expended by fur seals during their full foraging trips (R2 = 0·36). However, the accuracy of VeDBA as a predictor of total energy expenditure increased significantly when foraging trips were partitioned by activity and when activity-specific VeDBA was paired with time-activity budgets (R2 = 0·70). Activity-specific VeDBA also accurately predicted the energy expenditures of each activity independent of each other (R2 > 0·85). Our study confirms that acceleration is a promising way to estimate energy expenditures of free-ranging marine mammals at a fine scale never attained before. However, it shows that it needs to be based on the time-activity budgets that make up foraging trips rather than being derived as a single measure of VeDBA applied to entire foraging trips. Our activity-based method provides a cost-effective means to accurately calculate energy expenditures of fur seals using acceleration and time-activity budgets, that can be transfered to studies on other species.
Data from: When do trade-offs occur? The roles of energy constraints and trait flexibility in a bushcricket
In many animal species, the expression of sexually-selected traits is negatively correlated with survival traits such as immune function, a relationship termed a 'trade-off'. But an alternative in which sexually-selected traits are positively correlated with survival traits is also widespread. The nature of inter-trait relationships may be largely determined by overall energy expenditure, energy availability, and trait flexibility, with trade-offs expected when individuals are subject to energy constraints. We tested this hypothesis in Ephippiger diurnus, a European bushcricket in which males are distinguished by two prominent sexually-selected traits, acoustic calls and a large spermatophore transferred to the female at mating, and where immune function may be critical in survival. E. diurnus are distributed as small, isolated populations that are differentiated genetically and behaviorally. We analyzed songs, spermatophores, and the immune function in male individuals from eight populations spanning a range of song types. As predicted, we only found trade-offs in those populations that expended more energy on song and were less flexible in their ability to adjust that expenditure. Ultimately, energy constraints and resulting trade-offs may limit the evolution of song exaggeration in E. diurnus populations broadcasting long calls comprised of multiple 'syllables'.
Data from: Energy exchanges at contact events guide sensorimotor integration across intermodal delays
The brain must consider the arm's inertia to predict the arm's movements elicited by commands impressed upon the muscles. Here, we present evidence suggesting that the integration of sensory information leading to the representation of the arm's inertia does not take place continuously in time but only at discrete transient events, in which kinetic energy is exchanged between the arm and the environment. We used a visuomotor delay to induce cross-modal variations in state feedback and uncovered that the difference between visual and proprioceptive velocity estimations at isolated collision events was compensated by a change in the representation of arm inertia. The compensation maintained an invariant estimate across modalities of the expected energy exchange with the environment. This invariance captures different types of dysmetria observed across individuals following prolonged exposure to a fixed intermodal temporal perturbation and provides a new interpretation for cerebellar ataxia.
Data from: Mesoscale activity facilitates energy gain in a top predator
How animal movement decisions interact with the distribution of resources to shape individual performance is a key question in ecology. However, links between spatial and behavioural ecology and fitness consequences are poorly understood because the outcomes of individual resource selection decisions, such as energy intake, are rarely measured. In the open ocean, mesoscale features (~10-100 km) such as fronts and eddies can aggregate prey and thereby drive the distribution of foraging vertebrates through bottom-up biophysical coupling. These productive features are known to attract predators, yet their role in facilitating energy transfer to top predators is opaque. We investigated the use of mesoscale features by migrating northern elephant seals and quantified the corresponding energetic gains from the seals' foraging patterns at a daily resolution. Migrating elephant seals modified their diving behaviour and selected for mesoscale features when foraging. Daily energy gain increased significantly with increasing mesoscale activity, indicating that the physical environment can influence predator fitness at fine temporal scales. Results show that areas of high mesoscale activity not only attract top predators as foraging hotspots, but also lead to increased energy transfer across trophic levels. Our study provides evidence that the physical environment is an important factor in controlling energy flow to top predators by setting the stage for variation in resource availability. Such understanding is critical for assessing how changes in the environment and resource distribution will affect individual fitness and food web dynamics.
Data from: Quantification of correlational selection on thermal physiology, thermoregulatory behavior and energy metabolism in lizards
Phenotypic selection is widely accepted as the primary cause of adaptive evolution in natural populations, but selection on complex functional properties linking physiology, behavior, and morphology has been rarely quantified. In ectotherms, correlational selection on thermal physiology, thermoregulatory behavior, and energy metabolism is of special interest because of their potential coadaptation. We quantified phenotypic selection on thermal sensitivity of locomotor performance (sprint speed), thermal preferences, and resting metabolic rate in captive populations of an ectothermic vertebrate, the common lizard, Zootoca vivipara. No correlational selection between thermal sensitivity of performance, thermoregulatory behavior, and energy metabolism was found. A combination of high body mass and resting metabolic rate was positively correlated with survival and negatively correlated with fecundity. Thus, different mechanisms underlie selection on metabolism in lizards with small body mass than in lizards with high body mass. In addition, lizards that selected the near average preferred body temperature grew faster that their congeners. This is one of the few studies that quantifies significant correlational selection on a proxy of energy expenditure and stabilizing selection on thermoregulatory behavior.
Data from: Energy and the scaling of animal space use
Daily animal movements are usually limited to a discrete home range area that scales allometrically with body size, suggesting that home-range size is shaped by metabolic rates and energy availability across species. However, there is little understanding of the relative importance of the various mechanisms proposed to influence home-range scaling (e.g., differences in realm productivity, thermoregulation, locomotion strategy, dimensionality, trophic guild, and prey size) and whether these extend beyond the commonly studied birds and mammals. We derive new home-range scaling relationships for fishes and reptiles and use a model-selection approach to evaluate the generality of home-range scaling mechanisms across 569 vertebrate species. We find no evidence that home-range allometry varies consistently between aquatic and terrestrial realms or thermoregulation strategies, but we find that locomotion strategy, foraging dimension, trophic guild, and prey size together explain 80% of the variation in home-range size across vertebrates when controlling for phylogeny and tracking method. Within carnivores, smaller relative prey size among gape-limited fishes contributes to shallower scaling relative to other predators. Our study reveals how simple morphological traits and prey-handling ability can profoundly influence individual space use, which underpins broader-scale patterns in the spatial ecology of vertebrates.
Data from: Geographic variation of body size in new world anurans: energy and water in a balance
The validity of Bergmann's rule, perhaps the best known ecogeographical rule, has been questioned for ectothermic species. Here, we explore the interspecific version of the rule documenting body size gradients for anurans across the whole New World and evaluating which environmental variables best explain the observed patterns. We assembled a dataset of body sizes for 2761 anuran species of the Western Hemisphere and conducted assemblage-based and cross-species analyses that consider the spatial and phylogenetic structure in the data. In accordance with heat and water-related explanations for body size clines, we found a consistent association of median body size and potential evapotranspiration across the New World. A relevant role of water availability also emerges, suggesting the joint importance of body size for thermoregulation and hydroregulation in anurans. Anurans do not follow a simple Bergmannian pattern of increasing size towards high latitudes. Consistent with previous regional findings, our Hemisphere-wide analyses detect that the geographic variation in anuran body sizes is highly dependent on a trade-off between heat and water balance. The observed size-climate relationships possibly emerge from the interplay between thermoregulatory abilities and the benefits inherent to reduced surface-to-volume ratios in larger species, which decrease the rates of evaporative water loss and favour heat retention. Our results also show how temperature becomes important for species that are directly in contact with the substrate and water, like burrowing and terrestrial anurans, while arboreal species exhibit a body size cline linked with potential evapotranspiration.
Data from: A bridge between oceans: Overland migration of marine birds in a wind energy corridor
Located at the shortest overland route between the Gulf of Mexico and the Pacific Ocean, Mexico's Tehuantepec Isthmus is a globally important migratory corridor for many terrestrial bird species. The Pacific coast of the Isthmus also contains a significant wetland complex that supports large multi-species aggregations of non-breeding waterbirds during the boreal winter. In recent years, extensive wind energy development has occurred in the plains bordering these wetlands, directly along the migratory flyway. Using recent studies of movement patterns of three marine-associated bird species—reddish egrets (Egretta rufescens), brown pelicans (Pelecanus occidentalis), and red knots (Calidris canutus)—from the northern Gulf of Mexico, we assess the use of the isthmus as a migratory corridor. Our data provide evidence that marine birds from the Gulf region regularly overwinter along the Pacific coast of Mexico and use the isthmus as a migratory corridor, creating the potential for interaction with terrestrial wind farms during non-breeding. This study is the first to describe migration by marine-associated bird species between the Gulf of Mexico and Pacific coast. These data contribute new information toward ongoing efforts to understand the complex migration patterns of mobile marine species, with the goal of informing integrated conservation efforts for species whose year-round habitat needs cross ecoregional and geopolitical boundaries.
Data from: The effect of meal frequency in a reduced-energy regimen on the gastrointestinal and appetite hormones in patients with type 2 diabetes: a randomised crossover study
Background: Appetite and gastrointestinal hormones (GIHs) participate in energy homeostasis, feeding behavior and regulation of body weight. We demonstrated previously the superior effect of a hypocaloric diet regimen with lower meal frequency (B2) on body weight, hepatic fat content, insulin sensitivity and feelings of hunger compared to the same diet divided into six smaller meals a day (A6).Studies with isoenergetic diet regimens indicate that lower meal frequency should also have an effect on fasting and postprandial responses of GIHs.The aim of this secondary analysis was to explore the effect of two hypocaloric diet regimens on fasting levels of appetite and GIHs and on their postprandial responses after a standard meal. It was hypothesized that lower meal frequency in a reduced-energy regimen leading to greater body weight reduction and reduced hunger would be associated with decreased plasma concentrations of GIHs: gastric inhibitory peptide (GIP), glucagon-like peptide-1(GLP-1), peptide YY(PYY), pancreatic polypeptide (PP) and leptin and increased plasma concentration of ghrelin. The postprandial response of satiety hormones (GLP-1, PYY and PP) and postprandial suppression of ghrelin will be improved. Methods: In a randomized crossover study, 54 patients suffering from type 2 diabetes (T2D) underwent both regimens.The concentrations of GLP-1, GIP, PP, PYY, amylin, leptin and ghrelin were determined using multiplex immunoanalyses. Results: Fasting leptin and GIP decreased in response to both regimens with no difference between the treatments (p=0.37 and p=0.83, respectively). Fasting ghrelin decreased in A6 and increased in B2 (with difference between regimens p=0.023). Fasting PP increased in B2with no significant difference between regimens (p=0.17). Neither GLP-1 nor PYY did change in either regimen. The decrease in body weight correlated negatively with changes in fasting ghrelin (r=-0.4, p<0.043) and the postprandial reduction of ghrelin correlated positively with its fasting level (r=0.9, p<0.001). The postprandial responses of GIHs and appetite hormones were similar after both diet regimens. Conclusions: Both hypocaloric diet regimens reduced fasting leptin and GIP and postprandial response of GIP comparably. The postprandial responses of GIHs and appetite hormones were similar after both diet regimens. Eating only breakfast and lunch increased fasting plasma ghrelin more than the same caloric restriction split into six meals. The changes in fasting ghrelin correlated negatively with the decrease in body weight. These results suggest that for type 2 diabetic patients on a hypocaloric diet, eating larger breakfast and lunch may be more efficient than six smaller meals during the day.
Data from: Energy expenditure of adult green turtles (Chelonia mydas) at their foraging grounds and during simulated oceanic migration
Measuring the energy requirements of animals under natural conditions and determining how acquired energy is allocated to specific activities is a central theme in ecophysiology. Turtle reproductive output is fundamentally linked with their energy balance so a detailed understanding of marine turtle energy requirements during the different phases of their life cycle at sea is essential for their conservation. We used the non-invasive accelerometry technique to investigate the activity patterns and energy expenditure (EE) of adult green turtles (Chelonia mydas) foraging year-round at a seagrass meadow in Mayotte (n = 13) and during simulated oceanic migration (displacement from the nesting beach) off Mohéli (n = 1), in the south-western Indian Ocean. At the foraging site, turtles divided their days between foraging benthically on the shallow seagrass meadow during daylight hours and resting at greater depth on the inner side of the reef slope at night. Estimated oxygen consumption rates (sinline image) and daily energy expenditures (DEE) at the foraging site were low (sinline image during the day was 1·6 and 1·9 times the respective resting rate at night during the austral summer and winter, respectively), which is consistent with the requirement to build up substantial energy reserves at the foraging site, to sustain the energy-demanding breeding migration and reproduction. Dive duration (but not dive depth) at the foraging site shifted significantly with season (dive duration increased with declining water temperatures, Tw), while overall activity levels remained unchanged. In parallel with a significant seasonal decline in Tw (from 28·9 ± 0·1 °C to 25·3 ± 0·4 °C), there was a moderate (˜19%) but significant decline in DEE of turtles during the austral winter (901 ± 111 kJ day−1), when compared with the austral summer (1117 ± 66 kJ day−1). By contrast, the turtle moved continuously during simulated oceanic migration, conducting short/shallow dives in the day, which (predominately at night) were interspersed with longer and deeper 'pelagic' dives. Estimated oxygen consumption rates during a simulated migration (1·25 ± 0·16 mL O2 min−1 kg−0·83) were found to be significantly increased over the foraging condition, equal to ˜3 times the resting rate at night (0·42 ± 0·02 mL O2 min−1 kg−0·83), and daily energy expenditure amounted to 2327 ± 292 kJ day−1, underlining the tremendous energetic effort associated with breeding migration. Our study indicates that the accelerometry technique provides a new and promising opportunity to study marine turtle energy relations in great detail and under natural conditions.
Data from: Do the high energy lifestyles of shorebirds result in high maximal metabolic rates? - Basal and maximal metabolic rates in least and pectoral sandpipers during migration
Shorebirds have high resting and field metabolic rates relative to many other bird groups, and this is posited to be related to their high-energy lifestyle. Maximum metabolic outputs for cold or exercise are also often high for bird groups with energetically demanding lifestyles. Moreover, shorebirds demonstrate flexible basal and maximal metabolic rates, which vary with changing energy demands throughout the annual cycle. Consequently, shorebirds might be expected to have high maximum metabolic rates, especially during migration periods. We captured least (Calidris minutilla) and pectoral (C. melanotos) sandpipers during spring and fall migration in southeastern South Dakota and measured maximal exercise metabolic rate (MMR; least sandpipers only), summit metabolic rate (Msum, maximal cold-induced metabolic rate) and basal metabolic rate (BMR, minimum maintenance metabolic rate) with open-circuit respirometry. BMR for both least and pectoral sandpipers exceeded allometric predictions by 3-14%, similar to other shorebirds, but Msum and MMR for both species were either similar to or lower than allometric predictions, suggesting that the elevated BMR in shorebirds does not extend to maximal metabolic capacities. Old World shorebirds show the highest BMR during the annual cycle on the Arctic breeding grounds. Similarly, least sandpiper BMR during migration was lower than on the Arctic breeding grounds, but this was not the case for pectoral sandpipers, so our data only partially support the idea of similar seasonal patterns of BMR variation in New World and Old World shorebirds. We found no correlations of BMR with either Msum or MMR for either raw or mass-independent data, suggesting that basal and maximum aerobic metabolic rates are modulated independently in these species.
Data from: State-dependent behavior alters endocrine-energy relationship: implications for conservation and management
Glucocorticoids (GC) and triiodothyronine (T3) are two endocrine markers commonly used to quantify resource limitation, yet the relationships between these markers and the energetic state of animals has been studied primarily in small-bodied species in captivity. Free-ranging animals, however, adjust energy intake in accordance with their energy reserves, a behavior known as state-dependent foraging. Further, links between life-history strategies and metabolic allometries cause energy intake and energy reserves to be more strongly coupled in small animals relative to large animals. Because GC and T3 may reflect energy intake or energy reserves, state-dependent foraging and body size may cause endocrine-energy relationships to vary among taxa and environments. To extend the utility of endocrine markers to large-bodied, free-ranging animals, we evaluated how state-dependent foraging, energy reserves, and energy intake influenced fecal GC and fecal T3 concentrations in free-ranging moose (Alces alces). Compared with individuals possessing abundant energy reserves, individuals with few energy reserves had higher energy intake and high fecal T3 concentrations, thereby supporting state-dependent foraging. Although fecal GC did not vary strongly with energy reserves, individuals with higher fecal GC tended to have fewer energy reserves and substantially greater energy intake than those with low fecal GC. Consequently, individuals with greater energy intake had both high fecal T3 and high fecal GC concentrations, a pattern inconsistent with previous documentation from captive animal studies. We posit that a positive relationship between GC and T3 may be expected in animals exhibiting state-dependent foraging if GC is associated with increased foraging and energy intake. Thus, we recommend that additional investigations of GC- and T3-energy relationships be conducted in free-ranging animals across a diversity of body size and life-history strategies before these endocrine markers are applied broadly to wildlife conservation and management.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.