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4,144 results for “ITS barcode”
FIGURE 9 in New Thai giant pill-millipede species, with new genetic barcoding data (Diplopoda Sphaerotheriida, Zephroniidae)
FIGURE 9. Zephronia chrysomallos Bhansali & Wesener sp. nov., holotype ♂ (ZFMK MYR8826), scanning electron micrographs. A. Gnathochilarium, ventral view. B. Right mandible, mesal view. Abbreviations: C = condyles; Cp = cental pad; eT = external tooth; Ip = inner palpi; iT = internal combined tooth; LL = lamellae linguales; Mn = mentum; pL = pectinate lamellae; St = stipites.
FIGURE 13 in New Thai giant pill-millipede species, with new genetic barcoding data (Diplopoda Sphaerotheriida, Zephroniidae)
FIGURE 13. Zephronia erawani Bhansali & Wesener sp. nov., holotype ♂ (ZMUC K56-9), drawings, A. Left leg 9, posterior view B. Second left coxa with gonopore, posterior view. C. Right anterior telopod, anterior view. D. Right anterior telopod, lateral view. E. Right anterior telopod, posterior view. Abbreviations: as = apical spine; cl = claw; Cx = coxa; Fe = femur; Go = gonopore; Po = postfemur; Pre = prefemur; Sp-p = second podomere process; St = stigmatic plate; Syn = syncoxite; Ta = tarsus; Ti = tibia; vs = ventral spines. Scale bars = 1 mm.
FIGURE 10 in New Thai giant pill-millipede species, with new genetic barcoding data (Diplopoda Sphaerotheriida, Zephroniidae)
FIGURE 10. Zephronia chrysomallos Bhansali & Wesener sp. nov., holotype ♂ (ZFMK MYR8826), drawings, A. First left coxa with stigmatic plate, posterior view. B. Left leg 9, posterior view. C. Second left coxa with gonopore, posterior view. D. Right anterior telopod, lateral view. E. Right anterior telopod, posterior view. F. Right anterior telopod, anterior view. Abbreviations: as = apical spine; cl = claw; Cx = coxa; Fe = femur; Go = gonopore; Po = postfemur; Pre = prefemur; Sp-p = second podomere process; St = stigmatic plate; Syn = syncoxite; Ta = tarsus; Ti = tibia; vs = ventral spines. Scale bars = 1 mm.
FIGURE 79 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURE 79. Bayesian inference (BI) trees based on the cytochrome c oxidase I (COI) nucleotide sequence data of the genus Diamesa Meigen and outgroup Pseudokiefferiella parva (Edwards) Bayesian posterior probabilities (higher than 0.7) are given above tree nodes. Specimens obtained in this study are in bold.
FIGURES 68–74 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 68–74. Type localities of Diamesa dragani sp. nov. (68), D. kownackii sp. nov. (69–70), D. maisaraensis sp. nov. (71), D. marinskiyi sp. nov. (72), D. steinboecki Goetghebuer (73) and D. sakartvella Kownacki et Kownacka (74). 68, unnamed stream of Bolshoi On River basin, alt. 2063 m a. sea l., Sayan Mountains (photo by S.V. Dragan); 69, unnamed stream of Somnitelnaya River basin, Wrangel Island (photo by E.A. Makarchenko); 70, Somnitelnaya River, upper stream, alt. 205–210 m a. sea l., Wrangel Island (photo by O.A. Khruleva); 71, Maisara River near Maisara Pass, alt. 4168 m a. sea l., Pamir Mountains (photo by D.M. Palatov); 72, Zienzan River, Tien Shan Mountains, alt. 1923 m a. sea l., Xinjiang Uygur Autonomous Region, China (photo by D.M. Palatov); 73, Balm stream, Massif of Aiguilles–Rouges, French Alps (photo by Pierre Clévenot); 74, Skazdon River near the Tsey (Tseyskoe gorge), alt. 1943 m a. sea l., North Caucasus (photo by D.M. Palatov).
FIGURES 37–44 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 37–44. Males of Diamesa zagrosica sp. nov. (37, 41), D. sakartvella Kownacki et Kownacka (38, 42) and D. moubayedi sp. nov. (39–40, 43–44). 37, head; 38, 41, hypopygium in dorsal view; 40, hypopygium in dorsal view without tergite IX; 42, wing; 43, tergite IX; 44, anal point in lateral view.
FIGURES 45–57 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 45–57. Some details of male's hypopygium of Diamesa sakartvella Kownacki et Kownacka (45, 50–51, 57), D. moubayedi sp. nov. (46–47, 52, 55), D. zagrosica sp. nov. (48–49, 53–54, 56). 45–49, gonostylus; 46, apex of gonostylus; 50–54, transverse sternapodeme; 55–57, superior volsellae.
FIGURES 58–67 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 58–67. Diamesa praecipua Saether et Willassen, male. 58, total view; 59, antenna; 60, head; 61, wing; 62, thorax; 63, hypopygium in dorsal view; 64, apex of gonostylus; 65, transverse sternapodeme; 66, aedeagal lobe; 67, gonostylus.
FIGURES 30–36 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 30–36. Wings of Diamesa dragani sp. nov. (30), D. kownackii sp. nov. (31), D. maisaraensis sp. nov. (32), D. marinskiyi sp. nov. (33) and D. steinboecki Goetghebuer from Swiss Alps (34), French Alps (35) and Pamir Mountains (36).
FIGURES 22–25 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 22–25. Diamesa marinskiyi sp. nov., male. 22, head; 23, tergite IX; 24, gonocoxite and gonostylus; 25, transverse sternapodeme, phallapodeme and aedeagal lobe.
FIGURES 15–21 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 15–21. Diamesa maisaraensis sp. nov., males. 15, head; 16, part of thorax in lateral view; 17, gonocoxite and gonostylus; 18, tergite IX; 19–20, anal point in lateral view; 21, phallapodeme and aedeagal lobe. AAII—anterior anepisternum II, Pa—prealars.
FIGURES 26–29 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 26–29. Males of Diamesa steinboecki Goetghebuer from Pamir Mountains (26), Swiss Alps (27–28) and French Alps (29). 26, gonocoxite and gonostylus; 27, 29, hypopygium in dorsal view; 28, transverse sternapodeme, phallapodeme and aedeagal lobe. Designations are the same as in Figures 1–8.
FIGURES 9–14 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 9–14. Diamesa kownackii sp. nov., male. 9, head; 10, tergite IX; 11–12, transverse sternapodeme, phallapodeme and aedeagal lobe; 13, gonocoxite and gonostylus; 14, anal point in lateral view.
Figure 1 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 1. Phylogenetic tree based on the 18S rRNA gene, ITS1-5.8S-ITS2 region and 28S rRNA gene, showing relationships among ciliates isolated from the digestive tract of panesthiine cockroaches. All tree-building methods resulted in very similar topologies. The single exception is the Anteclevelandella constricta cluster, where the IQTree topology differs from that of both Bayesian trees (shown in the box). Bootstrap values for the maximum likelihood conducted in IQTrees and posterior probabilities for Bayesian inferences conducted in MrBayes and Phycas are listed at corresponding nodes of the best scoring IQTree. Specimen codes and further details are listed in Table 1. The scale bar denotes two substitutions per one hundred nucleotide positions.
Figure 4 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 4. Consensus secondary structure of the ITS2 molecule of 54 members of the order Clevelandellida isolated from the digestive tract of cockroaches. Note that the central loop radiates four highly conserved helices. The structure logo of helices is shown on the right side. The height of a base is proportional to its frequency in the multiple sequence alignment.
Figure 3 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 3. MDS diagrams (A, C, E) and TCS networks (B, D, F) based on 18S rRNA gene (A, B), ITS1-5.8S-ITS2 region (C, D) and 28S rRNA gene (E, F) sequences of the family Clevelandellidae. The MDS diagrams show the distribution of specimens in the genotype space. Species belonging to the same genus form a cluster distinctly isolated from other such clusters. The TCS networks reflect the most parsimonious relationships among species given the individual markers. Numbers along edges indicate mutational steps between adjacent nodes. Species belonging to the same genus are marked by the same colour code.
Figure 7 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 7. Putative secondary structure models of the highly divergent helix c3-1 in the D2 domain of the 28S rRNA molecule of 17 species of the order Clevelandellida isolated from the digestive tract of cockroaches. Arrowheads denote the molecular diagnostic characters.
Figure 2. Coalescent species trees with 13 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 2. Coalescent species trees with 13 (A) and 14 (B) assumed species based on 18S rRNA gene, ITS1-5.8S-ITS2 region and 28S rRNA gene sequences. Posterior probabilities of clades are provided along internal branches and posterior probabilities for the presence of individual species are provided behind the terminal branches. Scale bars denote the fraction of substitutions per site.
Figure 9 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 9. MDS diagram (A) and TCS network (B) based on concatenated 18S rRNA gene, ITS1-5.8S-ITS2 region and 28S rRNA gene sequences of the family Clevelandellidae. The MDS diagram shows the distribution of specimens in the genotype space. Species belonging to the same genus form a cluster distinctly isolated from other such clusters. The TCS network reflects the most parsimonious relationships among species given the concatenated dataset. Numbers along edges indicate mutational steps between adjacent nodes. Species belonging to the same genus are marked by the same colour code.
Figure 6 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 6. Putative secondary structure models of helices 39‒44 in the V7 region of the 18S rRNA molecule of four Nyctotherus species isolated from the digestive tract of cockroaches. Arrowheads denote the molecular diagnostic characters. CBC, compensatory base change; hemi-CBC, hemi-compensatory base change.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.