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3,878 results for “Molecular Data”
Data for "Investigating molecular transport in the human brain from MRI with physics-informed neural networks"
<p>Data analyzed in Zapf <em>et al.</em> <a href="https://www.nature.com/articles/s41598-022-19157-w">Investigating molecular transport in the human brain from MRI with physics-informed neural networks</a> (Scientific Reports 2022).</p> <p>The data consists of CSF tracer concentrations in the brain subregions analyzed in the article. The data was pre-processed as described in S1.1 in the supplementarty materials. </p> <p>In Python, load the data as numpy arrays using the nibabel package as</p> <pre><code>import nibabel data = nibabel.load("068/concentrations/24h.mgz").get_fdata() domain_mask = nibabel.load("068/masks/roi.mgz").get_fdata().astype(bool)<br>And view slices of the data as:</code></pre> <div> <div><span>plt</span><span>.</span><span>figure</span><span>()</span></div> <div><span>plt</span><span>.</span><span>imshow</span><span>(</span><span>np</span><span>.take(</span><span>data</span><span>, </span><span>150</span><span>, </span><span>0</span><span>), </span><span>vmax</span><span>=</span><span>0.1</span><span>)</span></div> <div><span>plt</span><span>.</span><span>figure</span><span>()</span></div> <div><span>plt</span><span>.</span><span>imshow</span><span>(</span><span>np</span><span>.take(</span><span>data</span><span>, </span><span>100</span><span>, </span><span>1</span><span>), </span><span>vmax</span><span>=</span><span>0.1</span><span>)</span></div> <div><span>plt</span><span>.</span><span>figure</span><span>()</span></div> <div><span>plt</span><span>.</span><span>imshow</span><span>(</span><span>np</span><span>.take(</span><span>data</span><span>, </span><span>100</span><span>, </span><span>2</span><span>), </span><span>vmax</span><span>=</span><span>0.1</span><span>)</span></div> <div><span>plt</span><span>.</span><span>show</span><span>()</span></div> </div> <pre> </pre>
Raw Data for the Manuscript Titled "Can Current Molecular Docking Methods Accurately Predict RNA Inhibitors?"
<p>This is the additional data for the manuscript titled "Can Current Molecular Docking Methods Accurately Predict RNA Inhibitors?". These files include <strong>(a) </strong>The docked scores for scoring potential analysis, <strong>(b)</strong> The docked scores for ranking potential analysis, <strong>(c)</strong> The top five docked poses from each docking method (AutoDock Vina, HADDOCK, HDOCK and RLDOCK) and <strong>(d) </strong>The Molecular Dynamics (MD) simulation parameter and topology files used for pose refinment.</p>
Scripts and data from the study 'Characterisation of magnetic atomic and molecular beamlines for the extraction of empirical scattering-matrices' (PCCP manuscript number CP-ART-04-2024-001785)
<p>This repository contains the data used for the article "Characterisation of magnetic atomic and molecular beamlines for the extraction of empirical scattering-matrices" and includes the code for generating the figures in the publication.</p>
Supporting data for "Collisional alignment and molecular rotation control the chemi-ionization of individual conformers of hydroquinone with metastable neon"
Open the record for dataset details and reuse information.
FIGURE 5. A, B in Establishment of three new species of Rhabdoblatta Kirby, 1903 (Blattodea, Blaberidae, Epilamprinae) from China on the basis of molecular and morphological data
FIGURE 5. A, B Habitat of Rhabdoblatta maculosa Guo et Che, sp. n. from Longtang Villa, Guangdong Prov. C Male R. maculosa sp. n. from Longtang Villa, Guangdong Prov. D Female R. maculosa sp. n. from Longtang Villa, Guangdong Prov. All photos were taken by Ke-Liang Wu.
FIGURE 2 in Establishment of three new species of Rhabdoblatta Kirby, 1903 (Blattodea, Blaberidae, Epilamprinae) from China on the basis of molecular and morphological data
FIGURE 2. Rhabdoblatta maculosa Guo et Che, sp. n. A, B, E–N male; C, D female; A holotype, dorsal view; B holotype, ventral view; C paratype, dorsal view; D paratype, ventral view; E, F pronotum, dorsal view; G front femur, ventral view; H hind tarsi, ventral view; I tegmen; J wings; K supraanal plate, ventral view; L right phallomere, dorsal view; M median phallomere (sclerite L2D), dorsal view; N left phallomere (sclerite L3), dorsal view; O subgenital plate, dorsal view. Scale bars: 1.0 cm (A–D, I, J); 2.0 mm (E, F, H); 1.0 mm (G, K–O).
FIGURE 1 in Establishment of three new species of Rhabdoblatta Kirby, 1903 (Blattodea, Blaberidae, Epilamprinae) from China on the basis of molecular and morphological data
FIGURE 1. Maximum likelihood (ML) tree derived from COI sequences based on the K2P model. Branch labels are provided as bootstrap support values. Colored bars indicate different species delimitation by different methods A morphology (peach) B ABGD results (purple).
FIGURE 4 in Establishment of three new species of Rhabdoblatta Kirby, 1903 (Blattodea, Blaberidae, Epilamprinae) from China on the basis of molecular and morphological data
FIGURE 4. Rhabdoblatta cavicola Guo et Che, sp. n. A, B, E–N male; C, D female; A holotype, dorsal view; B holotype, ventral view; C paratype, dorsal view; D paratype, ventral view; E pronotum, dorsal view; F front femur, ventral view; G hind tarsi, ventral view; H tegmen; I wings; J supraanal plate, ventral view; K right phallomere, dorsal view; L median phallomere (sclerite L2D), dorsal view; M left phallomere (sclerite L3), dorsal view; N subgenital plate, dorsal view. Scale bars: 1.0 cm (A–D, H, I); 2.0 mm (E, G); 1.0 mm (F, J–N).
FIGURE 3 in Establishment of three new species of Rhabdoblatta Kirby, 1903 (Blattodea, Blaberidae, Epilamprinae) from China on the basis of molecular and morphological data
FIGURE 3. Rhabdoblatta equalisinensis Guo et Che, sp. n. A, B male; A holotype, dorsal view; B holotype, ventral view; C pronotum, dorsal view; D front femur, ventral view; E hind tarsi, ventral view; F tegmen; G wings; H supraanal plate, ventral view; I right phallomere, dorsal view; J median phallomere (sclerite L2D), dorsal view; K left phallomere (sclerite L3), dorsal view; L subgenital plate, dorsal view. Scale bars: 1.0 cm (A, B, F, G); 2.0 mm (C, E); 1.0 mm (D, H–L).
FIGURE 6. A in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 6. A. Posterior end of male Trichuris minuta from Didelphis virginiana showing the cilindrical spicular sheath, lateral view. B. Esophagus-intestine junction, and vulva of female Trichuris sp. from Philander vossi, lateral view. C. SEM micrograph of female proboscis of Oligacanthorhynchus microcephalus, lateral view. Abbreviations: egg (e), hook (h), proboscis (p), spicule (s), trunk (t), vulva (v), spicule sheath (ss), distal cloacal tube (dct).
FIGURE 2 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 2. Mathevotaenia sp. from Didelphis virginiana. A. SEM micrograph of scolex in lateral view. B. Mature proglottid in dorsal view. Abbreviations: sucker (s), cirrus sac (cs), ovary (o), testis (t), vitelline gland (vg).
FIGURE 1 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 1. Brachylaima sp. and Platynosomum illiciens from Didelphis virginiana. A. Adult specimen of Brachylaima sp., ventral view. B. SEM micrograph of Brachylaima sp. anterior end, ventral view. C. Adult specimen of Platynosomum illiciens ventral view. Abbreviations: oral sucker (os), ventral sucker (vs), testis (t), vitellaria (v), ovary (o), genital pore (gp).
FIGURE 9 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 9. Maximum-likelihood (ML) phylogenetic tree of Trichostrongylidea inferred with 28S rRNA sequence data using the GTR + G model (ln likelihood -6392.437537). GenBank accession numbers precede species name, followed by host name. Bootstrap support values for ML are provided at the nodes. The new sequences of the present study are in bold.
FIGURE 4. A in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 4. A. Male caudal bursa of Viannaia arriguensis from Philander vossi, ventral view. B. Male caudal bursa of Viannaia sp. from Didelphis virginiana, ventral view. C. Cross section at midbody showing features of the synlophe of male Travassostrongylus sp. from Didelphis virginiana. D. Male caudal bursa of Travassostrongylus sp. from Didelphis virginiana, ventral view. E. Anterior end of female Strongyloides sp. from Philander vossi, ventral view. F. Female tail of Strongyloides sp. from Philander vossi showing the anus, lateral view. G. Vulva of Strongyloides sp. from Philander vossi, lateral view. Abbreviations: anus (a), egg (e), intestine (i), spicule (s), vulva (v), dorsal ray (dr), esophagus (es).
FIGURE 8 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 8. Maximum-likelihood (ML) phylogenetic tree of Anoplocephalidae inferred with 28S rRNA sequence data using the GTR + G model (ln likelihood -10764.655700). GenBank accession numbers precede species name, followed by host name. Bootstrap support values for ML are provided at the nodes. The new sequences of the present study are in bold.
FIGURE 7 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 7. Maximum-likelihood (ML) phylogenetic tree of Brachylaimidea inferred with 28S rRNA sequence data using the TVM + G (ln likelihood -4739.195144). GenBank accession numbers precede species name, followed by host name. Bootstrap support values for ML are provided at the nodes. The new sequences of the present study are in bold.
FIGURE 3 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 3. Males of Cruzia americana and Cruzia tentaculata from Didelphis virginiana. A. SEM micrograph of C. americana anterior end, apical view. B. SEM micrograph of internal structures of pharynx (columnar structures of cuticular lamellae) of C. americana, longitudinal section. C. SEM micrograph of C. americana posterior end, lateral view. D. Cruzia americana posterior end, ventral view. E. Gubernaculum of C. americana, ventral view. F. Internal structures of pharynx (columnar structures of cuticular lamellae) of C. tentaculata, longitudinal section. G. Gubernaculum of C. tentaculata, ventral view. Abbreviations: amphid (a), dorsal lip (dl), ventral lip (vl), papillae (p), pharyngeal lamellae (pl), paracloacal papillae (pac), precloacal papillae (pec), poscloacal papillae (poc), single precloacal papilla (spec), teeth (t).
FIGURE 5 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE 5. Turgida turgida from Didelphis virginiana. SEM micrograph of male cephalic region, apical view. B. SEM micrograph of male posterior end, ventral view. C. Uterus with nine uterine branches, ventral view. Abbreviations: amphid (a), external tooth (et), externolateral papillae (elp), precloacal papillae (pcp), postcloacal papillae (pop), phasmids (ph), spongelike area (sa), tripartite tooth (tt), uterine branch (ub).
FIGURE S2 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE S2. Maximum-likelihood (ML) phylogenetic tree of Physalopteridae inferred with 28S rRNA sequence data using the GTR + G model (ln likelihood -5866.434194). GenBank accession numbers precede species name, followed by host name. Bootstrap support values for ML are provided at the nodes. The new sequences of the present study are in bold.
FIGURE S1 in Morphological and molecular data on helminths of Didelphis virginiana and Philander vossi (Mammalia: Didelphidae) from the Yucatán Peninsula, southeast Mexico
FIGURE S1. Maximum-likelihood (ML) phylogenetic tree of Kathlaniidae inferred with 28S rRNA sequence data using the GTR + G model (ln likelihood -4273.141975). GenBank accession numbers precede species name, followed by host name. Bootstrap support values for ML are provided at the nodes. The new sequences of the present study are in bold.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.