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4,010 results for “STABILITY”
Data from: Use of elastic stability analysis to explain the stress-dependent nature of soil strength
The peak and critical state strengths of sands are linearly related to the stress level, just as the frictional resistance to sliding along an interface is related to the normal force. The analogy with frictional sliding has led to the use of a 'friction angle' to describe the relationship between strength and stress for soils. The term 'friction angle' implies that the underlying mechanism is frictional resistance at the particle contacts. However, experiments and discrete element simulations indicate that the material friction angle is not simply related to the friction angle at the particle contacts. Experiments and particle-scale simulations of model sands have also revealed the presence of strong force chains, aligned with the major principal stress. Buckling of these strong force chains has been proposed as an alternative to the frictional-sliding failure mechanism. Here, using an idealized abstraction of a strong force chain, the resistance is shown to be linearly proportional to the magnitude of the lateral forces supporting the force chain. Considering a triaxial stress state, and drawing an analogy between the lateral forces and the confining pressure in a triaxial test, a linear relationship between stress level and strength is seen to emerge from the failure-by-buckling hypothesis.
Data from: Temporal genetic stability and high effective population size despite fisheries-induced life-history trait evolution in the North Sea sole.
Heavy fishing and other anthropogenic influences can have profound impact on a species' resilience to harvesting. Besides the decrease of the census and effective population size, strong declines in mature adults and recruiting individuals may lead to almost irreversible genetic changes in life-history traits. Here, we investigated the evolution of genetic diversity and effective population size in the heavily exploited sole (Solea solea), through the analysis of historical DNA from a collection of 1379 sole (Solea solea) otoliths dating back from 1957. Despite documented shifts in life-history traits, neutral genetic diversity inferred from 11 microsatellite markers showed a remarkable stability over a period of 50 years of heavy fishing. Using simulations and corrections for fisheries induced demographic variation, both point and temporal estimates of effective population size (Ne) were always higher than 1000, suggesting that despite the severe census size decrease over a 50 year period of harvesting, genetic drift is probably not strong enough to significantly decrease the neutral diversity of this species in the North Sea. However the ratio of effective population size to the census size (Ne/Nc) was very small (10-5), suggesting that overall only few adults contribute to the next generation. The high Ne level together with the low Ne/Nc ratio is most likely caused by a combination of an equalized reproductive output of younger cohorts, a decrease in generation time and a large variance in reproductive success typical for marine species. Because strong evolutionary changes in age and size at first maturation have been observed for sole, changes in adaptive genetic variation should be further monitored to detect the evolutionary consequences of human-induced selection.
Data from: Clonal structure through space and time: high stability in the holothurian Stichopus chloronotus (Echinodermata)
Sea cucumbers are increasingly exploited for human consumption and for their curative properties, and many wild populations are now depleted or in danger of extinction. While aquaculture is seen as an alternative to fisheries and as a mean to restore wild populations, more knowledge is needed on their reproductive strategies to render this practice efficient, notably for fissiparous holothurians, which are some of the mobile animals able of asexual reproduction by transverse fission. Little information is available on their population genetic diversity and structure. Here, the clonal structure of populations of the fissiparous sea cucumber Stichopus chloronotus has been investigated using nine microsatellite loci and a random sampling, at different spatial (intra-reef and inter-reef) and temporal (inter-season and inter-year) scales. Our findings highlight the importance of asexual reproduction in maintaining these populations, and the prevalence of the "initial seedling recruitment" strategy (ISR), leading to a high stability of clonal composition over seasons and years. It also seemed that clonal propagation was limited to the reef scale (<10 km) while reefs were connected by sexual dispersal. This is the first time that clonal structure in sea cucumbers has been studied at such a fine scale, with a specific sampling strategy. It provides key findings on the genetic diversity and structure of fissiparous sea cucumbers, which will be useful for the management of wild populations and aquaculture.
Data from: Subordinate plants sustain the complexity and stability of soil micro-food webs in natural bamboo forest ecosystems
Subordinate plants have a significant impact on soil organisms in primary successional floodplains and grassland ecosystems, but their role in subtropical forest ecosystems remains unclear. An experiment was conducted in a subtropical forest to test the hypothesis that removal of shrubs or subordinate arbour tree species would reduce the complexity and stability of the soil micro-food web. Principal response curves (PRCs) were performed to assess the responses of soil microbial and nematode communities to plant removal compared with a control through time. The effect of plant removal on complexity and stability in the soil micro-food web was assessed using a suite of indices including ratio of omnivorous-predatory to herbivorous nematode abundance (OP : H ratio), nematode diversity, resistance and resilience. Furthermore, increments of bamboo productivity among treatments were estimated. Soil microbial community structure changed in response to plant removal in 2009, but recovered in 2010, and the only change observed was increased soil fungal biomass. In contrast, plant removal had greater impact on soil nematode community composition in 2010 than 2009. Subordinate arbour tree species removal (with or without shrubs) decreased the values of nematode richness, evenness, diversity, ratio of microbial-feeding to herbivorous nematode abundance (M : H ratios), OP : H ratios and resistance indices in 2010, but only decreased OP : H ratios in 2009 and increased the values of nematode dominance in 2010. Although increments in bamboo productivity were statistically similar among treatments, there was a trend decreasing progressively from control to shrub removal + selective-cutting of subordinate arbour tree species, shrub removal, and selective-cutting of subordinate arbour tree species treatments. Synthesis and applications. Subordinate plants help sustain the complexity and stability of soil micro-food webs in subtropical bamboo forest ecosystems. Therefore, protection of subordinate plants and maintaining high plant diversity are important parts of a responsible management strategy in subtropical bamboo forests.
Data from: Evolutionary stability of jointly evolving traits in subdivided populations
The evolutionary stability of quantitative traits depends on whether a population can resist invasion by any mutant. While uninvadability is well understood in well-mixed populations, it is much less so in subdivided populations when multiple traits evolve jointly. Here, we investigate whether a spatially subdivided population at a monomorphic equilibrium for multiple traits can withstand invasion by any mutant or is subject to diversifying selection. Our model also explores the correlations among traits arising from diversifying selection and how they depend on relatedness due to limited dispersal. We find that selection tends to favor a positive (negative) correlation between two traits when the selective effects of one trait on relatedness is positively (negatively) correlated to the indirect fitness effects of the other trait. We study the evolution of traits for which this matters: dispersal that decreases relatedness and helping that has positive indirect fitness effects. We find that when dispersal cost is low and the benefits of helping accelerate faster than its costs, selection leads to the coexistence of mobile defectors and sessile helpers. Otherwise, the population evolves to a monomorphic state with intermediate helping and dispersal. Overall, our results highlight the effects of population subdivision for evolutionary stability and correlations among traits.
Data from: Dispersing hydrophobic natural colorant β-carotene in shellac particles for enhanced stability and tunable color
Color is one of the most important visual attributes of food and is directly related to the perception of food quality. The interest in natural colorants, especially β-carotene that not only imparts color but also has well-documented health benefits, has triggered the research and development of different protocols designed to entrap these hydrophobic natural molecules to improve their stability against oxidation. Here, we report a versatile microfluidic approach that utilizes single emulsion droplets as templates to prepare microparticles loaded with natual colorants. The solution of β-carotene and shellac in the solvent is emulsified by microfluidics into droplets. Upon solvent diffusion, β-carotene and shellac co-precipitates, forming solid microparticles of β-carotene dispersed in the shellac polymer matrix. We substantially improve the stability of β-carotene that is protected from oxidation by the polymer matrix and achieve different color appearances by loading particles with different β-carotene concentrations. These particles demonstrate great promise for practical use in natural food coloring.
Data from: Coevolution of competing Callosobruchus species does not stabilize coexistence
Interspecific resource competition is expected to select for divergence in resource use, weakening interspecific relative to intraspecific competition, thus promoting stable coexistence. More broadly, because interspecific competition reduces fitness, any mechanism of interspecific competition should generate selection favoring traits that weaken interspecific competition. However, species also can adapt to competition by increasing their competitive ability, potentially destabilizing coexistence. We reared two species of bean beetles, the specialist Callosobruchus maculatus and the generalist C. chinensis, in allopatry and sympatry on a mixture of adzuki beans and lentils, and assayed mutual invasibility after four, eight, and twelve generations of evolution. Contrary to the expectation that coevolution of competitors will weaken interspecific competition, the rate of mutual invasibility did not differ between sympatry and allopatry. Rather, the invasion rate of C. chinensis, but not C. maculatus, increased with duration of evolution, as C. chinensis adapted to lentils without experiencing reduced adaptation to adzuki beans, and regardless of the presence or absence of C. maculatus. Our results highlight that evolutionary responses to interspecific competition promote stable coexistence only under specific conditions that can be difficult to produce in practice.
Data from: Hummingbirds control hovering flight by stabilizing visual motion
Relatively little is known about how sensory information is used for controlling flight in birds. A powerful method is to immerse an animal in a dynamic virtual reality environment to examine behavioral responses. Here, we investigated the role of vision during free-flight hovering in hummingbirds to determine how optic flow—image movement across the retina—is used to control body position. We filmed hummingbirds hovering in front of a projection screen with the prediction that projecting moving patterns would disrupt hovering stability but stationary patterns would allow the hummingbird to stabilize position. When hovering in the presence of moving gratings and spirals, hummingbirds lost positional stability and responded to the specific orientation of the moving visual stimulus. There was no loss of stability with stationary versions of the same stimulus patterns. When exposed to a single stimulus many times or to a weakened stimulus that combined a moving spiral with a stationary checkerboard, the response to looming motion declined. However, even minimal visual motion was sufficient to cause a loss of positional stability despite prominent stationary features. Collectively, these experiments demonstrate that hummingbirds control hovering position by stabilizing motions in their visual field. The high sensitivity and persistence of this disruptive response is surprising, given that the hummingbird brain is highly specialized for sensory processing and spatial mapping, providing other potential mechanisms for controlling position.
Data from: Structural modification of isomorphous SO42−-doped K2FeO4 for remediating the stability and enhancing the discharge of super-iron battery
In the paper, the isomorphous SO42- doped K2FeO4, aimed at the remediation of the discharge and stability of the super-iron battery, was first synthesized for doping and reforming the K2FeO4 crystalline structure via a facile coprecipitation and mechanochemistry. Afterward, the compared cathodes were assembled by the undoped and doped K2FeO4 for an evaluation of the discharge and stability in the AAA super-iron battery system. The results show that the small amounts of K2SO4 were doped into the K2FeO4 in the calculated form of K2Fe1-xSxO4 by the isomorphous substitution. The doped K2FeO4 cathodes/batteries exhibited an excellent discharge with a normal discharge profile. The cathodes doped by two techniques had significantly enhanced the discharge capacity of the super-iron battery with an increase of 10-30% compared to the undoped K2FeO4. Moreover, the stability of the K2FeO4 cathodes was obviously remediated by the isomorphous SO42- doping. The shelf time of the doped K2FeO4 cathodes was prolonged by an increase of about 10% in comparison of the undoped K2FeO4 cathode. The desirable enhancements could be attributed to doping and reforming the similar building block and isomorphous SO42- into the FeO42- tetrahedral and crystalline in the form of the isomorphous substitution and filling vacancies.
Data from: Nested species interactions promote feasibility over stability during the assembly of a pollinator community
The foundational concepts behind the persistence of ecological communities have been based on two ecological properties: dynamical stability and feasibility. The former is typically regarded as the capacity of a community to return to an original equilibrium state after a perturbation in species abundances and is usually linked to the strength of interspecific interactions. The latter is the capacity to sustain positive abundances on all its constituent species and is linked to both interspecific interactions and species demographic characteristics. Over the last 40 years, theoretical research in ecology has emphasized the search for conditions leading to the dynamical stability of ecological communities, while the conditions leading to feasibility have been overlooked. However, thus far, we have no evidence of whether species interactions are more conditioned by the community's need to be stable or feasible. Here, we introduce novel quantitative methods and use empirical data to investigate the consequences of species interactions on the dynamical stability and feasibility of mutualistic communities. First, we demonstrate that the more nested the species interactions in a community are, the lower the mutualistic strength that the community can tolerate without losing dynamical stability. Second, we show that high feasibility in a community can be reached either with high mutualistic strength or with highly nested species interactions. Third, we find that during the assembly process of a seasonal pollinator community located at The Zackenberg Research Station (northeastern Greenland), a high feasibility is reached through the nested species interactions established between newcomer and resident species. Our findings imply that nested mutualistic communities promote feasibility over stability, which may suggest that the former can be key for community persistence.
Data from: A highly sensitive LC-MS/MS method to determine novel Bruton's tyrosine kinase inhibitor spebrutinib: application to metabolic stability evaluation
Spebrutinib (SBT) is a Bruton's tyrosine kinase inhibitor. SBT is currently in phase II and phase I clinical trials for the management of rheumatoid arthritis and chronic lymphocytic leukaemia, respectively. We developed and validated a liquid chromatography tandem mass spectrometry analytical method to quantify SBT and investigate its metabolic stability. SBT and the naquotinib as internal standard were isocratically eluted on a C18 column. The linearity of the developed method is 5-500 ng/mL (r2≥ 0.9999) in the human liver microsomes (HLMs) matrix. Good sensitivity was approved by the very low limit of detection (0.39 ng/mL). Inter- and intra- assay accuracy values of -1.41 to 12.44 and precision values of 0.71 to 4.78%, were obtained. SBT was found to have an in vitro half-life (82.52 min) and intrinsic clearance (8.4 µL/min/mg) as computed following its incubation with HLMs. The latter finding, hypothesize that SBT could be deliberately expelled from the body unlike other related tyrosine kinase inhibitors. So, drug plasma level and kidney function should be monitored because of potential bioaccumulation. To the best of our knowledge, this is considered the first analytical method for SBT quantification using LC-MS/MS with application to metabolic stability evaluation.
Data from: The action of stabilizing selection, mutation and drift on epistatic quantitative traits
For a quantitative trait under stabilizing selection, the effect of epistasis on its genetic architecture and on the changes of genetic variance caused by bottlenecking were investigated using theory and simulation. Assuming empirical estimates of the rate and effects of mutations and the intensity of selection, we assessed the impact of two-locus epistasis (synergistic/antagonistic) among linked or unlinked loci on the distribution of effects and frequencies of segregating loci in populations at the mutation-selection-drift balance. Strong pervasive epistasis did not modify substantially the genetic properties of the trait and, therefore, the most likely explanation for the low amount of variation usually accounted by the loci detected in genome-wide association analyses is that many causal loci will pass undetected. We investigated the impact of epistasis on the changes in genetic variance components when large populations were subjected to successive bottlenecks of different sizes, considering the action of genetic drift, operating singly (D), or jointly with mutation (MD) and selection (MSD). An initial increase of the different components of the genetic variance, as well as a dramatic acceleration of the between-line divergence, were always associated with synergistic epistasis but were strongly constrained by selection.
Data from: Resource-driven changes to host population stability alter the evolution of virulence and transmission
What drives the evolution of parasite life history traits? Recent studies suggest that feedbacks between within-host and between-host processes can provide key insight into both disease dynamics and parasite evolution. Still, it remains difficult to understand how to mechanistically connect these cross-scale feedbacks, particularly under non-equilibrium conditions; many natural host populations inherently fluctuate and parasites themselves can strongly alter the stability of host populations. Here, we develop a general model framework that mechanistically links resources to parasite evolution across a gradient of stable and unstable conditions. First, we dynamically link resources and between-host (host density, stability, transmission) processes to virulence evolution. Then, we consider a 'nested' model where population-level processes (transmission and virulence) depend on resource-driven changes to individual-level (within-host) processes (energetics, immune function, parasite production). Contrary to 'non-nested' model predictions, the nested model reveals complex effects of host population dynamics on parasite evolution, including regions of evolutionary bistability, where evolution can push parasites toward strongly or weakly stabilizing strategies. This bistability results from tension between resource-driven changes to host density, host immune function, and parasite production. Together, these results highlight how cross-scale feedbacks can provide key insights into the structuring role of parasites and parasite evolution.
Data from: Phylogenetic stability, tree shape, and character compatibility: a case study using early tetrapods
Phylogenetic tree shape varies as the evolutionary processes affecting a clade change over time. In this study, we examined an empirical phylogeny of fossil tetrapods during several time intervals, and studied how temporal constraints manifested in patterns of tree imbalance and character change. The results indicate that the impact of temporal constraints on tree shape is minimal and highlights the stability through time of the reference tetrapod phylogeny. Unexpected values of imbalance for Mississippian and Pennsylvanian time slices strongly support the hypothesis that the Carboniferous was a period of explosive tetrapod radiation. Several significant diversification shifts take place in the Mississippian and underpin increased terrestrialization among the earliest limbed vertebrates. Character incompatibility is relatively high at the beginning of tetrapod history, but quickly decreases to a relatively stable lower level, relative to a null distribution based on constant rates of character change. This implies that basal tetrapods had high, but declining, rates of homoplasy early in their evolutionary history, although the origin of Lissamphibia is an exception to this trend. The time slice approach is a powerful method of phylogenetic analysis and a useful tool for assessing the impact of combining extinct and extant taxa in phylogenetic analyses of large and speciose clades.
Data from: Control at stability's edge minimizes energetic costs: expert stick balancing
Stick balancing on the fingertip is a complex voluntary motor task that requires the stabilization of an unstable system. For seated expert stick balancers, the time delay is 0.23 s, the shortest stick that can be balanced for 240 s is 0.32 m and there is a Embedded Image° dead zone for the estimation of the vertical displacement angle in the saggital plane. These observations motivate a switching-type, pendulum–cart model for balance control which uses an internal model to compensate for the time delay by predicting the sensory consequences of the stick's movements. Numerical simulations using the semi-discretization method suggest that the feedback gains are tuned near the edge of stability. For these choices of the feedback gains, the cost function which takes into account the position of the fingertip and the corrective forces is minimized. Thus, expert stick balancers optimize control with a combination of quick manoeuvrability and minimum energy expenditures.
Data from: Coexistence of evolving bacteria stabilized by a shared Black Queen function
The Black Queen Hypothesis (BQH) was originally proposed to explain the dependence of some marine bacteria on helper organisms for protection from hydrogen peroxide (HOOH). The BQH predicts that selection for the evolutionary loss of leaky functions from individuals can produce commensal or mutualistic interactions. We demonstrated the leakiness of HOOH detoxification by complementing a HOOH-sensitive Escherichia coli mutant with a plasmid-encoded HOOH-detoxifying enzyme, KatG, and then evolving populations founded by this strain in two environments. When HOOH was absent, plasmid-carrying cells were outcompeted by plasmid-free segregants, reflecting the high cost of KatG expression. However, plasmid-carrying and plasmid-free cells coexisted for at least 1,200 generations in three replicate populations evolved in the presence of HOOH, although their relative proportions fluctuated as beneficial mutations arose in one type or the other. Evolved plasmid-bearing cells reduced the cost of plasmid carriage even as they increased the rate of HOOH removal relative to the ancestor. Meanwhile, plasmid-free cells remained dependent on HOOH detoxification by the plasmid-bearing cells. These results demonstrate that partitioning of a Black Queen function can enable the stable coexistence of very similar organisms, even in this most restrictive case where the two types are competing for a single resource.
Data from: Temporal stability in a male African elephant social network
Social animals live in complex and variable socio-ecological environments where individuals adapt their behaviour to local conditions. Recently, there have been calls for studies of animal social networks to take account of temporal dynamics in social relationships as these have implications for the spread of information and disease, group cohesion, and the drivers of sociality, and there is evidence that maintaining stable social relationships has fitness benefits. It has recently been recognised that male elephants form strong social bonds with other males. The nature of these relationships, and thus network structure, may vary over time in response to environmental conditions and as individuals age. Using social network analysis, we examine the stability of relationships and network centrality in a population of male African elephants. Our results suggest that males may maintain stable social relationships with others over time. Older males show greater stability in network centrality than younger males, suggesting younger males face uncertainty in transitioning to adult society. For elephants, where older individuals function as social repositories of knowledge, maintaining a social network underpinned by older males could be of particular importance.
Data from: Reduced genetic variance among high fitness individuals: inferring stabilizing selection on male sexual displays in D. serrata
Directional selection is prevalent in nature yet phenotypes tend to remain relatively constant, suggesting a limit to trait evolution. However, the genetic basis of this limit is unresolved. Given widespread pleiotropy, opposing selection on a trait may arise from the effects of the underlying alleles on other traits under selection, generating net stabilizing selection on trait genetic variance. These pleiotropic costs of trait exaggeration may arise through any number of other traits, making them hard to detect in phenotypic analyses. Stabilizing selection can be inferred, however, if genetic variance is greater among low compared to high fitness individuals. We extend a recently suggested approach to provide a direct test of a difference in genetic variance for a suite of cuticular hydrocarbons (CHCs) in Drosophila serrata. Despite strong directional sexual selection on these traits, genetic variance differed between high and low fitness individuals and was greater among the low fitness males for seven of eight CHCs, significantly more than expected by chance. Univariate tests of a difference in genetic variance were non-significant but likely have low power. Our results suggest that further CHC exaggeration in D. serrata in response to sexual selection is limited by pleiotropic costs mediated through other traits.
Data from: Take this broken tail and learn to jump: the ability to recover from reduced in-air stability in tailless green anole lizards (Anolis carolinensis [Squamata: Dactyloidae])
Locomotion is involved in various fitness related tasks, such as foraging, acquiring mates and escaping from predators. Despite the importance of locomotor performance in determining fitness, animals often encounter situations in nature during which their locomotor performance is severely compromised. For animals that actively discard appendages as an antipredator strategy, the loss of appendages can cause a severe reduction in locomotor performance. However, whether animals can compensate for the impact on locomotor performance after autotomy is still unclear. A previous study has shown that tailless green anole lizards suffered from reduced in-air stability during jumping. In this study, we monitored jump kinematics in three groups of Anolis carolinensis for five consecutive weeks to test two hypotheses. First, whether tailless green anoles can recover from reduced in-air stability before their tails can regenerate. Second, whether gaining locomotor experience facilitates locomotor recovery. Our results revealed extensive individual variation in the ability to compensate for reduced in-air stability. Some individuals did improve in-air stability during the study period, whereas others showed no sign of improvement. Moreover, the acquisition of locomotor experience did not facilitate the recovery process. Our findings suggested that tail autotomy in green anoles likely imposes a long-term fitness disadvantage. The utility of other compensatory mechanisms, such as altering behavior, might play a role in natural populations to minimize the impact of autotomy on individual fitness. Our findings also shed some light on the independent evolutionary losses of the ability to autotomize within lizards. Comparative studies which test whether species that autotomize more frequently/easily can better compensate for the effect of autotomy would be a fruitful direction of future research.
Data from: Stability of Cladistic Relationships between Cetacea and Higher-Level Artiodactyl Taxa
Over the past ten years, the phylogenetic relationships among higher level artiodactyl taxa have been examined with multiple data sets. Many of these data sets suggest that Artiodactyla (even-toed ungulates) is paraphyletic and that Cetacea (whales) represents a highly derived "artiodactyl" subgroup. In this report, phylogenetic relationships between Cetacea and artiodactyls are tested with a combination of 15 published data sets plus new DNA sequence data from two nuclear loci, interphotoreceptor retinoid binding protein (IRBP) and von Willebrand factor (vWF). The addition of the IRBP and vWF character sets disrupts none of the relationships supported by recent cladistic analyses of the other 15 data sets. Simultaneous analyses support three critical clades: (Cetacea + Hippopotamidae), (Cetacea + Hippopotamidae + Ruminantia), and (Cetacea + Hippopotamidae + Ruminantia + Suina). Perturbations of the combined matrix show that the above clades are stable to a variety of disturbances. A chronicle of phylogenetic results over the past three years suggests that cladistic relationships between Cetacea and artiodactyls have been stable to increased taxonomic sampling and to the addition of over 1,400 informative characters from 15 data sets.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.