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Data from: Polyphasic data support the splitting of Aspergillus candidus into two species; proposal of Aspergillus dobrogensis sp. nov.
Aspergillus candidus is a species frequently isolated from stored grain, food, indoor environments, soil and occasionally also from clinical material. Recent bioprospecting studies highlighted the potential of using A. candidus and its relatives in various industrial sectors as a result of their significant production of enzymes and bioactive compounds. A high genetic variability was observed among A. candidus isolates originating from various European countries and the USA, that were mostly isolated from indoor environments, caves and clinical material. The A. candidus sensu lato isolates were characterized by DNA sequencing of four genetic loci, and agreement between molecular species delimitation results, morphological characters and exometabolite spectra were studied. Classical phylogenetic methods (maximum likelihood, Bayesian inference) and species delimitation methods based on the multispecies coalescent model supported recognition of up to three species in A. candidus sensu lato. After evaluation of phenotypic data, a broader species concept was adopted, and only one new species, Aspergillus dobrogensis, was proposed. This species is represented by 22 strains originating from seven countries (ex-type strain CCF 4651T=NRRL 62821T=IBT 32697T=CBS 143370T) and its differentiation from A. candidus is relevant for bioprospecting studies because these species have different exometabolite profiles. Evaluation of the antifungal susceptibility of section Candidi members to six antifungals using the reference EUCAST method showed that all species have low minimum inhibitory concentrations for all tested antifungals. These results suggest applicability of a wide spectrum of antifungal agents for treatment of infections caused by species from section Candidi.
Bodhgaya, exhibition proposal
<p>Precious treasures from the Diamond Throne, exhibition proposal with sections and object lists.</p>
FIGURE 1 in Ectonocryptoides quadrimeropus, a new centipede genus and species from Jalisco, Mexico; proposal of Ectonocryptopinae, analysis of subfamilial relationships, and a key to subfamilies and genera of the Scolopocryptopidae (Scolopendromorpha)
FIGURE 1. Ectonocryptoides quadrimeropus, lateral view of syntype with one attached ultimate leg.
Supplementary material 1 from: Mantelatto FL, Pileggi LG, Pantaleão JAF, Magalhães C, Villalobos JL, Alvarez F (2021) Multigene phylogeny and taxonomic revision of American shrimps of the genus Cryphiops Dana, 1852 (Decapoda, Palaemonidae) implies a proposal for reversal of precedence with Macrobrachium Spence Bate, 1868. ZooKeys 1047: 155-198. https://doi.org/10.3897/zookeys.1047.66933
Table S1
Figure 1 from: Mantelatto FL, Pileggi LG, Pantaleão JAF, Magalhães C, Villalobos JL, Alvarez F (2021) Multigene phylogeny and taxonomic revision of American shrimps of the genus Cryphiops Dana, 1852 (Decapoda, Palaemonidae) implies a proposal for reversal of precedence with Macrobrachium Spence Bate, 1868. ZooKeys 1047: 155-198. https://doi.org/10.3897/zookeys.1047.66933
Figure 1 Concatenated phylogenetic tree of selected species of Macrobrachium representing wide geographical distribution of the group, based on the method of maximum likelihood of the 16S rDNA, COI mtDNA, 18S nDNA and H3 nDNA genes. Numbers on nodes refer to significance values of 1000 bootstrap replicates; values ≤ 50% are not shown. ARG: Argentina; BR: Brazil; CH: Chile; CR: Costa Rica; JAP: Japan; MX: México; NIG: Nigeria; PN: Panamá; VZ: Venezuela. ALD: Abbreviated larval development. ELD: Extended larval development. Blue: species from Indo-Pacific. Red: species from Africa. Green: former Cryphiops species.
FIGURES 202–203. Female terminalia. 202 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 202–203. Female terminalia. 202. Colonomyia freemani, sp. n. 203. Chiletricha marginata.
FIGURE 118 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURE 118. Main changes in the wing venation along the evolution of the Mycetophiliformia.
FIGURES 91, 92 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 91, 92. Different states of character 29. 91. Hesperinus. 92. Ohakunea.
FIGURES 79, 80 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 79, 80. Different states of character 24. 79. Pachyneura. 80. Chiletricha.
FIGURES 77, 78 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 77, 78. Different states of character 23. 77. Trichocera. 78. Trichomegalosphys.
FIGURES 81, 82 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 81, 82. Different states of character 25. 81. Pachyneura. 82. Chiletricha.
FIGURES 83, 84 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 83, 84. Different states of character 26. 83. Hesperinus. 84. Ohakunea.
FIGURES 20–21 in Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)
FIGURES 20–21. Colonomyia brasiliana, sp. n. 20. Thorax. 21. Male terminalia.
Fig. 3 in Proposal of two new genera of the family Zosimeidae Seifried (Copepoda: Harpacticoida): Heterozosime gen. nov. and Acritozosime gen. nov.
Fig. 3. Heterozosime tenuis gen. et sp. nov. Holotype, ♀ (MABIK CR00247785). A. Urosome excluding P5-bearing somite, ventral view. B. Posterior end of penultimate somite, anal somite, and caudal rami, dorsal view. C. Genital field, ventral view. D. P5.
Table e-1 and e-references for: Neurogenic dysphagia: a systematic review and proposal of a classification system
<p><b>Objective:</b> Introduction of a phenotypic classification of dysphagia with differential diagnostic implications and its validation in different disease groups using videos of flexible endoscopic evaluation of swallowing (FEES).</p> <p><b>Methods: </b>A systematic literature review was performed to summarize disease-typical FEES-findings.<b> </b>In an interdisciplinary team, a FEES-based classification of neurogenic dysphagia was developed which distinguishes different dysphagia phenotypes. The classification was validated using 1012 randomly selected FEES videos of patients with various neurological disorders. Chi-square tests were applied to investigate the relationship between the disease groups and each dysphagia phenotype.</p> <p><b>Results: </b>Seven dysphagia phenotypes were defined and all phenotypes were significantly associated with specific neurological disease groups: (1) "Premature bolus spillage" and (2) "delayed swallowing reflex" occurred mainly in stroke patients, (3) "predominance of residue in the valleculae" was most common in Parkinson's disease, (4) "predominance of residue in the piriform sinus" occurred only in myositis, motoneuron disease and brainstem stroke patients, (5) "pharyngolaryngeal movement disorder" was found in atypical Parkinsonian syndromes and stroke patients, (6) "fatigable swallowing weakness" was common in patients with myasthenia gravis, and (7) "complex disorder" with a heterogeneous dysphagia pattern was the leading mechanism in amyotrophic later sclerosis. The interrater reliability showed a strong agreement (kappa = 0.84).</p> <p><b>Conclusion: </b>Neurogenic dysphagia is not a mere symptom, but a multi-etiological syndrome with different phenotypic patterns depending on the underlying disease. Dysphagia phenotypes can facilitate differential diagnosis in patients with dysphagia of unclear etiology.</p>
FIGURE 100 in A revision of Aleurodicus Douglas (Sternorrhyncha, Aleyrodidae), with two new genera proposed for palaeotropical natives and an identification guide to world genera of Aleurodicinae
FIGURE 100 Paraleyrodes pseudonaranjae Martin, paratype puparium, Hong Kong.
FIGURE 72 in A revision of Aleurodicus Douglas (Sternorrhyncha, Aleyrodidae), with two new genera proposed for palaeotropical natives and an identification guide to world genera of Aleurodicinae
FIGURE 72 Aleurodicus decemensis sp. nov., holotype puparium, Panamá.
Figure 10 in Two new deep-sea species of Argestidae and Ameiridae (Copepoda: Harpacticoida) from the Eastern Mexican Pacific and Gulf of California, with proposal of a new genus of the family Argestidae
Figure 10. Argestigens celibis sp. n., male holotype. (a) P3, anterior; (b) P4, anterior.
Figure 6 in Two new deep-sea species of Argestidae and Ameiridae (Copepoda: Harpacticoida) from the Eastern Mexican Pacific and Gulf of California, with proposal of a new genus of the family Argestidae
Figure 6. Argestes analongises sp. n., female holotype. P5, anterior.
Figure 2 in Two new deep-sea species of Argestidae and Ameiridae (Copepoda: Harpacticoida) from the Eastern Mexican Pacific and Gulf of California, with proposal of a new genus of the family Argestidae
Figure 2. Argestes analongises sp. n., female holotype. (a) antennule; (b) antenna.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.