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7,883 results for “Tropic”
Bats use live fences to move between tropical dry forest remnants
<p>Linear features can benefit wildlife by assisting animal movement. We captured bats along barbed-wire and live-tree fences connecting Tropical Dry Forest patches in Nicaragua. Bat species richness and captures were higher along live fences but we noted differences in sex ratios, richness, and species composition compared to surrounding natural forests.</p>
Data from: Three decades of annual growth, mortality, physical condition, and microsite for ten tropical rainforest tree species
In lowland tropical rainforest, hundreds of tree species typically occur within mesoscale landscapes (50-500 ha). There is no consensus ecological theory that accounts for the coexistence of so many species with similar morphologies and the same fundamental requirements of light, nutrients, water, and physical space. In part this is due to the limited understanding of post-establishment ecology for the vast majority of tropical tree species. Of even more concern is the lack of understanding of how these trees are responding to on-going atmospheric and climatic changes. Here we present long-term data on the post-establishment ecology of ten species of tropical rainforest trees that span a broad life-history spectrum. The study site was upland (non-swamp) old-growth tropical wet forest at the La Selva Biological Station (N.E. Costa Rica). Focal individuals from established seedlings to mature trees were assessed annually, with an emphasis on accuracy and long-term consistency of the observations. The annual time-step, rare for longterm studies in tropical rainforest, captures the typically abrupt changes in forest structure and light environments, the frequent instances of major physical damage, and the trees' responses to these events and to interannual and long-term climatic variation. With the completion of the study in 2016, the data for survivorship, growth, and microsite conditions span 4499 individuals and 34 years. The first ten years of these data were published as an Ecology/Ecological Archives data paper in 2000 (Clark and Clark 2000), with two subsequent update publications (Clark and Clark 2006, 2012). This final update adds the final six years of observations, digitized field comments, and histories of points of measurement on the trees. The metadata now include the scanned original field data-sheets for the entire study and a narrative detailing the annual qa/qc of the data. The data set is unique for its scope (years of continuous annual measurements, number of monitored individuals), the in-depth documentation, and the unrestricted data access. The data have been used to study life history patterns, tree ecology through ontogeny, and effects on tree performance from interannual and long-term climatic and atmospheric change. They have also contributed to numerous remote-sensing studies.
Data from: Genomic signatures of sympatric speciation with historical and contemporary gene flow in a tropical anthozoan (Hexacorallia: Actiniaria)
Sympatric diversification is increasingly thought to have played an important role in the evolution of biodiversity around the globe. However, an in situ sympatric origin for co-distributed taxa is difficult to demonstrate empirically because different evolutionary processes can lead to similar biogeographic outcomes- especially in ecosystems that can readily facilitate secondary contact due to a lack of hard barriers to dispersal. Here we use a genomic (ddRADseq), model-based approach to delimit a species complex of tropical sea anemones that are co-distributed on coral reefs throughout the Tropical Western Atlantic. We use coalescent simulations in fastsimcoal2 to test competing diversification scenarios that span the allopatric-sympatric continuum. We recover support that the corkscrew sea anemone Bartholomea annulata (Le Sueur, 1817) is a cryptic species complex, co-distributed throughout its range. Simulation and model selection analyses suggest these lineages arose in the face of historical and contemporary gene flow, supporting a sympatric origin, but an alternative secondary contact model also receives appreciable model support. Leveraging the genome of Exaiptasia diaphana we identify five loci under divergent selection between cryptic B. annulata lineages that fall within mRNA transcripts or CDS regions. Our study provides a rare empirical, genomic example of sympatric speciation in a tropical anthozoan. Finally, these data represent the first range-wide molecular study of any tropical sea anemone, underscoring that anemone diversity is under described in the tropics, and highlighting the need for additional systematic studies into these ecologically and economically important species.
Fig. 3 in Fish functional groups in a tropical wetland of the Yucatan Peninsula, Mexico
Fig. 3. Relative biomass abundance of functional groups among habitats and seasons.
Fig. 1 in Fish functional groups in a tropical wetland of the Yucatan Peninsula, Mexico
Fig. 1. Geographic location of the study site (white star) in Sian Ka'an Biosphere Reserve, Mexico.
Data from: Nest structure affects auditory and visual detectability, but not predation risk, in a tropical songbird community
1. Offspring mortality varies dramatically among species with critical demographic and evolutionary ramifications, yet the causes of this variation remain unclear. Nests are widely used for breeding across taxa and thought to influence offspring mortality risk. Traditionally, more complex, enclosed nest structures are thought to reduce offspring predation by reducing the visibility of nest contents and muffling offspring sounds compared to open nests. Direct tests of the functional bases for nest structure influences on predation risk are lacking. 2. We used experiments and 10 years of observational data to examine how nest structure influences nest predation risk in a diverse community of tropical songbirds. First, we examined how nest size was related to nest structure and nest predation rates across species. Second, we assessed how nest structure influences the detectability of nestling begging calls both in field and laboratory settings. Finally, we examined how the acoustic properties of different nest structures influence nest predation risk. Specifically, we experimentally broadcast begging calls from open and enclosed nests to determine how auditory cues and nest structure interact to affect predation on plasticine and quail eggs. We also tested whether nest structure was associated with differences in nest predation rates between the incubation (no begging cues) and nestling (begging cues) stages. 3. We found that enclosed nests are larger than open nests after accounting for adult size, and larger nests had increased predation rates. Moreover, enclosed nests did not consistently alter nestling begging calls in ways that reduce the likelihood of predation compared to open nests. Indeed, begging cues increased predation rates for enclosed but not open cup nests in our playback experiment, and nest predation rates showed greater increases after hatching in enclosed than open cup nests. 4. Ultimately, enclosed nests do not necessarily provide greater predation benefits than open nests in contrast to long standing theory.
Data from: High specialization and limited structural change in plant‐herbivore networks along a successional chronosequence in tropical montane forest
Secondary succession is well‐understood, to the point of being predictable for plant communities, but the successional changes in plant‐herbivore interactions remains poorly explored. This is particularly true for tropical forests, despite the increasing importance of early successional stages in tropical landscapes. Deriving expectations from successional theory, we examine properties of plant‐herbivore interaction networks while accounting for host phylogenetic structure along a succession chronosequence in montane rainforest in Papua New Guinea. We present one of the most comprehensive successional investigations of interaction networks, equating to >40 person years of field sampling, and one of the few focused on montane tropical forests. We use a series of nine 0.2ha forest plots across young secondary, mature secondary and primary montane forest, sampled almost completely for woody plants and larval leaf chewers (Lepidoptera), using forest felling. These networks comprised of 12,357 plant‐herbivore interactions and were analysed using quantitative network metrics, a phylogenetically controlled host‐use index and a qualitative network beta diversity measure. Network structural changes were low and specialisation metrics surprisingly similar throughout succession, despite high network beta diversity. Herbivore abundance was greatest in the earliest stages, and hosts here had more species‐rich herbivore assemblages, presumably reflecting higher palatability due to lower defensive investment. All herbivore communities were highly specialised, using a phylogenetically narrow set of hosts, while host phylogenetic diversity itself decreased throughout the chronosequence. Relatively high phylogenetic diversity, and thus high diversity of plant defenses, in early succession forest may result in herbivores feeding on fewer hosts than expected. Successional theory, derived primarily from temperate systems, is limited in predicting tropical host‐herbivore interactions. All succession stages harbour diverse and unique interaction networks, which together with largely similar network structures and consistent host use patterns, suggests general rules of assembly may apply to these systems.
Data from: Divergent rates of change between tree cover types in a tropical pastoral region
Context: Forest cover change analyses have revealed net forest gain in many tropical regions. While most analyses have focused solely on forest cover, trees outside forests are vital components of landscape integrity. Quantifying regional-scale patterns of tree cover change, including non-forest trees, could benefit forest and landscape restoration (FLR) efforts. Objectives: We analyzed tree cover change in Southwestern Panama to quantify: 1) patterns of change from 1998-2014, 2) differences in rates of change between forest and non-forest classes, and 3) the relative importance of social-ecological predictors of tree cover change between classes. Methods: We digitized tree cover classes, including dispersed trees, live fences, riparian forest, and forest, in very high resolution images from 1998-2014. We then applied hurdle models to relate social-ecological predictors to the probability and amount of tree cover gain. Results: All tree cover classes increased in extent, but gains were highly variable between classes. Non-forest tree cover accounted for 21% of tree cover gains, while riparian trees constituted 31% of forest cover gains. Drivers of tree cover change varied widely between classes, with opposite impacts of some social-ecological predictors on non-forest and forest cover. Conclusions: We demonstrate that key drivers of forest cover change, including topography, road distance and historical forest cover, do not explain rates of non-forest tree cover change. Consequently, predictions from medium-resolution forest cover change analyses may not apply to finer-scale patterns of tree cover. We highlight the opportunity for FLR projects to target tree cover classes adapted to local social and ecological conditions.
Data from: Genomics meets applied ecology: characterizing habitat quality for sloths in a tropical agroecosystem
Understanding how habitat quality in heterogeneous landscapes governs the distribution and fitness of individuals is a fundamental aspect of ecology. While mean individual fitness is generally considered a key to assessing habitat quality, a comprehensive understanding of habitat quality in heterogeneous landscapes requires estimates of dispersal rates among habitat types. The increasing accessibility of genomic approaches, combined with field-based demographic methods, provides novel opportunities for incorporating dispersal estimation into assessments of habitat quality. In this study, we integrated genomic kinship approaches with field-based estimates of fitness components and Approximate Bayesian Computation (ABC) procedures to estimate habitat-specific dispersal rates and characterize habitat quality in two-toed sloths (Choloepus hoffmanni) occurring in a Costa Rican agricultural ecosystem. Field-based observations indicated that birth and survival rates were similar in a sparsely-shaded cacao farm and adjacent cattle pasture-forest mosaic. Sloth density was threefold higher in pasture compared to cacao, whereas home range size and overlap were greater in cacao compared to pasture. Dispersal rates were similar between the two habitats, as estimated using ABC procedures applied to the spatial distribution of pairs of related individuals identified using 3,431 SNP and 11 microsatellite locus genotypes. Our results indicate that crops produced under a sparse overstory can, in some cases, constitute lower quality habitat than pasture-forest mosaics for sloths, perhaps because of differences in food resources or predator communities. Finally, our study demonstrates that integrating field-based demographic approaches with genomic methods can provide a powerful means for characterizing habitat quality for animal populations occurring in heterogeneous landscapes.
Data from: Effects of dry-season irrigation on leaf physiology and biomass allocation in tropical lianas and trees
Lianas are more abundant in seasonal forests than in wetter forests and are thought to perform better than trees when light is abundant and water is limited. We tested the hypothesis that lianas perform better than trees during seasonal drought using a common garden experiment with 12 taxonomically diverse species (6 liana and 6 tree species) in 12 replicated plots. We irrigated six of the plots during the dry season for four years, while the remaining 6 control plots received only ambient rainfall. In year 5, we measured stem diameters for all individuals and harvested above- and belowground biomass for a subset of individuals to quantify absolute growth and biomass allocation to roots, stems, and leaves, as well as total root length and maximum rooting depth. We also measured photosynthesis, intrinsic water use efficiency (iWUE), pre-dawn and midday water potential, and a set of functional and hydraulic traits. During the peak of the dry season, lianas in control plots had 54% higher predawn leaf water potentials (ΨPD), and 45% higher photosynthetic rates than trees in control plots. By contrast, during the peak of the wet season, these physiological differences between lianas and trees become less pronounced and, in some cases, even disappeared. Trees had higher SLA than lianas; however, no other functional trait differed between growth forms. Trees responded to the irrigation treatment with 15% larger diameters and 119% greater biomass than trees in control plots. Liana growth, however, did not respond to irrigation; liana diameter and biomass were similar in control and irrigation plots, suggesting that lianas were far less limited by soil moisture than were trees. Contrary to previous hypotheses, lianas did not have deeper roots than trees; however, lianas had longer roots per stem diameter than did trees. Our results support the hypothesis that lianas perform better and experience less physiological stress than trees during seasonal drought, suggesting clear differences between growth forms in response to altered rainfall regimes. Ultimately, better dry-season performance may explain why liana abundance peaks in seasonal forests compared to trees, which peak in abundance in less seasonal, wetter forests.
Data from: Factors influencing herpetofauna abundance and diversity in a tropical agricultural landscape mosaic
<p>Agricultural intensification and the associated factors, including land transformation, are among the major global threats affecting biodiversity especially herpetofauna. However, little information is available about how different factors shape herpetofauna species assemblages in agricultural landscape at different spatial scales from patch (125 – 250m) to the landscape (500 – 1000m).</p> <p>We assessed the diversity of amphibians and reptiles in areas under low and high degrees of agricultural intensification and explored different factors regulating diversity at different spatial scales using four sampling methods.</p> <p>Diversity and abundance of amphibians varied significantly between the two zones, but not for reptiles. Agricultural intensification Index (AII), calculated based on agrochemical use and area under agriculture at 250m scale, seemed to affect amphibians both at patch as well as at 500m and 1000m landscape scales. The AII influenced reptilian diversity only at patch and 500m scales. Vicinity of natural forest had a stronger influence on reptilian abundance. Semi-natural vegetation impacted herpetofauna diversities at larger spatial scales. The extent of water bodies influenced the reptilian abundance at 250m patch scale and amphibian abundance both at 250m and 1000m scale. Fallow lands affected only reptilian diversity at all spatial scales. Plantation affected amphibian at all scales but reptiles only at the landscape scale. Habitat heterogeneity regulated only amphibian diversity.</p> <p>These results highlight the fact that different patch and landscape-scale factors regulate the diversity of reptiles and amphibians differentially. Such scale specific information will crucially inform future conservation action for the herpetofauna in the agricultural landscape.</p>
Data from: Forest fragmentation and loss reduce richness, availability, and specialization in tropical hummingbird communities
Hummingbirds are important pollinators of many native Neotropical plants but their abundance and diversity in landscapes dominated by intensive human uses such as agriculture have rarely been examined, despite such land-uses prevailing in the tropics. We examined how tropical deforestation affects hummingbird community structure in premontane forest patches embedded in a tropical countryside of Coto Brus Canton, Costa Rica. We captured hummingbirds in fourteen landscapes representing a gradient in patch size and forest amount, and tested for the effects of these variables on (1) hummingbird captures at flowers (pollinator availability); (2) species richness; and (3) filtering of functional traits. After accounting for sampling effects, both hummingbird availability and species richness declined by 40% and 50%, respectively, across the gradient in deforestation that we observed (9–66% forest within 1000 m). Focal patch size was the strongest predictor, even after statistically accounting for the amount of forest and matrix composition of landscapes. These reductions in availability and richness were well predicted by functional traits; morphologically specialized species with the capacity to transport long-distance outcrossed pollen and low functional redundancy within the pollinator network showed the greatest sensitivity to landscape change. We hypothesize that declines in hummingbird availability, diversity, and functional traits are important mechanisms driving the observed pollen limitation of ornithophilous flowers in fragmented tropical landscapes. Efforts to conserve large forest patches and enhance matrix permeability are critical for maintaining forest hummingbird communities and pollination services under current and predicted deforestation regimes.
Data from: Scale‐dependent spatial patterns in benthic communities around a tropical island seascape
Understanding and predicting patterns of spatial organization across ecological communities is central to the field of landscape ecology, and a similar line of inquiry has begun to evolve sub‐tidally among seascape ecologists. Much of our current understanding of the processes driving marine community patterns, particularly in the tropics, has come from small‐scale, spatially‐discrete data that are often not representative of the broader seascape. Here we expand the spatial extent of seascape ecology studies and combine spatially‐expansive in situ digital imagery, oceanographic measurements, spatial statistics, and predictive modeling to test whether predictable patterns emerge between coral reef benthic competitors across scales in response to intra‐island gradients in physical drivers. We do this around the entire circumference of a remote, uninhabited island in the central Pacific (Jarvis Island) that lacks the confounding effects of direct human impacts. We show, for the first time, that competing benthic groups demonstrate predictable scaling patterns of organization, with positive autocorrelation in the cover of each group at scales < ~1 km. Moreover, we show how gradients in subsurface temperature and surface wave power drive spatially‐abrupt transition points in group dominance, explaining 48 – 84% of the overall variation in benthic cover around the island. Along the western coast, we documented ten times more sub‐surface cooling‐hours than any other part of the coastline, with events typically resulting in a drop of 1 – 4°C over a period of < 5 hr. These high frequency temperature fluctuations are indicative of upwelling induced by internal waves and here result in localized nitrogen enrichment (NO2 + NO3) that promotes hard coral dominance around 44% of the island's perimeter. Our findings show that, in the absence of confounding direct human impacts, the spatial organization of coral reef benthic competitors are predictable and somewhat bounded across the seascape by concurrent gradients in physical drivers.
Data from: A multilayer network in an herbaceous tropical community reveals multiple roles of floral visitors
<p>Flower visitation does not necessarily mean pollination. In this sense, floral visitors can either act as mutualists (pollinators) or antagonists (floral robbers/thieves), indicating that these interactions are part of a continuum and that a visitor species can present multiple behaviours. We included both mutualistic and antagonistic interactions between plants and floral visitors in a multilayer network to explore the consequences (at the community level) of the dual roles played by flower visitors. The multilayer network of interactions was formed by herbaceous plants (12 species) and insects that visited their flowers (21 species) in an area of Atlantic Forest in Brazil from Jul 2015 to May 2016. The two layers presented similar structures, with high overlap between them. Similar to what was expected, the antagonistic layer was more modular and specialized than the mutualistic layer. Some visitor species exhibited highly central, dual roles, acting as both antagonists and mutualists. Most behaved consistently as mutualists in all their visits, especially bees, which formed a predominantly mutualistic group. Butterflies represented a mixed group in relation to their visits and flies made more antagonistic visits. This research represents an important step towards understanding the role of mutualisms and antagonisms in the structure of interaction networks between herbaceous plants and floral visitors in tropical environments.</p>
Data from: Experimental amelioration of harsh weather speeds growth and development in a tropical montane songbird
<p>Organisms living at high elevations generally grow and develop slower than those at lower elevations. Slow montane ontogeny is thought to be an evolved adaptation to harsh environments that improve juvenile quality via physiological tradeoffs. However, slower montane ontogeny may also reflect proximate influences of harsh weather on parental care and offspring development. We experimentally heated and protected nests from rain to ameliorate harsh montane weather conditions for Mountain Blackeyes (<i>Chlorocharis emiliae</i>), a montane songbird living at ca. 3200 m asl in Malaysian Borneo. This experiment was designed to test if cold and wet montane conditions contribute to parental care and post-natal growth and development rates at high elevations. We found that parents increased provisioning and reduced time spent warming offspring, which grew faster and departed the nest earlier compared to unmanipulated nests. Earlier departure reduces time-dependent predation risk, benefitting parents and offspring. These plastic responses highlight the importance of proximate weather contributions to broad patterns of montane ontogeny and parental care.</p>
Predictability of temporal variation in climate and the evolution of seasonal polyphenism in tropical butterflies
<p>Phenotypic plasticity in heterogeneous environments can provide tight environment-phenotype matching. However, the pre-requisite is a reliable environmental cue(s) that enables organisms to use current environmental information to induce the development of a phenotype with high fitness in a forthcoming environment. Here we quantify predictability in the timing of precipitation and temperature change to examine how this is associated with seasonal polyphenism in tropical Mycalesina butterflies. Seasonal precipitation in the tropics typically results in distinct selective environments, the wet- and dry seasons, and changes in temperature can be a major environmental cue. We sampled communities of Mycalesina butterflies from two seasonal and one aseasonal location. Quantifying environmental predictability using wavelet analysis and Colwell's indices confirmed a strong periodicity of precipitation over a 12-month period at both seasonal locations compared to the aseasonal one. However, temperature seasonality and periodicity differed between the two seasonal locations. We further show that: (1) most females from both seasonal locations synchronise their reproduction with the seasons by breeding in the wet season but arresting reproduction in the dry season. In contrast, all species breed throughout the year in the aseasonal location, and (2) species from the seasonal locations, but not those from the aseasonal location, exhibited polyphenism in wing pattern traits (eyespot size). We conclude that seasonal precipitation and its predictability are primary factors shaping the evolution of polyphenism in Mycalesina butterflies, and populations or species secondarily evolve local adaptations for cue use that depend on the local variation in the environment.</p>
Tropical niche conservatism explains the Eocene migration from India to Southeast Asia in Ochyroceratid spiders
<p><span>Biological migrations between India and Southeast (SE) Asia provide an ideal system for exploring the effects of geology and climate on species ranges. Geologists have confirmed that the direct collision between India and Eurasia occurred in the Early Eocene, but most migrations occurred between the Indian subcontinent and SE Asia rather than the former and the southern margin of Eurasia. To explain this seemingly paradoxical disconnect between the routes of plate movement and biological migration, we studied the evolutionary history of the tropical spider family Ochyroceratidae based on 101 globally distributed species. We infer a robust dated phylogeny using both transcriptomic data and a dataset of classical markers and relate these to biogeographic and climatic analyses. Our results indicate that the monophyly of Ochyroceratidae is strongly supported, and the divergence times suggest a Cretaceous Gondwanan origin of the family. Reconstructed biogeographic histories support a dispersal event from the Indian subcontinent to islands of SE Asia 55–38 million years ago. Climatic analyses and the fossil record reveal that ochyroceratids are characterized by a high degree of tropical niche conservatism, and that the ancestor of the Indian and SE Asian clades originated in very warm, wet environments. Early Eocene tropical, perhumid climates in India and SE Asia may have facilitated ochyroceratid migration, whereas the dry or seasonal climate extending from the eastern coast of China to Central Asia may have acted as a barrier, preventing dispersal. Our analyses suggest that climate plays a more important role than geology in biological migration from the Indian subcontinent to SE Asia, providing new insights into the Indian–Asian biogeographic link.</span></p>
Predation shapes invertebrate diversity in tropical but not temperate seagrass communities
<p>1. The hypothesis that biotic interactions are stronger at lower relative to higher latitudes has a rich history, drawing from ecological and evolutionary theory. While this hypothesis suggests that stronger interactions at lower latitudes may contribute to the maintenance of contemporary patterns of diversity, there remain few standardized biogeographic comparisons of community effects of species interactions. 2. Using marine seagrasses as a focal ecosystem of conservation importance and sessile marine invertebrates as model prey, we tested the hypothesis that predation is stronger at lower latitudes and can shape contemporary patterns of prey diversity. To further advance understanding beyond prior studies, we also explored mechanisms that likely underlie a change in interaction outcomes with latitude. 3. Multiple observational and experimental approaches were employed to test for effects of predators, and the mechanisms that may underlie these effects, in seagrass ecosystems of the western Atlantic Ocean spanning 30 degrees of latitude from the temperate zone to the tropics. 4. In predator exclusion experiments conducted in a temperate and a tropical region, predation decreased sessile invertebrate abundance, richness, and diversity on both natural and standardized artificial seagrass at tropical but not temperate sites. Further, predation reduced invertebrate richness at both local and regional scales in the tropics. Additional experiments demonstrated that predation reduced invertebrate recruitment in the tropics but not the temperate zone. Finally, direct observations of predators showed higher but variable consumption rates on invertebrates at subtropical and tropical relative to temperate latitudes. 5. Together, these results demonstrate that strong predation in the tropics can have consequential impacts on prey communities through discrete effects on early life stages as well as longer-term cumulative effects on community structure and diversity. Our detailed experiments also provide some of the first data linking large-scale biogeographic patterns, community-scale interaction outcomes, and direct observation of predators in the temperate zone and tropics. Therefore, our results support the hypothesis that predation is stronger in the tropics, but also elucidate some of the causes and consequences of this variation in shaping contemporary patterns of diversity. 16-Sep-2019</p>
Image 12 in The Odonata of Binyo Penyilam, a unique tropical wetland area in Bintulu Division, Sarawak, Malaysia
Image 12. Orchithemis xanthosoma female
Image 3 in The Odonata of Binyo Penyilam, a unique tropical wetland area in Bintulu Division, Sarawak, Malaysia
Image 3. The downstream Sg. Penyilam at a narrow section of the channel
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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