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1,648 results for “farm”
Integrated analysis of miRNA and mRNA expression profiles in genetically improved farmed tilapia (GIFT, Oreochromis niloticus) liver exposed to high temperature stress
GEO Series GSE94906. Oreochromis niloticus. 12 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed diets based on terrestrial alternatives to fish meal and fish oil
GEO Series GSE106604. Salmo salar. 24 samples. Type: Expression profiling by array.
Effects of Changes in Food Supply at the Time of Sex Differentiation on the Gonadal Transcriptome of Juvenile Fish. Implications for Natural and Farmed Populations
GEO Series GSE54362. Dicentrarchus labrax. 35 samples. Type: Expression profiling by array.
The grass–microbiome-rumen axis in grazing sheep farming intervened by supplementary feeding
GEO Series GSE278012. Ovis aries. 6 samples. Type: Expression profiling by high throughput sequencing.
Farm Animal Exposure, Respiratory Illnesses, and Nasal Cell Gene Expression
GEO Series GSE233761. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of the body wall of farmed sea cucumber Isostichopus badionotus specimens
GEO Series GSE157183. Isostichopus badionotus. 6 samples. Type: Expression profiling by high throughput sequencing.
Multi-scale simulation of flow through a wind farm during a frontal passage event
<p>Animation from a multi-scale simulation of flow through a wind farm showing hub-height wind speed during a frontal passage event. The simulation was performed using the Weather Research and Forecasting (WRF) model using an embedded generalized actuator disk (GAD) wind turbine model. This animation is included as supplementary material for the manuscript "Multi-scale simulation of wind farm performance during a frontal passage" published in<em> <a href="https://www.mdpi.com/2073-4433/11/3/245#">Atmosphere</a></em><a href="https://www.mdpi.com/2073-4433/11/3/245#"> 2020 11(3), 245</a>, Special Issue "Modeling of Atmospheric Boundary Layers at Turbulence-Resolving Grid Spacings." This work was prepared by LLNL under Contract DE-AC52-07NA27344.</p>
Figure 7 from: Fiorillo BF, Silva BR, Menezes FA, Marques OAV, Martins M (2020) Composition and Natural History of Snakes from Etá Farm region, Sete Barras, south-eastern Brazil. ZooKeys 931: 115-153. https://doi.org/10.3897/zookeys.931.46882
Figure 7 ABothrops jararaca (photo: Rafael Menegucci) BB. jararacussu.
Figure 1 from: Fiorillo BF, Silva BR, Menezes FA, Marques OAV, Martins M (2020) Composition and Natural History of Snakes from Etá Farm region, Sete Barras, south-eastern Brazil. ZooKeys 931: 115-153. https://doi.org/10.3897/zookeys.931.46882
Figure 1 Topographic map of the region where the Etá Farm is located.
Towed chain datasets and input files for simulations used in the manuscript "Increased mixing and turbulence in the wake of offshore wind farm foundations"
<p><strong>Contents</strong></p> <p>1. File S01_S12 Input files for simulations (precursor runs and main runs)</p> <p>2. File S13 Topography file for simulations with monopile</p> <p>2. Data sets ds01 to ds06 (towed chain data collected in May 25, 2015)</p> <p>3. Data sets ds07 to ds14 (towed chain data collected in July 19, 2017)</p> <p>4. Data sets d15 to ds16 (ADCP data collected in May 25, 2015 and July 19, 2017)</p> <p><strong>Introduction </strong></p> <p>This package contains the input parameters used in each of the precursor (S01 - S04) and main runs (S05 - S12) presented in the manuscript “Increased mixing and turbulence in the wake of offshore wind farm foundations”. These input files are found in the PDF file "S01_S12".</p> <p>The main runs, in which the wake of a monopile was simulated (S05, S07, S09, S11), require a topography file, which is a NETCDF-file that has been uploaded separately (S13). All simulations were run using the Parallelized Large-Eddy Simulation Model for atmospheric and oceanic flows (PALM, version 4.0, revision 2504).</p> <p>Further, this package contains the data sets collected using the towed chain in 2015 (ds01-ds06, ds15) and 2017 (ds07-ds14, ds16), which have been uploaded as separate NETCDF-files.</p>
The Effect of Vaccination with Live Attenuated Neethling Lumpy Skin Disease Vaccine on Milk Production and Mortality—an Analysis of 77 Dairy Farms in Israel
<p>This is the R script, full data and data for figures 3 and 4 of the article "The Effect of Vaccination with Live Attenuated Neethling Lumpy Skin Disease Vaccine on Milk Production and Mortality—an Analysis of 77 Dairy Farms in Israel"</p>
Comparative genomics reveals sanitary and catabolic capabilities of Actinobacteria within the fungus-farming termite symbiosis
<p>Fasta assembly and annotated genbank files of 4 putative novel Actinobacteria isolated from the fungus farming termite <em>Macrotermes natalensis:</em></p> <p> </p> <p><strong>Sample - Genus - Isolation location on termite</strong><br> RB22 - Luteimicrobium - major worker gut</p> <p>RB24 - Mycolicibacterium - major worker gut</p> <p>RB33 - Mycolicibacterium - major worker gut</p> <p>M32 - Streptomyces - cuticle</p> <p> </p> <p> </p>
Data from: Who is spreading avian influenza in the moving duck flock farming network of Indonesia?
Duck populations are considered to be a reservoir of Highly pathogenic avian influenza (HPAI) virus H5N1 in some agricultural production systems, as they are able to shed the virus for several days without clinical signs. Countries endemically affected with HPAI in Asia are characterised by production systems where ducks are fed on post-harvest spilled rice. During this scavenging process it is common for ducks to come into contact with other duck flocks or wild birds, thereby providing opportunities for virus spread. Effective risk management for HPAI has been significantly compromised by a limited understanding of management of moving duck flocks in these countries, despite of a small number of recent investigations. Here, for the first time, we described the management of moving duck flocks and the structure of the moving duck flock network in quantitative terms so that factors influencing the risk of HPAIV transmission can be identified. By following moving duck flock farmers over a period of 6 months in Java, Indonesia, we were able to describe the movement of flocks and to characterise the network of various types of actors associated with the production system. We used these data to estimate the basic reproductive number for HPAI virus spread. Our results suggest that focussing HPAI prevention measures on duck flocks alone will not be sufficient. Instead, the role of transporters of moving duck flocks, hatcheries and rice paddy owners, in the spread of the HPAI virus needs to be recognised.
Data from: Quantifying heritable variation in fitness-related traits of wild, farmed and hybrid Atlantic salmon families in a wild river environment
Farmed fish are typically genetically different from wild conspecifics. Escapees from fish farms may contribute one-way gene flow from farm to wild gene pools, which can depress population productivity, dilute local adaptations and disrupt coadapted gene complexes. Here, we reanalyse data from two experiments (McGinnity et al., 1997, 2003) where performance of Atlantic salmon (Salmo salar) progeny originating from experimental crosses between farm and wild parents (in three different cohorts) were measured in a natural stream under common garden conditions. Previous published analyses focussed on group-level differences but did not account for pedigree structure, as we do here using modern mixed-effect models. Offspring with one or two farm parents exhibited poorer survival in their first and second year of life compared with those with two wild parents and these group-level inferences were robust to excluding outlier families. Variation in performance among farm, hybrid and wild families was generally similar in magnitude. Farm offspring were generally larger at all life stages examined than wild offspring, but the differences were moderate (5–20%) and similar in magnitude in the wild versus hatchery environments. Quantitative genetic analyses conducted using a Bayesian framework revealed moderate heritability in juvenile fork length and mass and positive genetic correlations (>0.85) between these morphological traits. Our study confirms (using more rigorous statistical techniques) previous studies showing that offspring of wild fish invariably have higher fitness and contributes fresh insights into family-level variation in performance of farm, wild and hybrid Atlantic salmon families in the wild. It also adds to a small, but growing, number of studies that estimate key evolutionary parameters in wild salmonid populations. Such information is vital in modelling the impacts of introgression by escaped farm salmon.
Data from: Diversity and linkage disequilibrium in farmed Tasmanian Atlantic salmon
Farmed Atlantic salmon (Salmo salar) is a globally important production species, including in Australia where breeding and selection has been in progress since the 1960s. The recent development of SNP genotyping platforms means genome-wide association and genomic prediction can now be implemented to speed genetic gain. As a precursor, this study collected genotypes at 218 132 SNPs in 777 fish from a Tasmanian breeding population to assess levels of genetic diversity, the strength of linkage disequilibrium (LD) and imputation accuracy. Genetic diversity in Tasmanian Atlantic salmon was lower than observed within European populations when compared using four diversity metrics. The distribution of allele frequencies also showed a clear difference, with the Tasmanian animals carrying an excess of low minor allele frequency variants. The strength of observed LD was high at short distances (<25 kb) and remained above background for marker pairs separated by large chromosomal distances (hundreds of kb), in sharp contrast to the European Atlantic salmon tested. Genotypes were used to evaluate the accuracy of imputation from low density (0.5 to 5 K) up to increased density SNP sets (78 K). This revealed high imputation accuracies (0.89–0.97), suggesting that the use of low density SNP sets will be a successful approach for genomic prediction in this population. The long-range LD, comparatively low genetic diversity and high imputation accuracy in Tasmanian salmon is consistent with known aspects of their population history, which involved a small founding population and an absence of subsequent introgression. The findings of this study represent an important first step towards the design of methods to apply genomics in this economically important population.
Database of field experiments on the effect of organic farming on yield and yield stability in European arable land
<table> <tbody> <tr> <td>The database consists of 50 field experiments located in 45 sites with mostly loamy soil texture across 15 European countries, covering European climate zones, from Boreal to Mediterranean South. Mean annual precipitation and mean annual temperature measured at the experimental sites included in this meta-analysis ranged from 360 mm to 1,050 mm and from 3.4 °C to 16.3 °C, respectively.<br>A total of 7 studies each from Sweden and Poland were included, 6 from Italy and Spain, 4 from Denmark and Estonia, 3 from Germany, 2 from Finland, Latvia, Norway, Switzerland and the UK, and 1 from Austria, the Netherlands and France. In organic systems, animal-based fertilizers (manure, slurry, manure compost) was applied in 11 studies, plant-based fertilizers (legumes and mixed green manure) in 24 studies, and both types of organic fertilizers in 13 studies. N input in organic systems was less than in conventional systems in 24 studies, equal in 3 studies, higher in 4 studies, and not reported in 19 studies. In most studies, fields were conventionally tilled and not irrigated. The duration of cereal-based organic systems ranges from 3 to 35 years. Yields of winter wheat, winter rye, spring barley, spring wheat, or oats were measured from 3 to 30 years, and the duration of organic rotations varied from two to eight years.<span> </span></td> </tr> </tbody> </table>
Fig. 3 in Effect Of Farming And Rainfall On The Species Diversity, Population Density And Community Structure Of Birds Breeding In The Kalahari Woodland, Ne Namibia
Fig. 3. Percentage of main feeding guilds in 2014 and 2015.
Farm Out Building - Medium Res
Interesting to see the effects of multiple building textures. 30m height @ 10 KPH @ 1 image every 3 secs Source: Objaverse 1.0 / Sketchfab
Figure 47 from: Ješovnik A, Schultz TR (2017) Revision of the fungus-farming ant genus Sericomyrmex Mayr (Hymenoptera, Formicidae, Myrmicinae). ZooKeys 670: 1-109. https://doi.org/10.3897/zookeys.670.11839
Figure 47 - Distribution map of S. opacus and S. parvulus.
Figure 41 from: Ješovnik A, Schultz TR (2017) Revision of the fungus-farming ant genus Sericomyrmex Mayr (Hymenoptera, Formicidae, Myrmicinae). ZooKeys 670: 1-109. https://doi.org/10.3897/zookeys.670.11839
Figure 41 - Distribution map of S. mayri.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.