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3,121 results for “Resources”
Dataset from 'Hesse, C., Koroknai, L., & Billino, J. (2018). Individual differences in processing resources modulate bimanual interference in pointing. Psychological Research. doi: 10.1007/s00426-018-1050-3
<p>--------------------------------------------------------------</p> <p>The folder contains 8 data files and 1 readme file describing the content of the data files.</p> <p>-------------------------------------------------------------</p> <p>For further questions, please contact:<br> c.hesse[at]abdn.ac.uk</p> <p> </p>
Resourcing long-term care: A social investment approach
<p>This video explores decision-making for investments in long-term care.</p>
Resources for genomic analyses in baboons (genus Papio)
<p>Resources for genomic analyses in baboons (genus <em>Papio</em>). See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.</p> <p><strong>Panu_2.0_Panu_3.0_chain_files.tar.gz</strong> Chain files for converting coordinates between Panu_2.0 and Panu_3.0. All coordinates in the files below correspond to Panu_2.0, but can be converted to coordinates in the new assembly, Panu_3.0, using the chain files with liftOver (Hinrichs et al. 2006, DOI:10.1093/nar/gkj144).</p> <p><strong>baboon_100_highcoverage_SNPRC_sample_info.txt</strong> Sample information: Sample ID, Sequencing ID, Type, Sex, Fped (%), Admixed, Mean coverage (X). The type, sex, inbreeding coefficient (Fped), and admixture status are all based on the SNPRC pedigree.</p> <p><strong>baboon_24_olive_founders_phased.vcf.gz</strong> Phased VCF files for 24 olive baboon founders. Phasing was performed with Beagle (Browning and Browning 2007, DOI:10.1086/521987), assuming an effective population size of 40,000 individuals (Boissinot et al. 2014, DOI:10.1002/ajpa.22618). SNPs were filtered to remove singletons and thinned so that no two sites were closer than 10 bp. <strong>baboon_24_olive_founders_phased.vcf.gz.tbi</strong> is the index for the VCF file.</p> <p><br> <strong>baboon_ldhelmet_recombination_maps.tar.gz</strong> Fine-scale recombination maps produced with LDhelmet (Chan et al. 2012, DOI:10.1371/journal.pgen.1003090) based on phased genotypes from 24 olive baboon founders. Results from three block penalties are provided (5, 25, 50).</p> <p><strong>baboon_AIMs_33founders_fixed_yellow_olive.txt</strong> List of ancestry informative markers for distinguishing olive and yellow baboon ancestry. These sites represent fixed differences between 7 genetically yellow and 24 genetically olive baboons.</p> <p><strong>baboon_plink_ROH.bed</strong> Coordinates of runs of homozygosity in BED format, inferred with PLINK (Chang et al. 2015, DOI:10.1186/s13742-015-0047-8) using the default behavior of the --homozyg function. The following parameters were used to prune SNPs beforehand: --indep-pairwise 50 5 0.5. The columns are: chromosome, start position, end position, sample name.</p> <p><strong>baboon_LOF_mutations.txt</strong> List of putative LOF mutations annotated with SnpEff (Cingolani et al. 2012, DOI:10.4161/fly.19695). The following mutation types were included: “stop_gained”, “start_lost”, “stop_lost”, “splice_acceptor_variant”, “splice_donor_variant”.</p>
Survival under conditions of variable food availability: Resource utilization and storage in the cold‐water coral Lophelia pertusa
<p>Abstract</p> <p>Cold-water coral (CWC) reefs are hotspots of biodiversity and productivity in the deep sea, but their distribution is limited by the availability of food, which undergoes complex local and temporal variability. We studied the resource utilization, metabolism, and tissue storage of CWC Lophelia pertusa during an experimentally simulated 3-day food pulse, of 13C15N-enriched phytodetritus, followed by a 4-week food deprivation. Oxygen consumption (0.145 μmol O2 [mmol organic carbon {OC}]−1 h−1), release of particulate organic matter (0.029 μmol particulate organic carbon [POC] [mmol OC]−1 h−1 and 0.005 μmol particulate organic nitrogen [mmol OC]−1 h−1), ammonium excretion (0.004 μmol NH4 + [mmol OC]−1 h−1), tissue C and N content, and fatty acid (FA) and amino acid composition did not change significantly during the experiment. Metabolization of the labeled phytodetritus, however, underwent distinct temporal dynamics. Initially, L. pertusa preferentially used phytodetritus-derived C for respiration (2.2 0.36 nmol C [mmol OC]−1 h−1) and mucus production (0.94 0.52 nmol C [mmol OC]−1 h−1), but those tracer fluxes declined exponentially to <20% within 2 weeks after feeding and then remained stable, indicating that the remainder of the incorporated phytodetritus had entered a tissue pool with lower turnover. Analysis of 13C in individual FAs revealed a mismatch between the FAs incorporated from phytodetritus and the FA requirements of the coral.We suggest that feeding on other resources, such as lipid-rich zooplankton, could fill this deficiency. A release of 10% of their total OC as respired C and POC during the 4-week food deprivation underlines the importance of regular food pulses for CWC reefs. </p>
Data sets for the Publication 'Analytical solution of gas flow in rough-walled micro-fracture at in-situ state' in Water Resources Research.
<p>Data sets for the Publication 'Analytical solution of gas flow in rough-walled micro-fracture at in-situ state' in Water Resources Research.</p>
Benchmark and integration of resources for the estimation of human transcription factor activities
<p>Data used to benchmark human TF-target datasets via TF activities in 3 benchmark datasets. Described in <a href="https://www.biorxiv.org/content/biorxiv/early/2018/06/18/337915.full.pdf">Garcia-Alonso et al 2019</a></p> <p>Check <a href="https://github.com/saezlab/TFbenchmark">https://github.com/saezlab/TFbenchmark</a> to access the corresponding code.</p> <p> </p> <p> </p> <p><strong>Study abstract</strong></p> <p>Prediction of transcription factor (TF) activities from the gene expression of their targets (i.e. TF regulon) is becoming a widely-used approach to characterize the functional status of transcriptional regulatory circuits. Several strategies and datasets have been proposed to link the target genes likely regulated by a TF, each one providing a different level of evidence. The most established ones are: (i) manually curated repositories, (ii) interactions derived from ChIP-seq binding data, (iii) <em>in silico</em> prediction of TF binding on gene promoters, and (iv) reverse-engineered regulons from large gene expression datasets. However, it is not known how these different sources of regulons affect the TF activity estimations, and thereby downstream analysis and interpretation. Here we compared the accuracy and biases of these strategies to define human TF regulons by means of their ability to predict changes in TF activities in three reference benchmark datasets. We assembled a collection of TF-target interactions among 1,541 TFs and evaluated how the different molecular and regulatory properties of the TFs, such as the DNA-binding domain, specificities or mode of interaction with the chromatin, affect the predictions of TF activity changes. We assessed their coverage and found little overlap on the regulons derived from each strategy and better performance by literature-curated information followed by ChIP-seq data. We provide an integrated resource of all TF-target interactions derived through these strategies with a confidence score, as a resource for enhanced prediction of TF activities.</p>
The viral load monitoring cascade in a resource-limited setting: a prospective multicentre cohort study after introduction of routine viral load monitoring in rural Lesotho
<p>Anonymised dataset for the submitted manuscript "The viral load monitoring cascade in a resource-limited setting: a prospective multicentre cohort study after introduction of routine viral load monitoring in rural Lesotho"</p>
Data for paper "Low Resource Technique for Measurement of H+ and O+ in the Terrestrial Magnetosphere"
<p>Data set for paper "Low Resource Technique for Measurement of H+ and O+ in the Terrestrial Magnetosphere" to be published in Journal of Geophysical Research: Space Physics (Technical Methods). Data set is a single Microsoft Excel file containing Data Set S1, Data Set S2, Data Set S3.</p>
FIGURE 7 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 7. Distributions of sizes of Tropidurus psammonastes, Eurolophosaurus divaricatus, Briba brasiliana and Cnemidophorus spec. nov. based on mass in four field campaigns conducted in the dunes of Ibiraba, State of Bahia, Brazil.
FIGURE 11 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 11. Frequency-based comparison among relative food item availability (gray bars) in the Ibiraba dunes, State of Bahia, Brazil, and relative food consumption by the seven most abundant dune-dwelling lizard species (black bars). Black arrows show food categories for which lizards showed electivity (positive or negative) following criteria defined in the text. Food categories: 1 = Formicidae; 2 = Araneae; 3 = Coleoptera; 4 = Insect larvae; 5 = Diplopoda; 6 = Thysanura; 7 = Flowers; 8 = Plant tissues (except flowers); 9 = Arthropod eggs; 10 = Ensifera; 11 = Hymenoptera (except Formicidae); 12 = Solifugae; 13 = Acari; 14 = Scropiones; 15 = Isoptera; 16 = Chilopoda; 17 = Homoptera; 18 = Phasmida; 19 = Blattaria; 20 = Mantodea; 21 = Diptera; 22 = Hemiptera; 23 = Lepidoptera; 24 = Gastropoda; 25 = Opiliones; 26 = Pseudoscorpiones; 27 = Caelifera; 28 = Collembola; 29 = Neuroptera; 30 = Embioptera.
FIGURE 1 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 1. Climate diagram for the municipality of Barra, State of Bahia (from Nimer, 1979), generated by the meteorological station closest to the study area (Ibiraba).
FIGURE 3 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 3. Left: schematic profile of the dunes showing microgeographic positions: summit, slope, plateau, and valley. Right: an example of a drawing used to quantify six quantitative microhabitat variables: area covered by ground litter, shrubs, subshrubs, the terrestrial bromeliad Bromelia antiacantha, the small cactus Tacinga inamoena, and area of horizontal projection of trees.
FIGURE 13 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 13. Comparison of food use among the seven most abundant lizard species in the Ibiraba dunes, State of Bahia, Brazil. The width of lines connecting each pair of species is proportional to the value of the symmetrical coefficient of the niche overlap (f). Gray areas circumscribe homogenous groups of species based on the mass of the heaviest item ingested.
FIGURE 2 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 2. Map showing the geographic location of the study area. The inset shows the easternmost part of Brazil and four important cities as reference points: 1.) Belém, State of Pará; 2.) Salvador, State of Bahia; 3.) Rio de Janeiro, State of Rio de Janeiro; 4.) Brasília, Distrito Federal (Federal District). The darker, diagonal area surrounded by lighter areas represents the shrublands and dry forests of the Caatingas, bordered on the west and east by forest and degraded forest and on the south by the Cerrado grasslands. The area delimited by the smallest darker rectangle is magnified to show the dune fields on the west bank of the São Francisco River (S.F.R.) The dune field is bordered on the west by the Serra do Estreito (S.E.). Its northern limit is represented by the small triangles. The Icatu River (I.R., the only perennial river crossing the dunes), the Grande River (G.R.), and the Lagoa de Itaparica (L.I.), as well as the urban centers of the municipalities of Barra (BAR.) and Xique-Xique (X.X.) are shown for geographic reference. The fieldwork was performed in the dunes with sharp morphology (lighter strip along the SFR; black arrow) near the village of Ibiraba (IB.). The coordinates of the central point in this image are 10°30'S-42°45'W.
FIGURE 16 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 16. Synthesis of available information (Moraes, 1993; present study) on the diet of gymnophthalmids present in the sandy areas along the middle course of São Francisco River, mapped into the phylogeny presented by Pellegrino et al., (2001). Numbers 1 to 6 across the top represent the locations studied (1 = Queimadas; 2 = Vacaria; 3 = Ibiraba; 4 = Alagoado; 5 = Santo Inácio; 6 = Lagoa de Itaparica; see map in Fig. 2). Black squares represent important items in the diet of each population studied, based on recurrence frequency. Numbers below squares represent the number of stomachs analyzed.
FIGURE 15 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 15. Synthesis of the differences in diet (food items and sizes) and phase of activity among the five lizard species extensively using protected microhabitat areas (lower pentagram) and among the four lizard species extensively using exposed microhabitat areas (or avoiding protected areas) (upper square). Black straight lines crossed by gray curved lines show differences in food consumption and phase of activity (indicated in gray letters) between pairs of species.
FIGURE 12 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 12. Relative contributions of very small, small, and medium-sized larvae to the total mass of larvae ingested by Cnemidophorus spec. nov. (CNE- black bars), Briba brasiliana (BRIgray bars) and Calyptommatus leiolepis (CAL- striped bars), the three lizard species endemic to the Ibiraba dunes, State of Bahia, Brazil for which larvae are the most important item in their diets.
FIGURE 10 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 10. Frequency of food items available in the dunes of Ibiraba, State of Bahia, Brazil, estimated by captures in pitfall traps (black bars) and by total consumption by the lizard assemblage (gray bars). Black arrows indicate food categories of low consumption by the assemblage and gray arrows show food categories better estimated by lizard consumption. Food categories: 1 = Formicidae; 2 = Araneae; 3 = Coleoptera; 4 = Diplopoda; 5 = Thysanura; 6 = Ensifera; 7 = Hymenoptera (except Formicidae); 8 = Solifugae; 9 = Acari; 10 = Scorpiones; 11 = Chilopoda; 12 = Phasmida; 13 = Blattaria; 14 = Mantodea; 15 = Diptera; 16 = Hemiptera; 17 = Homoptera; 18 = Insect larvae and pupae; 20 = Pseudoscorpiones; 21 = Lepidoptera; 22 = Caelifera; 23 = Collembola; 24 = Neuroptera; 25 = Embioptera; 26 = Isoptera; 27 = Arthropod eggs; 28 = Flowers; 29 = Gastropoda; 30 = Plant matter (except flowers).
FIGURE 5 in Electivities And Resource Use By An Assemblage Of Lizards Endemic To The Dunes Of The São Francisco River, Northeastern Brazil P L.B. R M T. R Abstract
FIGURE 5. Scatterplots of body mass versus snout-vent length (A) and head width versus jaw length (B) based on data from seven lizard species endemic to the dunes of Ibiraba, State of Bahia, Brazil.
FIG. 4 in State of the Amphibia 2020: A Review of Five Years of Amphibian Research and Existing Resources
FIG. 4. Additions of amphibian species over time. (A) Geographic heat map and point cluster of new species described between 2016 and 2020. The countries with the highest numbers of new species in this time period are China (100 species), Brazil (95 species), Ecuador (67 species), Madagascar (56 species), and Peru (56 species). Inset graphs indicate the cumulative number of new species described by region between 2007 and 2020; years 2016–2020 are highlighted with the blue rectangle; y-axis scale indicated for Latin America is the same for all insets. Total cumulative number of (B) species and (C) genera in AmphibiaWeb taxonomy database, split by order. (D) Cumulative numbers of formal and unspecified (informal) species names in the GenBank Taxonomy database. Examples of unspecified names are ''Hyla cf areniCOlOr'' or ''Hyla sp. B.'' See supplemental data files for data used to generate this figure (see Data Accessibility).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.