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7,370 results for “supplementation”
Datasets supplementing journal article "Scalable Bottom-up Synthesis of Co-Ni-Doped Graphene"
<p>Datasets supporting the journal article "Scalable Bottom-up Synthesis of Co-Ni-Doped Graphene".</p>
The supplemental material to "Mean cold pool size of quasi-equilibrium convection" Part1 and Part 2
<p>The supplemental material to this two-paper series includes a hand-written mathematical derivation note (math_note.pdf), supplemental figures shared by the two parts (supplemental_figures_Parts_I_and_II.pdf), the postprocessing codes (postprocessing codes.zip), the LES namelist file for Bryan Cloud Model 1 (namelist.input), and some LES movies. The movie list is shown below:</p> <p>The movie "<a href="../api/records/10822712/draft/files/potential_temperature_near_surface.avi/content" target="_blank" rel="noopener noreferrer">potential_temperature_near_surface.avi</a>" shows the z=12.5 m potential temperature (unit: K) between t=3 days and t=5 days. Experiments Ev=0.2, 0.5, 1.0, and 2.0 are shown. </p> <p>The movie "<a href="../api/records/10822712/draft/files/w_4km.avi/content" target="_blank" rel="noopener noreferrer">w_4km.avi</a>" shows the z~4 km vertical velocity (unit: m/s) between t=3 days and t=5 days. Experiments Ev=0.2, 0.5, 1.0, and 2.0 are shown. </p> <p>The movie "<a href="../api/records/10822712/draft/files/vapor_0-551m_average.avi/content" target="_blank" rel="noopener noreferrer">vapor_0-551m_average.avi</a>" shows the z=0-551 m vertically averaged water vapor mixing ratio (unit: g/kg) between t=3 days and t=5 days. Experiments Ev=0.2, 0.5, 1.0, and 2.0 are shown. </p> <p>The movie "<a href="https://zenodo.org/api/records/13785498/draft/files/early_vapor_0-551m_average.avi/content" target="_blank" rel="noopener noreferrer">early_vapor_0-551m_average.avi</a>" is the same as "<a href="../api/records/10822712/draft/files/vapor_0-551m_average.avi/content" target="_blank" rel="noopener noreferrer">vapor_0-551m_average.avi</a>", but for the water vapor mixing ratio between t=0 day and t=3 days. It aims to show the initial spin-up stage of the simulation, which some readers might be interested in. </p> <p>The movie "<a href="https://zenodo.org/api/records/13785498/draft/files/large_domain_vapr_551m_average.mp4/content" target="_blank" rel="noopener noreferrer">large_domain_vapr_551m_average.mp4</a>" shows the z=0-551 m vertically averaged vapor mixing ratio (unit: g/kg) between t=3 days and t=5 days, using a large domain size of 144 km x 144 km (not 96 km x 96 km as for other cases) for the Ev=1.0 and 2.0 cases. Only the domain's southwest 96 km x 96 km corner is shown. </p> <p>The LES data, as well as intermediate output files for plotting (some .mat files), are available by contacting the first author Hao Fu via: haofu@uchicago.edu / haofu736@gmail.com </p> <p>Please let us know if you have any questions!</p>
Supplemental Online Material for "Comparing the Effects of Euclidean Distance Matching and Dynamic Time Warping in the Clustering of COVID-19 Evolution": Interactive Figures
<p>This repository contains the interactive figures accompanying the manuscript "<em>Comparing the Effects of Euclidean Distance Matching and Dynamic Time Warping in the Clustering of COVID-19 Evolution</em>". These interactive visualizations provide a dynamic exploration of some of the data and results discussed in the paper. The following interactive figures are included:</p> <ul> <li><code>Figure-1.html</code>: Interactive version of Figure 1 from the paper, showing a time series heatmap of the 14-day simple moving average of reported COVID-19 cases for each of Europe's 298 NUTS 2 regions, from 02/10/2020 - 07/12/2020.</li> <li><code>Figure-2.html</code>: Interactive version of Figure 2, which visualizes two heatmap dendrograms showcasing the pairwise distance matrices and hierarchical clustering results for (a) the Euclidean distance and (b) the Dynamic Time Warping distance.</li> <li><code>cluster_maps.html</code>: Interactive cluster maps, allowing for detailed exploration of the clusters discussed in the paper. Users can select between different distance metrics (Euclidean or Dynamic Time Warping) and adjust the number of clusters to visualize, providing greater flexibility in exploring the clustering patterns. This figure is not included as a static figure in the paper but is provided merely as supplemental online material.</li> </ul> <p>These interactive figures are best viewed using a modern web browser (e.g., Chrome, Firefox ...). For all visualizations, upon hovering over the figure, a label appears displaying the NUTS 2 region and the country it is in, providing additional geographic context.</p>
Supplemental tables for bioRxiv submission
<p>Supplemental tables for the bioRxiv manuscript titled "Reduction of SynGAP-γ, disrupted splicing of Agap3, and oligodendrocyte deficits in Srrm2 mice, a genetic model of schizophrenia and neurodevelopmental disorder"</p>
Prospective in-silico trials identify combined SK and K2P channel block as an effective strategy for atrial fibrillation cardioversion - Supplement
<p>The dataset contains a Supplemental Material for the paper "<strong>Prospective in-silico trials identify combined SK and K2P channel block as an effective strategy for atrial fibrillation cardioversion</strong>", <em>DOI:</em> <span>10.1113/JP287124</span></p> <p>Moreover, it includes 10 simulations conducted in a representative cohort of 10 non-cardioverted virtual patients that originally presented sustained AF for 5 seconds after drug simulation. The new simulations were run for 5 additional seconds, for a total duration of 10 seconds of simulated pharmacological action. The two drug treatments resulting in lower cardioversion efficacy (i.e., single SK and K2P channel block) were considered. </p>
Conceptual Replication supplement list
Open the record for dataset details and reuse information.
Dataset_Supplement_Suitner_et_al_2024
<p>Carbonate chemistry raw data for: </p> <p>Ocean alkalinity enhancement approaches and the predictability of runaway precipitation processes – results of an experimental study to determine critical alkalinity ranges for safe and sustainable application scenarios</p> <p>by: Suitner et al., 2024</p>
Supplemental Tables for "The Impact of hypothyroidism on cardiovascular-related healthcare utilization in the US population with diabetes
<p>Supplemental tables for publication in the Journal of the Endocrine Society</p>
Supplemental Data: Rapid Automated Mapping of Clouds on Titan with Instance Segmentation
<p>Supplemental data provided in conjuction with paper submitted to AGU JGR: Machine Learning and Computation.</p>
Supplemental Data for Comprehensive Microbiome Landscape (Bladder, Intestinal, Vaginal) in Bladder Cancer: A Systematic Review
<p>Supplemental Data for: "<em>Comprehensive Microbiome Landscape (Bladder, Intestinal, Vaginal) in Bladder Cancer: A Systematic Review"</em></p>
Long-term adaptation of lymphoma cell lines to hypoxia is mediated by diverse molecular mechanisms that are targetable with specific inhibitors - Supplemental Data Tables
<p><strong>Supplemental Data Table - Metabolome.xlsx</strong> - a complete list of measured metabolites for Ramos and HBL2 cell lines. Peak area values for normoxic and hypoxia-adapted cells in triplicates. Mean log 2 fold change and adjusted P values are provided for all metabolites except those under the limits of detection.</p> <p><strong>Supplemental Data Table - Transcriptome Differential Expression.xlsx</strong> - the tables of all transcripts detected in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls. Fold change and log 2 fold change, log 2 CPM, F statistic, P value and False Discovery Rate (FDR) were calculated using EdgeR package. Last column shows if a transcript was significantly <em>up</em>- or <em>down</em>regulated or not (<em>ns</em>).</p> <p><strong>Supplemental Data Table - Transcriptome Gene Set Analysis.xlsx</strong> - the tables of the gene set enrichment analysis of Reactome pathways in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.</p> <p><strong>Supplemental Data Table - Proteome Differential Expression.xlsx</strong> - the tables of proteins detected and differentially expressed in hypoxia-adapted HBL2 and Ramos lymphoma cell lines compared to normoxic controls.</p> <p><strong>Supplemental Data Table - Cell lines SNV characterization.xlsx</strong> - the tables of mutations (single nucleotide variations and short indels) detected in four tested lymphpoma cell lines and corresponding primary tumor (PT) samples. AF_CTRL - allelic frequency (0..1) in healthy control DNA from the patient, AF_PT - allelic frequency in primary tumor, AF_PDCL - allelic frequency in patient-derived cell line. DP - total sequence depth, TLOD - Log odds that the variant is present in the tumor sample relative to the expected noise. Gencode and HGNC annotation columns are output of the Funcotator analysis. SNVs were detected using Mutect2 as a part of GATK 4.6.0.0 somatic variat calling pipeline.</p>
Supplements for Inferring Long-Term Tectonic Uplift Patterns from Bayesian Inversion of Fluvially-Incised Landscapes paper
<p><strong>Data and File Organization:</strong></p> <ol> <li><strong>Natural Landscapes (DEM):</strong> <ul> <li>Look for <code>.tif</code> files containing DEMs of natural landscapes. These files are in latitude-longitude coordinates; convert them to UTM if needed.</li> </ul> </li> <li><strong>Synthetic Landscapes (DEM):</strong> <ul> <li>DEM files for synthetic landscapes, ready for use in inversion schemes, are labeled with a <code>syn_</code> prefix.</li> </ul> </li> <li><strong>Climatic Data:</strong> <ul> <li>Climatic data for the Himalayas is available in <code>climate_data_him.zip</code>.</li> </ul> </li> </ol> <p><strong>Running the Code:</strong></p> <ol> <li> <p><strong>Loading DEMs:</strong></p> <ul> <li>Use the <code>loadDEM</code> package to load your DEM file.</li> <li>Specify <code>Z0</code> and <code>A0</code> values, then plot the landscape and <code>basinID</code> for reference.</li> </ul> </li> <li> <p><strong>Identifying Basins of Interest:</strong></p> <ul> <li>Determine which <code>basinID</code>s are of interest, then save them as forward objects. The functions for this process are available within the relevant packages.</li> </ul> </li> <li> <p><strong>Loading the Forward Model:</strong></p> <ul> <li>Load the forward model from the saved file using the appropriate function in the <code>frd</code> package.</li> <li>Choose the number of knots and specify if you prefer a 1D or 2D inversion.</li> </ul> </li> <li> <p><strong>Running and Plotting Inversion Results:</strong></p> <ul> <li>After running the inversion, view results in <code>inversion.step</code>.</li> <li>Plot these results using the plotting functions in the <code>frdplotting</code> package.</li> </ul> </li> </ol> <p> </p> <p> </p> <p><strong>Setup and Installation:</strong></p> <ul> <li>Install the package <code>scabbard</code> with: <div> <div> </div> <div><code>pip install pyscabbard </code></div> </div> </li> <li>All other Python dependencies are standard and can be installed via <code>pip</code> or <code>conda</code> as needed.</li> </ul>
Best practices for evaluating IRFL approaches - Supplemental material
<p>Information retrieval fault localization (IRFL) is a popular research field and many IRFL approaches have been proposed recently.<br>Unfortunately, the evaluation of some of these IRFL approaches is often too simplistic, which can cause an overestimation of performance of these approaches.<br>For this reason, we discuss evaluation pitfalls and problems in our paper "<a href="https://doi.org/10.1016/j.jss.2025.112342"><em>Best practices for evaluating IRFL approaches</em></a>".<br>To support our claim of the poor status quo of current evaluation practices in some research papers, we have performed a literature survey on 135 papers.<br>This repository contains the data that we have extracted from these papers and our evaluation script.</p>
TF KO-ALE Supplemental Data
Open the record for dataset details and reuse information.
Supplemental Materials: Duration of poverty and subsequent cognitive function and decline among older adults in China, 2005-2018
<p><b>Objective</b></p> <p>To investigate the relationship between late-life duration of poverty exposure and cognitive function and decline among older adults in China.</p> <p><b>Methods</b></p> <p>Data were from 3,209 participants aged ≥64 in the Chinese Longitudinal Healthy Longevity Survey (CLHLS). Duration of poverty, defined according to urban and rural regional standards from the China Statistical Yearbook, was assessed from 2005-2011 (never in poverty; 1/3 of the period in poverty; ≥2/3 of the period in poverty). Cognitive function was measured by the Chinese Mini Mental State Exam (CMMSE) from 2011 to 2018. We used attrition-weighted, multivariable <span>mixed-effects Tobit regression to examine the association of duration of poverty with cognitive performance and rate of decline. </span></p> <p><b>Results</b></p> <p>A total of 1,162 individuals (36.21%) were never in poverty over the period from 2005 to 2011, 1,172 (36.52%) were in poverty 1/3 of the period, and 875 (27.27%) were in poverty ≥2/3 of the period. A longer poverty duration was associated with lower subsequent CMMSE scores with a dose-response relationship (1/3 vs. never in poverty: β = -0.98; 95% CI: -1.61 to -0.35; ≥2/3 vs. never in poverty: β = -1.55; 95% CI: -2.29 to -0.81). However, a longer duration of poverty was associated with a slower rate of CMMSE score decline over time.</p> <p><b>Conclusion</b></p> <p>These findings provide valuable evidence on the role of cumulative late-life poverty in relation to cognitive health among older adults in a rapidly urbanizing and aging middle-income country. Our findings may support a <i>compensation </i>hypothesis for cognitive reserve in this setting.</p>
Data from: Methods for estimating causal relationships of adverse events with dietary supplements
Objective: Dietary supplement use has increased over past decades, resulting in reports of potentially serious adverse events. The aim of this study was to develop optimised methods to evaluate the causal relationships between adverse events and dietary supplements, and to test these methods using case reports. Design: Causal relationship assessment using prospectively collected data. Setting and participants: 4 dietary supplement experts, 4 pharmacists and 11 registered dietitians (5 men and 14 women) examined 200 case reports of suspected adverse events using the modified Naranjo scale and the modified Food and Drug Administration (FDA) algorithm. Primary outcome measures: The distribution of evaluation results was analysed and inter-rater reliability was evaluated for the two modified methods employed using intraclass correlation coefficients (ICC) and Fleiss' κ. Results: Using these two methods, most of the 200 case reports were categorised as 'lack of information' or 'possible' adverse events. Inter-rater reliability among entire assessors ratings for the two modified methods, based on ICC and Fleiss' κ, were classified as more than substantial (modified Naranjo scale: ICC (95% CI) 0.873 (0.850 to 0.895); Fleiss' κ (95% CI) 0.615 (0.615 to 0.615). Modified FDA algorithm: Fleiss' κ (95% CI) 0.622 (0.622 to 0.622). Conclusions: These methods may help to assess the causal relationships between adverse events and dietary supplements. By conducting additional studies of these methods in different populations, researchers can expand the possibilities for the application of our methods.
Data from: Effectiveness of complementary food supplement and dietary counseling on anemia and stunting in children aged 6-23 months in poor areas in Qinghai Province, China: a controlled interventional study
Objective: To assess the effectiveness of dietary counseling and complementary food supplements on anemia and stunting prevalence in children aged 6-23 months. Design: A controlled intervention study with measurements of height and hemoglobin levels, and cross-sectional surveys in August 2012 (baseline) and 2013 and 2014 (end-line). Setting: One intervention and control county in rural Qinghai Province, China. Intervention: Complementary food supplements (containing protein, fat, carbohydrate, vitamin A, B1, B2, B12, D3, folic acid, iron, zinc, and calcium) and complementary feeding counseling were given in the intervention county. Participants: Caregivers and their children aged 6-23 months. Primary and secondary outcomes measures: The effect of the interventions on anemia (hemoglobin< 110g/L) and stunting (z-score of height-for-age< -2.0) prevalence(controlled for differences between the counties), and infant feeding practices. Results: The surveys were conducted among 1804, 2187, and 2186 child aged 6-23 months in the intervention county in August 2012, 2013 and 2014 respectively, and 804, 680 and 790 children in the control county respectively. Between baseline and end-line, anemia prevalence decreased more in the intervention county compared to the control county (71.1% to 47.8% vs 86.3% to 75.3%, respectively; P<0.0001). There was no difference in the decrease in stunting prevalence between the counties (9.7% to 7.1% vs 17.0% to 15.0%; P=0.7954). The proportions of children given iron-rich or -fortified food, introduced (semi-) solid food at 6-8 months, and given food with minimum dietary diversity increased from 43.2% to 88.8% (P<0.0001), 81.4% to 96% (P=0.0470), and 53.0% to 59.8% (P<0.0001), respectively. Conclusions: We found much higher anemia prevalence in poor rural areas of Qinghai Province compared to national data. Community-based complementary food supplements combined with dietary counseling can improve feeding practices and reduce anemia prevalence. Future studies should use longer follow-up to assess the effects on stunting.
Data from: Ageing and reproduction: antioxidant supplementation alleviates telomere loss in wild birds
Reproduction is inherently costly. Environmental stressors, such as infection and limited food resources, can compromise investment at each breeding attempt. For example, recent data on captive birds showed that increased reproductive effort accelerates ageing. However, the effects of nutritional status and infection on ageing remain unknown. Telomeres function as protective caps at the ends of eukaryotic chromosomes, and changes in telomere length is a commonly used proxy for ageing. To partially address the mechanisms of ageing following reproduction, we supplemented, medicated or administered a combined treatment to wild blue tits (Cyanistes caeruleus) breeding in central Spain during 2012. The nutritional supplement consisted of two different antioxidants, while the medication was an antimalarial treatment against blood parasites. We evaluated the effect of these manipulations on reproductive success and parasite loads in the first breeding season, and on changes in telomere length between two consecutive breeding seasons. Supplemented birds showed no reduction in blood parasite infections in 2012, although they exhibited higher body mass and fledging success. The antimalarial drugs reduced infections by several parasite species, but this had no effect on fitness parameters. In the following season, telomeres from supplemented birds had shortened less. Altogether, we found that supplementation with antioxidants provided fitness benefits in the short term and reduced telomere loss a year following treatment. Our results provide indirect empirical support for accelerated telomere loss as a cost of reproduction.
Supplemental tables for: A periventricular gradient of innate immune cell activation in Multiple Sclerosis
<p><span><span><span><span><span><span><span><span><span><span><span><b>Objectives:</b> To explore <i>in-vivo</i> innate immune cell activation as a function of the distance from ventricular CSF in patients with Multiple Sclerosis (MS) using [18F]-DPA714 PET, and to investigate its relationship with periventricular microstructural damage, evaluated by magnetization transfer ratio (MTR), and with trajectories of disability worsening.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Methods: </b>Thirty-seven MS patients and nineteen healthy controls underwent MRI and [18F]-DPA714 TSPO dynamic PET, from which individual maps of voxels characterized by innate immune cell activation (DPA+) were generated. White matter (WM) was divided in 3mm-thick concentric rings radiating from the ventricular surface toward the cortex, and the percentage of DPA+ voxels and mean MTR were extracted from each ring. Two-year trajectories of disability worsening were collected to identify patients with and without recent disability worsening.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Results: </b>The percentage of DPA+ voxels was higher in patients compared to controls in the periventricular WM (<span><span>p=6.10e-6</span></span>), and declined with increasing distance from ventricular surface, with a steeper gradient in patients compared to controls (<span><span>p=0.001</span></span>). This gradient was found both in periventricular lesions and normal-appearing WM. In the total WM, it correlated with a gradient of microstructural tissue damage measured by MTR (<span><span>r<sub>s</sub>=-0.65, p=1.0e-3</span></span>). When compared to clinically stable patients, patients with disability worsening were characterized <span><span>by a higher percentage of DPA+ voxels </span></span>in the periventricular normal-appearing WM (<span><span>p=0.025</span></span>).</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Conclusions: </b>Our results demonstrate that in MS the innate immune cell activation predominates in periventricular regions and associates with microstructural damage and disability worsening. This could result from the diffusion of pro-inflammatory CSF-derived factors into surrounding tissues.</span></span></span></span></span></span></span></span></span></span></span></p>
Supplemental data from: Intraspecific facial bite marks in tyrannosaurids provide insight into sexual maturity and evolution of bird-like intersexual display
<p>Intraspecific aggression, or agonism, is a widespread intrasexual selective behavior important to understanding animal behavioral ecology and reproductive systems. Such behavior can be studied either by direct observation or inferred from wound/scar frequency in extant species, but is difficult to document in extinct taxa, limiting understanding of its evolution. Among extant archosaurs, crocodylians display extensive intrasexual aggression, whereas birds show extreme visual/vocal intersexual display. The evolutionary origin of this behavioral divergence, and pattern in non-avian dinosaurs, is unknown. Here we document the morphology, frequency, and ontogeny of intraspecific facial bite lesions (324 lesions) in a large sample of tyrannosaurids (202 specimens, 528 elements) to infer patterns of intraspecific aggression in non-avian theropods. Facial scars are consistent in position and orientation across tyrannosaurid species, suggesting bites were inflicted due to repeated/postured behavior. Facial scars are absent in young tyrannosaurids, first appear in immature animals (~50% adult skull length), are present in ~60% of the adult-sized specimens, and show aggressor:victim size isometry. The ontogenetic distribution of bite scars suggests agonistic behavior is associated with the onset of sexual maturity, and scar presence in approximately half the specimens may relate to a sexual pattern. Considered in a phylogenetic context, intraspecific bite marks are consistent and widely distributed in fossil and extant crocodyliforms and non-maniraptoriform theropods, suggesting a potential plesiomorphic behavior in archosaurs. Their absence in maniraptoriform theropods, including birds, may reflect a transition from boney cranial ornamentation and crocodylian-like intrasexual aggression to avian-like intersexual display with the evolution of pennaceous feathers.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.