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Supplemental_Tables_Jimenez2021
<p>Supplemental tables for the paper entitled "Reactive oxygen species homeostasis and circadian rhythms in plants" by Ana Jiménez, Francisca Sevilla and María C. Martí.</p>
On the impact of different templates on creating and understanding user stories - Supplemental Material
<p>Here we include the supplementary material that may be used as a replication package for the quasi-experiment reported in the paper "On the impact of different templates on creating and understanding user stories", submitted to RE 2021 (International Requirements Engineering Conference).</p>
FIGURE 2 in A new classification for Lipocarpha and Volkiella as infrageneric taxa of Cyperus s.l. (Cypereae, Cyperoideae, Cyperaceae): insights from species tree reconstruction supplemented with morphological and floral developmental data
FIGURE 2: A. Inflorescence of Lipocarpha chinensis (left) and Ascolepis brasiliensis (right) in Madagascar (picture taken by Marc Reynders); B. Inflorescences of Lipocarpha nana in Madagascar (picture taken by Marc Reynders); C. Inflorescence of Lipocarpha prieuriana (© Marco Schmidt, West African plants - A Photo Guide; photo used with permission of Brunken et al. 2008); D. Lipocarpha micrantha in its natural habitat in the United States (© Arthur Haines, New England Wild Flower Society; photo used with photographer's permission).
Supplemental videos for "Composition and decomposition of visuomotor maps during manual tracking", by Bernier et al.,
<p>The videos depict representative trials in Baseline, as well as for the first (1) and last (50) trials of each mapping.</p>
FIGURE 7 in A new classification for Lipocarpha and Volkiella as infrageneric taxa of Cyperus s.l. (Cypereae, Cyperoideae, Cyperaceae): insights from species tree reconstruction supplemented with morphological and floral developmental data
FIGURE 7: Shape of spikelet bracts of Lipocarpha species used in this study (modified from Goetghebeur & Van den Borre 1989). Bars: 1mm. A–D. Clade 1:—A. L. aristulata, B. L. drummondii, C. L. micrantha, D. L. micrantha; E–G. Clade 2:—E. L. albiceps, F. L. comosa, G. Volkiella disticha; H–N. Clade 3:—H. L. microcephala, I. L. filiformis, J. L. cf. filiformis, K. L. salzmannina, L. L. maculata, M. L. prieuriana, N. L. species; O–P. Clade 4:—O. L. leucaspis, P. L. nana; Q–T. Clade 5:—Q. L. hemisphaerica, R. L. chinensis, S. L. constricta, T. L. mexicana (Madagascar); U–V. Clade 6:—U. L. barteri, V. L. humboldtiana; W–X. Clade 7 (flowerbearing glumes instead of spikelet bracts!):—W. L. kernii, X. L. rehmannii. Abbreviations: ap: apical part of spikelet bract; bp: basal part of spikelet bract.
FIGURE 1 in A new classification for Lipocarpha and Volkiella as infrageneric taxa of Cyperus s.l. (Cypereae, Cyperoideae, Cyperaceae): insights from species tree reconstruction supplemented with morphological and floral developmental data
FIGURE 1: A. Phylogeny of Cyperus s.l., modified from Larridon et al. (2013). Distribution of the segregate genera now included in Cyperus s.l. An asterisk indicates a bootstrap support higher than 75%; B. The segregate genera of Cyperus s.l.
FIGURE 6 in A new classification for Lipocarpha and Volkiella as infrageneric taxa of Cyperus s.l. (Cypereae, Cyperoideae, Cyperaceae): insights from species tree reconstruction supplemented with morphological and floral developmental data
FIGURE 6: A. New interpretation of the inflorescence of Lipocarpha rehmannii inflorescence. The inflorescence consists of a spikelet of spirally arranged glumes each subtending a flower. B. Old interpretation of the Lipocarpha rehmannii inflorescence (Goetghebeur & Van den Borre 1989). In that interpretation, the inflorescence consists of a spike of highly reduced spikelets with each spikelet subtended by a spikelet bract (blue). Near the base of the nutlet, remnants of a prophyll and glume can be found. Blue = spikelet bract; pink = prophyll; yellow = glume; red = nutlet.
FIGURE 4 in A new classification for Lipocarpha and Volkiella as infrageneric taxa of Cyperus s.l. (Cypereae, Cyperoideae, Cyperaceae): insights from species tree reconstruction supplemented with morphological and floral developmental data
FIGURE 4: Estimated species tree with coalescent approaches using two chloroplast markers, trnH-psbA and rpl32-trnL and one nuclear marker, ETS1F. Lipocarpha is divided in seven clades, as indicated on the figure. All PP values are shown but we only consider PP values higher then 0.70 as significant. Fig. 4A–E. 3D reconstruction of spikelets (based on Larridon et al. 2013):—A. Spikelet of clades 3–6, B. Spikelet of clade 2, C. Spikelet of clade 1, D. Spikelet of Ascolepis clade, E. Spikelet of clade 7 (Rikliella clade). Blue = spikelet bract; pink = prophyll; yellow = glume; red = nutlet.
Telematic Wearable Music Video Supplement
<p>Video documentation of the wearable music course. Begins with ~2 minutes of solo wearable musical instruments developed by the instructor as demonstrations for students, followed by ~6 minutes of in-class collaborative telematic, wearable musical instrument experiments and explorations.</p>
Biotin supplemental figure 1
<p><strong>Impact of biotin supplemented diet on mouse pancreatic islet β-cell mass expansion and glucose induced electrical activity</strong></p> <p><strong>Supplemental Figure 1</strong></p>
Supplemental data for: Late Sandbian (Sa2) radiolarians of the Pingliang Formation from the Guanzhuang section, Gansu Province, China
<p>A diverse, well-preserved radiolarian assemblage is reported from the Sandbian age <i>Climacograptus bicornis</i> Graptolite Biozone. This new assemblage recovered from the Pingliang Formation in the Guanzhuang section, China includes six new species along with 13 other previously described taxa. <i>Geminusphaera</i> new genus incorporates <i>G. grandis</i> n. sp and <i>G. kongtongensis</i> n. sp. and is proposed for inaniguttids constructed from two distinct porous spheres bearing seven or more primary spines. <i>Protopylentonema</i> new genus is introduced to incorporate pylomate entactinarians with five-rayed initial spicules. It includes <i>P. ordosensis</i> n. sp. as well as <i>P. aperta, P</i>. <i>rimata</i> and <i>P</i>. <i>insueta</i> that were formerly assigned to <i>Kalimnasphaera</i>. Micro-computed tomography investigation of skeletal microstructure supports establishment of the new genera together with other new spumellarian species: <i>Haplotaeniatum implexa</i> n. sp., <i>Inanigutta quadrispinosa</i> n. sp. and <i>Kalimnasphaera pingliangensis</i> n. sp.. It also indicates that family level reassignment of <i>Etymalbaillella</i> from the Proventocitidae to the Ceratoikiscidae is appropriate.</p> <p>Global distribution of late Ordovician radiolarian occurrences highlights a strong preference for areas with equatorial to tropical sea surface temperatures. This must have led to ecological stress amongst radiolarian communities in adapting to global cooling in the Hirnantian.</p>
Supplemental materials of: Ignored biodiversity in acid soil islands in karst areas, South China: Impatiens longlinensis (Balsaminaceae), a new critically endangered species
<p><span>The karst area in South China is<i> </i>notable for its fragile vegetation and unique flora with many narrow endemics, and is one of the most threatened biodiversity hotspots in the world. However, the biodiversity of acid soil areas scattered in the karst area have previously been underestimated. With a recent increase of new discoveries of plants and animals, the conservation of biodiversity in these acid soil areas has become urgent. This study deals with a new species, <b><i>Impatiens</i> </b><b><i>longlinensis</i></b>. The new species is similar to <i>I. yui</i> S.H.Huang and <i>I. lasiophyton </i>Hook.f. in having pubescence, two lateral sepals, funnelform lower sepal, and linear capsule. But it can be distinguished by having orbicular to obovate dorsal sepals and oblong to elliptic lower and upper lobes of lateral united petals. Moreover, molecular data and micro-morphological evidence also support that the species is new to science. The new species is only known from a valley near the summit of Mt. Jinzhongshan within an area of less than 5 km<sup>2</sup>. Based on the Red List Categories and Criteria developed by the International Union for Conservation of Nature, and the threat posed by exploitation for tourism development, we categorize it as Critically Endangered (CR).</span></p>
The supplement of land abandonment study
<p>The following are available online at www.mdpi.com/xxx/s1, Figure S1: The differences of soil nutrients caused by human interferences. Columns in the same plot followed by the same letter are not different (p > 0.05) according to Kruskal-Wallis test, Figure S1: The correlation analysis of soil properties in each year, based on Spearman’s Rank correlation analysis. Only significant Spearman’s coefficients is shown (p < 0.05), Figure S3: Mantel test between soil properties and microbial community structure. *, ** and *** are used to show statistical significance at the 0.05, 0.01, and 0.001 level, respectively, Figure S4: The results of LDA on bacterial communities. The unclassified bacteria was removed, Figure S5: The results of LDA on fungal communities. The unclassified fungi was removed, Figure S6: The relative importance ranks of edaphic and human factors on microbial communities, based on %IncMSE of random forests model.</p>
Supplemental Material: Tectonic Deformation and Volatile Loss in the Formation of Noctis Labyrinthus, Mars
<p>Supplemental text and tables for pending publication</p>
Supplemental Material 2; Large Format Map: Tectonic Deformation and Volatile Loss in the Formation of Noctis Labyrinthus, Mars
<p>Large Format Map of Noctis Labyrinthus, Mars</p>
Figures 9–11 in Three new species of Yponomeutinae (Lepidoptera: Yponomeutidae) from China with faunistic supplements and an updated list of the Chinese species of the subfamily
Figures 9–11. (9) Adult of Zelleria japonicella Moriuti. Notes: Scale bar = 3 mm, (10) Male genitalia and aedeagus (a) of Zelleria japonicella Moriuti. Note: Scale bar = 0.5 mm, (11) Female genitalia of Zelleria japonicella Moriuti. Note: Scale bar = 1 mm.
Figures 5–8 in Three new species of Yponomeutinae (Lepidoptera: Yponomeutidae) from China with faunistic supplements and an updated list of the Chinese species of the subfamily
Figures 5–8. (5) Adult of Euhyponomeutoides spadix Sohn and Wu, n. sp. Note: Scale bar = 5 mm, (6) Adult ofYponomeuta zebra Sohn and Wu, n. sp. Note: Scale bar = 5 mm, (7) Female genitalia of Euhyponomeutoides spadix Sohn and Wu, n. sp. Note: Scale bar = 1 mm, (8) Female genitalia Yponomeuta zebra Sohn and Wu, n. sp. Note: Scale bar = 2 mm.
Figures 1–4 in Three new species of Yponomeutinae (Lepidoptera: Yponomeutidae) from China with faunistic supplements and an updated list of the Chinese species of the subfamily
Figures 1–4. (1) Adult of Cedestis leucopterostigmatis Sohn and Wu, n. sp. Note: Scale bar = 3 mm, (2) Adult of Cedestis exiguata. Note: Scale bar = 3 mm, (3) Female genitalia of Cedestis leucopterostigmatis Sohn and Wu, n. sp. Note: Scale bar = 1 mm, (4) Female genitalia of Cedestis exiguata Note: Scale bar = 1 mm.
A Gaussian process emulator for simulating ice sheet-climate interactions on a multi-million year timescale: CLISEMv1.0 (Video supplement)
<p>This video illustrates the ice sheet evolution during a 3 Myr period for three different emulators as described in the manuscript "A Gaussian process emulator for simulating ice sheet - climate interactions on a multi-million year timescale", submitted to Geoscientific Model Development. The ice sheet is forced by declining carbon dioxide concentrations from 980 to 720 ppmv and orbital parameter variations during the late Eocene (between 38 Ma and 35 Ma).</p>
GIANI Paper - Supplemental File 1
<p>Large simulated image of nuclei. There are approximately 2000 nuclei in total, each being approximately 10 microns long and 7.5 microns wide. The stack dimensions are 1500 x 1500 x 300 voxels, with each voxel being 0.4 x 0.4 x 2.0 microns, and a total data size of 2.5 GB.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.