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196
datasets available to search
ShareScore release 0.7.1
Dataset results
196 results for “16S rRNA”
CXCL12 produced from Foxl1_high mesenchymal cells modulates epithelial cell metabolism and suppresses intestinal neoplasia in Apc_Min/+ mice (16S rRNA-seq)
GEO Series GSE262915. mouse gut metagenome. 10 samples. Type: Other.
An Open-Source QIIME2 and R Pipeline for Multi-Amplicon 16S rRNA Profiling: Validation and Application in Pediatric Microbiome Studies
GEO Series GSE300047. unidentified. 119 samples. Type: Other.
Gut microbiota analysis in poorly controlled diabetes patients with latent TB infection (LTBI) and nonLTBI [16S rRNA]
GEO Series GSE199810. human feces metagenome. 130 samples. Type: Other.
Analysis of gut microbiota by pyrosequencing of 16S rRNA gene in F344 rats
GEO Series GSE67800. rat gut metagenome. 11 samples. Type: Other.
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [16s rRNA gene V4 region]
GEO Series GSE126900. human metagenome. 34 samples. Type: Other.
16S rRNA sequencing data of cecal digesta in goats infusion of three short-chain fatty acids
GEO Series GSE232036. Capra hircus. 24 samples. Type: Other.
Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [16s rRNA-seq]
GEO Series GSE311188. Mus musculus. 12 samples. Type: Other.
16S rRNA gene sequence data revealed effects of natural phenylethanoids on gut microbiota.
GEO Series GSE194127. Mus musculus. 30 samples. Type: Other.
Dysbacteriosis-induced LPS elevation disturbs the development of muscle progenitor cells by interfering with retinoic acid signaling [16S rRNA sequencing]
GEO Series GSE139422. mouse gut metagenome. 7 samples. Type: Other.
Microbiota configuration dictates nutritional immune optimization [16s rRNA-seq]
GEO Series GSE242696. feces metagenome. 17 samples. Type: Other.
Effect of trans-vaccenic acid(TVA) diet on 16S ribosomal RNA (rRNA) expression of mouse gut microbiome
GEO Series GSE202266. feces metagenome. 14 samples. Type: Other.
Association between gut microbiota and CpG island methylator phenotype in colorectal cancer [16S rRNA]
GEO Series GSE237523. Homo sapiens. 228 samples. Type: Other.
New 16S rRNA primers to uncover Bdellovibrio and like organisms diversity and abundance
<p>Alignment files and OTU tables</p>
16S rRNA gene and ITS2 region amplicon sequencing of GBP5 KO mice and WT littermates
<p>16S rRNA gene (v4) and ITS2 region amplicon sequencing of fecal microbiota of GBP5 KO mice and their littermate WT mice.</p>
16s rRNA sequencing
Open the record for dataset details and reuse information.
Kenya marine ecosystem 16S rRNA sequences
<p>Ion torrent sequences of eDNA samples collected from mangroves, seagrasses and coral reef</p>
16S rRNA sequences of gut microbiome and meta data
<p><b>Objective:</b>To understand the role of gut microbiome in influencing the pathogenesis of neuromyelitis optica spectrum disorders (NMOSD)among patients of south Indian origin.</p> <p><b>Methods:</b>In this case control study, stool and blood samples were collected from 39 NMOSD patients, including 17 with aquaporin 4 IgG antibodies (AQP4+) and 36 matched controls. 16S rRNA sequencing was used to investigate the gut microbiome. Peripheral CD4+ T cells were sorted in 12 healthy controls & 12 AQP4+NMOSD patients, RNA extracted, and immune gene expression analyzed using Nanostring nCounter human immunology kit code set.</p> <p><b>Results: </b>Microbiota community structure (beta-diversity) differed between AQP4+ NMOSD and healthy controls (p <0.001, pairwise PERMANOVA test). Linear discriminatory analysis effect size (LEfSe) identified several members of the microbiota that were altered in NMOSD patients, including an increase in <i>Clostridium bolteae </i>(effect size 4.23, pvalue 0.00007). <i>C.bolteae </i>was significantly more prevalent (p=0.02) amongAQP4-IgG + NMOSD (n= 8/17 subjects)compared to seronegative patients (n= 3/22) and was absent among healthy stool samples.<i>C bolteae </i>has a highly conserved glycerol uptake facilitator and related aquaporin protein(p59-71) that shares sequence homology with AQP4 peptide(p92-104), positioned within an immunodominant (AQP4specific)T cell epitope (p91-110).Presence of <i>C. bolteae</i> correlated with expression of inflammatory genes associated with both innate and adaptive immunity and particularly involved in plasma cell differentiation ,B cell chemotaxis and Th17 activation.</p> <p><b>Conclusion: </b>Our study described elevated levels of <i>C. bolteae </i>associated with AQP4+ NMOSD among Indian patients. It is possible that this organism may be causally related to the immunopathogenesis of this disease in susceptible individuals.</p> <p><b>Objective:</b>To understand the role of gut microbiome in influencing the pathogenesis of neuromyelitis optica spectrum disorders (NMOSD)among patients of south Indian origin.</p> <p><b>Methods:</b>In this case control study, stool and blood samples were collected from 39 NMOSD patients, including 17 with aquaporin 4 IgG antibodies (AQP4+) and 36 matched controls. 16S rRNA sequencing was used to investigate the gut microbiome. Peripheral CD4+ T cells were sorted in 12 healthy controls & 12 AQP4+NMOSD patients, RNA extracted, and immune gene expression analyzed using Nanostring nCounter human immunology kit code set.</p> <p><b>Results: </b>Microbiota community structure (beta-diversity) differed between AQP4+ NMOSD and healthy controls (p <0.001, pairwise PERMANOVA test). Linear discriminatory analysis effect size (LEfSe) identified several members of the microbiota that were altered in NMOSD patients, including an increase in <i>Clostridium bolteae </i>(effect size 4.23, pvalue 0.00007). <i>C.bolteae </i>was significantly more prevalent (p=0.02) amongAQP4-IgG + NMOSD (n= 8/17 subjects)compared to seronegative patients (n= 3/22) and was absent among healthy stool samples.<i>C bolteae </i>has a highly conserved glycerol uptake facilitator and related aquaporin protein(p59-71) that shares sequence homology with AQP4 peptide(p92-104), positioned within an immunodominant (AQP4specific)T cell epitope (p91-110).Presence of <i>C. bolteae</i> correlated with expression of inflammatory genes associated with both innate and adaptive immunity and particularly involved in plasma cell differentiation ,B cell chemotaxis and Th17 activation.</p> <p><b>Conclusion: </b>Our study described elevated levels of <i>C. bolteae </i>associated with AQP4+ NMOSD among Indian patients. It is possible that this organism may be causally related to the immunopathogenesis of this disease in susceptible individuals.</p>
QXZS in Menopausal Syndrome Based on 16S rRNA Sequencing Technology
ClinicalTrials.gov study NCT06143696. IPD Sharing: NO. Countries: 1. Publications: 0.
Chemotherapy-driven intestinal dysbiosis and microbial indole-3-propionic acid rewire bone marrow myelopoiesis to promote anti-metastatic immunity [16S rRNA-Seq]
GEO Series GSE296900. Mus musculus. 20 samples. Type: Other.
TRMT6 mitigates susceptibility and progression of DSS-induced colitis multifacetedly via translational regulation [16S rRNA-seq]
GEO Series GSE301603. Mus musculus. 6 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.