Find research datasets worth reusing
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250
datasets available to search
ShareScore release 0.9.0
Dataset results
250 results for “3D analysis”
Transcriptomic analysis in human 3D skin model injected with resorbable hyaluronic acid fillers reveals foreign body response.
GEO Series GSE216279. Homo sapiens. 36 samples. Type: Expression profiling by array.
3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)
GEO Series GSE146901. Homo sapiens. 52 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [RNA-Seq]
GEO Series GSE201354. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis in human 3D skin model injected with resorbable hyaluronic acid fillers reveals foreign body response [Perfectha]
GEO Series GSE216167. Homo sapiens. 14 samples. Type: Expression profiling by array.
Obtention of viable cell suspensions from breast cancer tumor biopsies for 3D chromatin conformation and single cell transcriptome analysis
GEO Series GSE270363. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Integrative analysis of 3D nucleome and chromatin accessibility reveals a chromatin barrier established for T-lineage commitment during early T cell development [Dnase-Seq, HiC-Seq, Mnase-Seq, RNA-Seq
GEO Series GSE79422. Mus musculus. 80 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Next Generation Sequencing (NGC) Analysis of Gene Expression Proliles in Human Gingiva-derived Mesenchymal Stem Cells (GMSCs) Cultured in Methacrylated 3D-Collagen Hydrogel Compared to 2D-cultured Cou
GEO Series GSE180519. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome Analysis of Non-Human Primate Induced Pluripotent Stem Cell-Derived Cardiomyocytes in 2D Monolayer Culture versus 3D Engineered Heart Tissue
GEO Series GSE156237. Macaca mulatta. 12 samples. Type: Expression profiling by high throughput sequencing.
ALDOC- and ENO2- driven glucose metabolism sustains 3D tumor spheroids growth regardless of nutrient environmental conditions: a multi-omics analysis
GEO Series GSE215235. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
A Microcavity-Based Sarcoma Spheroid Model for Drug Efficacy and Mechanism Analysis Using Cost-effective 3D Printing Technology
GEO Series GSE303862. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina [mm10_ATAC-seq]
GEO Series GSE276923. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate (4C-Seq)
GEO Series GSE122974. Mus musculus. 19 samples. Type: Other.
Integrative analysis of 3D nucleome and chromatin accessibility reveals a chromatin barrier established for T-lineage commitment during early T cell development [ChIP-Seq]
GEO Series GSE79874. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [Hi-C]
GEO Series GSE201353. Homo sapiens. 40 samples. Type: Other.
3D imaging and single-cells analysis reveal cellular heterogeneity of lymphatic valve endothelial cell types
GEO Series GSE295984. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Expression Analysis of 2D, 3D Quiescent, and 3D Activated Pancreatic Stellate Cells
GEO Series GSE93313. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Direct analysis of the embryo-maternal interactions in a 3D biomimetic implantation niche
GEO Series GSE151329. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis [RNA-seq]
GEO Series GSE217617. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing.
Obtention of viable cell suspensions from breast cancer tumor biopsies for 3D chromatin conformation and single cell transcriptome analysis [scRNA-seq1]
GEO Series GSE264644. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Deterioration of multi-level 3D genome organization during breast cancer progression [third-party re-analysis]
GEO Series GSE247171. Homo sapiens. 0 samples. Type: Third-party reanalysis; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.