Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries
GEO Series GSE114599. Mus musculus. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
CTCF and CohesinSA-1 Mark Active Promoters and Boundaries of Repressive Chromatin Domains in Primary Human Erythroid Cells
GEO Series GSE67893. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning [dataset 2]
GEO Series GSE112822. Mus musculus. 36 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells
GEO Series GSE185884. Mus musculus. 92 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion [HiChIP]
GEO Series GSE285007. Homo sapiens. 4 samples. Type: Other.
Variable extent of lineage-specificity and developmental stage-specificity of cohesin and CTCF binding within the immunoglobulin and T cell receptor loci
GEO Series GSE109909. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription
GEO Series GSE58534. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-seq analysis of CTCF binding sites in lymphocyte subsets [DP thymocytes]
GEO Series GSE41740. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF translates IL-2- and αKG-sensitive metabolic changes in T cells into context-dependent differentiation gene programs [RNA-Seq]
GEO Series GSE88829. Mus musculus. 57 samples. Type: Expression profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [RNA-seq]
GEO Series GSE234248. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ATAC-seq]
GEO Series GSE210816. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Manipulation of Long-Range Chromatin Interactions through CTCF Phase Separation for Cell Fate Control
GEO Series GSE147919. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [RNA-seq embryo]
GEO Series GSE272384. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Histone H3K27 acetylation at CTCF sites mediates cell type-specific chromatin interactions between them.
GEO Series GSE146827. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (ChIP-seq)
GEO Series GSE185880. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [LAM-HTGTS]
GEO Series GSE142777. Mus musculus. 110 samples. Type: Other.
Genetic disruption of Ctcf destabilizes DNA methylation
GEO Series GSE48975. Mus musculus. 15 samples. Type: Methylation profiling by high throughput sequencing.
Dynamic regulation of stress-responsive non-genomic CTCF complexes [RIP-seq]
GEO Series GSE139885. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
CTCF coordinates cell fate specification via orchestrating regulatory hubs with pioneer transcription factors
GEO Series GSE233946. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
DNA methylation insulates exons from CTCF loops with nuclear speckles
GEO Series GSE217760. Homo sapiens. 99 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.